Wall clock time and date at job start Sun Mar 29 2020 21:51:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53004 * 109.47209 * 2 1 4 4 H 1.09000 * 109.46944 * 54.48361 * 3 2 1 5 5 C 1.50701 * 109.47031 * 174.48162 * 3 2 1 6 6 H 1.08003 * 119.99745 * 120.00300 * 5 3 2 7 7 C 1.37868 * 120.00212 * 300.00035 * 5 3 2 8 8 N 1.31518 * 120.00162 * 0.02562 * 7 5 3 9 9 Si 1.86799 * 120.00241 * 180.02562 * 7 5 3 10 10 H 1.48502 * 109.47051 * 359.97438 * 9 7 5 11 11 H 1.48497 * 109.47368 * 120.00107 * 9 7 5 12 12 H 1.48504 * 109.47220 * 240.00082 * 9 7 5 13 13 N 1.46907 * 109.47013 * 294.48229 * 3 2 1 14 14 C 1.46895 * 110.99785 * 153.00839 * 13 3 2 15 15 H 1.09000 * 109.47365 * 33.45934 * 14 13 3 16 16 C 1.53007 * 109.47313 * 273.45984 * 14 13 3 17 17 C 1.52991 * 109.47225 * 180.02562 * 16 14 13 18 18 C 1.53004 * 109.47190 * 59.99941 * 17 16 14 19 19 C 1.53001 * 109.46994 * 299.99649 * 18 17 16 20 20 C 1.52995 * 109.47266 * 153.45892 * 14 13 3 21 21 H 1.09002 * 109.46927 * 300.00411 * 20 14 13 22 22 O 1.42900 * 109.46982 * 59.99825 * 20 14 13 23 23 H 1.09000 * 109.47372 * 60.62461 * 1 2 3 24 24 H 1.09004 * 109.47047 * 180.62610 * 1 2 3 25 25 H 1.08999 * 109.47167 * 300.62237 * 1 2 3 26 26 H 1.09003 * 109.46901 * 240.00367 * 2 1 3 27 27 H 1.09000 * 109.47615 * 120.00217 * 2 1 3 28 28 H 0.96999 * 120.00151 * 180.02562 * 8 7 5 29 29 H 1.00901 * 110.99566 * 29.05298 * 13 3 2 30 30 H 1.09002 * 109.46855 * 59.99697 * 16 14 13 31 31 H 1.09006 * 109.46515 * 299.99996 * 16 14 13 32 32 H 1.09000 * 109.47360 * 299.99894 * 17 16 14 33 33 H 1.08997 * 109.47405 * 179.97438 * 17 16 14 34 34 H 1.08996 * 109.47056 * 180.02562 * 18 17 16 35 35 H 1.09000 * 109.47008 * 59.99737 * 18 17 16 36 36 H 1.08996 * 109.47482 * 300.00392 * 19 18 17 37 37 H 1.08998 * 109.46952 * 179.97438 * 19 18 17 38 38 H 0.96703 * 113.99860 * 180.02562 * 22 20 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5982 1.9841 0.8365 5 6 3.5408 1.4447 0.1366 6 1 4.1527 1.8870 -0.6357 7 6 4.1327 0.8821 1.2475 8 7 3.3877 0.3431 2.1877 9 14 5.9930 0.8854 1.4172 10 1 6.5969 1.5468 0.2327 11 1 6.3766 1.6245 2.6467 12 1 6.4844 -0.5131 1.5067 13 7 1.6621 2.0955 -1.2605 14 6 1.5358 3.5483 -1.0835 15 1 2.2600 3.8885 -0.3434 16 6 0.1217 3.8828 -0.6046 17 6 -0.0100 5.3959 -0.4209 18 6 0.2557 6.0967 -1.7548 19 6 1.6699 5.7623 -2.2336 20 6 1.8018 4.2496 -2.4170 21 1 2.8092 4.0112 -2.7583 22 8 0.8523 3.8036 -3.3874 23 1 -0.3634 0.5041 -0.8955 24 1 -0.3633 -1.0276 0.0112 25 1 -0.3633 0.5235 0.8843 26 1 1.8933 -0.5138 -0.8900 27 1 1.8934 -0.5138 0.8899 28 1 3.8041 -0.0523 2.9694 29 1 0.8105 1.7009 -1.6310 30 1 -0.0678 3.3831 0.3455 31 1 -0.6026 3.5426 -1.3448 32 1 0.7142 5.7365 0.3191 33 1 -1.0176 5.6342 -0.0801 34 1 0.1624 7.1747 -1.6238 35 1 -0.4685 5.7561 -2.4947 36 1 2.3941 6.1028 -1.4937 37 1 1.8591 6.2611 -3.1841 38 1 0.9617 4.2075 -4.2592 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000052013609.