Wall clock time and date at job start Sun Mar 29 2020 21:51:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53004 * 109.47209 * 2 1 4 4 H 1.09000 * 109.46944 * 54.48361 * 3 2 1 5 5 C 1.50701 * 109.47031 * 174.48162 * 3 2 1 6 6 H 1.08003 * 119.99745 * 120.00300 * 5 3 2 7 7 C 1.37868 * 120.00212 * 300.00035 * 5 3 2 8 8 N 1.31518 * 120.00162 * 0.02562 * 7 5 3 9 9 Si 1.86799 * 120.00241 * 180.02562 * 7 5 3 10 10 H 1.48502 * 109.47051 * 359.97438 * 9 7 5 11 11 H 1.48497 * 109.47368 * 120.00107 * 9 7 5 12 12 H 1.48504 * 109.47220 * 240.00082 * 9 7 5 13 13 N 1.46907 * 109.47013 * 294.48229 * 3 2 1 14 14 C 1.46895 * 110.99785 * 153.00839 * 13 3 2 15 15 H 1.09000 * 109.47365 * 33.45934 * 14 13 3 16 16 C 1.53007 * 109.47313 * 273.45984 * 14 13 3 17 17 C 1.52991 * 109.47225 * 180.02562 * 16 14 13 18 18 C 1.53004 * 109.47190 * 59.99941 * 17 16 14 19 19 C 1.53001 * 109.46994 * 299.99649 * 18 17 16 20 20 C 1.52995 * 109.47266 * 153.45892 * 14 13 3 21 21 H 1.09002 * 109.46927 * 300.00411 * 20 14 13 22 22 O 1.42900 * 109.46982 * 59.99825 * 20 14 13 23 23 H 1.09000 * 109.47372 * 60.62461 * 1 2 3 24 24 H 1.09004 * 109.47047 * 180.62610 * 1 2 3 25 25 H 1.08999 * 109.47167 * 300.62237 * 1 2 3 26 26 H 1.09003 * 109.46901 * 240.00367 * 2 1 3 27 27 H 1.09000 * 109.47615 * 120.00217 * 2 1 3 28 28 H 0.96999 * 120.00151 * 180.02562 * 8 7 5 29 29 H 1.00901 * 110.99566 * 29.05298 * 13 3 2 30 30 H 1.09002 * 109.46855 * 59.99697 * 16 14 13 31 31 H 1.09006 * 109.46515 * 299.99996 * 16 14 13 32 32 H 1.09000 * 109.47360 * 299.99894 * 17 16 14 33 33 H 1.08997 * 109.47405 * 179.97438 * 17 16 14 34 34 H 1.08996 * 109.47056 * 180.02562 * 18 17 16 35 35 H 1.09000 * 109.47008 * 59.99737 * 18 17 16 36 36 H 1.08996 * 109.47482 * 300.00392 * 19 18 17 37 37 H 1.08998 * 109.46952 * 179.97438 * 19 18 17 38 38 H 0.96703 * 113.99860 * 180.02562 * 22 20 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5982 1.9841 0.8365 5 6 3.5408 1.4447 0.1366 6 1 4.1527 1.8870 -0.6357 7 6 4.1327 0.8821 1.2475 8 7 3.3877 0.3431 2.1877 9 14 5.9930 0.8854 1.4172 10 1 6.5969 1.5468 0.2327 11 1 6.3766 1.6245 2.6467 12 1 6.4844 -0.5131 1.5067 13 7 1.6621 2.0955 -1.2605 14 6 1.5358 3.5483 -1.0835 15 1 2.2600 3.8885 -0.3434 16 6 0.1217 3.8828 -0.6046 17 6 -0.0100 5.3959 -0.4209 18 6 0.2557 6.0967 -1.7548 19 6 1.6699 5.7623 -2.2336 20 6 1.8018 4.2496 -2.4170 21 1 2.8092 4.0112 -2.7583 22 8 0.8523 3.8036 -3.3874 23 1 -0.3634 0.5041 -0.8955 24 1 -0.3633 -1.0276 0.0112 25 1 -0.3633 0.5235 0.8843 26 1 1.8933 -0.5138 -0.8900 27 1 1.8934 -0.5138 0.8899 28 1 3.8041 -0.0523 2.9694 29 1 0.8105 1.7009 -1.6310 30 1 -0.0678 3.3831 0.3455 31 1 -0.6026 3.5426 -1.3448 32 1 0.7142 5.7365 0.3191 33 1 -1.0176 5.6342 -0.0801 34 1 0.1624 7.1747 -1.6238 35 1 -0.4685 5.7561 -2.4947 36 1 2.3941 6.1028 -1.4937 37 1 1.8591 6.2611 -3.1841 38 1 0.9617 4.2075 -4.2592 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000052013609.