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:51:53 Heat of formation + Delta-G solvation = -75.295032 kcal Electronic energy + Delta-G solvation = -16976.762734 eV Core-core repulsion = 14431.928490 eV Total energy + Delta-G solvation = -2544.834244 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -38.99398 -35.85588 -34.54593 -32.33685 -31.08967 -29.58915 -27.82196 -25.81154 -22.84716 -22.21034 -21.18127 -19.67900 -19.12535 -16.42710 -16.14567 -15.56102 -14.77564 -14.54867 -14.11715 -13.72229 -13.36159 -12.73688 -12.73437 -12.53923 -12.04752 -11.89862 -11.67219 -11.27928 -11.14097 -10.84302 -10.77494 -10.65583 -10.53290 -10.20814 -9.98956 -9.89359 -9.59847 -9.47061 -9.27059 -8.94218 -8.30287 -7.04924 -5.91903 -3.95893 3.33151 3.41149 3.46254 4.48051 4.71908 4.96082 5.03751 5.18240 5.35824 5.48341 5.57174 5.69909 5.81705 5.88069 5.91243 6.08912 6.17321 6.23416 6.24473 6.28091 6.41867 6.45718 6.49158 6.52825 6.74152 6.87414 6.93141 7.16998 7.26865 7.59453 7.85527 7.99137 8.06756 8.43242 8.49587 8.89706 9.13095 9.69156 11.13137 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.026696 B = 0.008553 C = 0.007520 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1048.575583 B = 3272.760637 C = 3722.571242 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.126 4.126 3 C 0.217 3.783 4 H 0.002 0.998 5 C -0.490 4.490 6 H 0.060 0.940 7 C 0.053 3.947 8 N -0.896 5.896 9 Si 0.893 3.107 10 H -0.274 1.274 11 H -0.287 1.287 12 H -0.286 1.286 13 N -0.677 5.677 14 C 0.106 3.894 15 H 0.088 0.912 16 C -0.143 4.143 17 C -0.115 4.115 18 C -0.111 4.111 19 C -0.153 4.153 20 C 0.117 3.883 21 H 0.057 0.943 22 O -0.557 6.557 23 H 0.036 0.964 24 H 0.036 0.964 25 H 0.041 0.959 26 H 0.039 0.961 27 H 0.098 0.902 28 H 0.258 0.742 29 H 0.324 0.676 30 H 0.058 0.942 31 H 0.063 0.937 32 H 0.058 0.942 33 H 0.053 0.947 34 H 0.052 0.948 35 H 0.064 0.936 36 H 0.069 0.931 37 H 0.058 0.942 38 H 0.363 0.637 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.628 8.611 -6.835 12.351 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.165 4.165 3 C 0.109 3.891 4 H 0.020 0.980 5 C -0.529 4.529 6 H 0.079 0.921 7 C -0.147 4.147 8 N -0.537 5.537 9 Si 0.721 3.279 10 H -0.198 1.198 11 H -0.213 1.213 12 H -0.212 1.212 13 N -0.307 5.307 14 C -0.005 4.005 15 H 0.106 0.894 16 C -0.182 4.182 17 C -0.153 4.153 18 C -0.149 4.149 19 C -0.191 4.191 20 C 0.058 3.942 21 H 0.075 0.925 22 O -0.361 6.361 23 H 0.055 0.945 24 H 0.055 0.945 25 H 0.060 0.940 26 H 0.058 0.942 27 H 0.116 0.884 28 H 0.068 0.932 29 H 0.142 0.858 30 H 0.077 0.923 31 H 0.082 0.918 32 H 0.077 0.923 33 H 0.072 0.928 34 H 0.071 0.929 35 H 0.083 0.917 36 H 0.088 0.912 37 H 0.076 0.924 38 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges -5.149 8.163 -6.371 11.564 hybrid contribution 0.396 0.387 0.288 0.624 sum -4.753 8.550 -6.083 11.520 Atomic orbital electron populations 1.21880 0.99632 0.99472 0.99712 1.21769 0.91237 1.00531 1.02922 1.19186 0.95207 0.89946 0.84720 0.98011 1.21286 0.91436 1.36089 1.04061 0.92143 1.24964 0.97963 0.95783 0.95941 1.69888 1.34485 1.39705 1.09599 0.86526 0.86034 0.77575 0.77763 1.19837 1.21310 1.21182 1.60677 1.37714 1.00928 1.31423 1.21431 0.95041 0.90603 0.93437 