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:51:53 Heat of formation + Delta-G solvation = -95.743063 kcal Electronic energy + Delta-G solvation = -16977.649428 eV Core-core repulsion = 14431.928490 eV Total energy + Delta-G solvation = -2545.720937 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.33606 -37.60382 -35.79449 -34.27034 -32.82561 -30.81147 -29.47737 -27.68361 -24.70996 -23.48192 -22.51481 -21.50889 -20.56171 -18.29388 -17.63413 -16.96598 -16.67412 -15.89782 -15.61049 -15.43529 -14.76251 -14.54635 -14.18298 -13.80600 -13.56915 -13.44625 -13.27393 -12.97979 -12.71255 -12.55810 -12.46936 -12.09675 -11.97740 -11.90466 -11.59885 -11.50458 -11.42768 -11.04303 -10.88101 -10.47803 -10.43079 -8.86085 -8.05628 -6.18182 1.39111 1.41092 1.53078 2.43738 3.18364 3.53729 3.59168 3.87982 4.00937 4.18816 4.31588 4.38364 4.48383 4.55413 4.58188 4.63951 4.69065 4.72656 4.91592 4.94799 5.08741 5.12459 5.21223 5.22086 5.27101 5.29323 5.37782 5.46444 5.57078 5.62310 5.76825 5.91231 6.38712 6.58318 6.96712 7.05175 7.11637 7.51300 8.97245 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.026696 B = 0.008553 C = 0.007520 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1048.575583 B = 3272.760637 C = 3722.571242 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.122 4.122 3 C 0.226 3.774 4 H -0.031 1.031 5 C -0.509 4.509 6 H 0.047 0.953 7 C 0.008 3.992 8 N -0.920 5.920 9 Si 0.955 3.045 10 H -0.271 1.271 11 H -0.281 1.281 12 H -0.280 1.280 13 N -0.679 5.679 14 C 0.100 3.900 15 H 0.056 0.944 16 C -0.134 4.134 17 C -0.114 4.114 18 C -0.105 4.105 19 C -0.147 4.147 20 C 0.125 3.875 21 H 0.041 0.959 22 O -0.568 6.568 23 H 0.052 0.948 24 H 0.058 0.942 25 H 0.035 0.965 26 H 0.034 0.966 27 H 0.068 0.932 28 H 0.260 0.740 29 H 0.328 0.672 30 H 0.032 0.968 31 H 0.066 0.934 32 H 0.052 0.948 33 H 0.070 0.930 34 H 0.077 0.923 35 H 0.069 0.931 36 H 0.064 0.936 37 H 0.088 0.912 38 H 0.385 0.615 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.029 9.856 -8.110 14.116 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.161 4.161 3 C 0.118 3.882 4 H -0.014 1.014 5 C -0.548 4.548 6 H 0.066 0.934 7 C -0.190 4.190 8 N -0.561 5.561 9 Si 0.782 3.218 10 H -0.195 1.195 11 H -0.207 1.207 12 H -0.206 1.206 13 N -0.310 5.310 14 C -0.010 4.010 15 H 0.074 0.926 16 C -0.173 4.173 17 C -0.152 4.152 18 C -0.143 4.143 19 C -0.185 4.185 20 C 0.066 3.934 21 H 0.059 0.941 22 O -0.374 6.374 23 H 0.071 0.929 24 H 0.077 0.923 25 H 0.054 0.946 26 H 0.052 0.948 27 H 0.086 0.914 28 H 0.069 0.931 29 H 0.147 0.853 30 H 0.051 0.949 31 H 0.085 0.915 32 H 0.071 0.929 33 H 0.089 0.911 34 H 0.096 0.904 35 H 0.088 0.912 36 H 0.083 0.917 37 H 0.107 0.893 38 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges -5.559 9.427 -7.672 13.365 hybrid contribution 0.499 -0.003 0.662 0.829 sum -5.060 9.