0.89422 1.22214 0.99450 0.95382 1.01185 1.21476 1.00745 0.96078 0.97021 1.21410 0.96944 0.98850 0.97667 1.22274 0.97922 0.97721 1.01208 1.21909 0.91741 0.90752 0.89840 0.92481 1.86557 1.57125 1.70001 1.22430 0.94474 0.94529 0.93980 0.94170 0.88361 0.93232 0.85780 0.92332 0.91788 0.92275 0.92780 0.92933 0.91707 0.91200 0.92365 0.79243 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.02 9.74 37.16 0.36 -2.65 16 2 C -0.13 -3.05 5.35 -26.73 -0.14 -3.19 16 3 C 0.22 5.45 1.82 -68.86 -0.13 5.33 16 4 H 0.00 0.06 7.23 -51.93 -0.38 -0.31 16 5 C -0.49 -13.62 8.61 -34.44 -0.30 -13.92 16 6 H 0.06 1.72 7.81 -52.48 -0.41 1.31 16 7 C 0.05 1.49 5.29 -17.82 -0.09 1.40 16 8 N -0.90 -25.71 11.29 55.43 0.63 -25.08 16 9 Si 0.89 21.65 29.54 -169.99 -5.02 16.62 16 10 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 11 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 12 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 13 N -0.68 -14.81 5.92 -100.95 -0.60 -15.41 16 14 C 0.11 2.02 2.05 -67.71 -0.14 1.88 16 15 H 0.09 1.87 7.69 -51.93 -0.40 1.47 16 16 C -0.14 -2.45 5.01 -26.73 -0.13 -2.58 16 17 C -0.11 -1.64 5.92 -26.73 -0.16 -1.79 16 18 C -0.11 -1.40 5.78 -26.73 -0.15 -1.56 16 19 C -0.15 -1.99 5.63 -26.76 -0.15 -2.14 16 20 C 0.12 1.87 3.43 -26.76 -0.09 1.78 16 21 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 22 O -0.56 -8.40 11.83 -35.23 -0.42 -8.81 16 23 H 0.04 0.69 6.48 -51.93 -0.34 0.36 16 24 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 25 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 26 H 0.04 0.97 8.14 -51.93 -0.42 0.55 16 27 H 0.10 2.65 5.94 -51.93 -0.31 2.34 16 28 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 29 H 0.32 6.84 6.22 -39.29 -0.24 6.60 16 30 H 0.06 1.09 7.57 -51.93 -0.39 0.70 16 31 H 0.06 1.10 7.67 -51.93 -0.40 0.70 16 32 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 33 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.06 0.83 7.68 -51.93 -0.40 0.43 16 36 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 37 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 38 H 0.36 3.85 9.08 45.56 0.41 4.27 16 LS Contribution 293.49 15.07 4.42 4.42 Total: -1.00 -29.05 293.49 -7.90 -36.95 By element: Atomic # 1 Polarization: 14.54 SS G_CDS: -5.79 Total: 8.75 kcal Atomic # 6 Polarization: -16.32 SS G_CDS: -1.12 Total: -17.44 kcal Atomic # 7 Polarization: -40.52 SS G_CDS: 0.03 Total: -40.49 kcal Atomic # 8 Polarization: -8.40 SS G_CDS: -0.42 Total: -8.81 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.62 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -29.05 -7.90 -36.95 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000052013609.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.343 kcal (2) G-P(sol) polarization free energy of solvation -29.050 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.393 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.902 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.952 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.295 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds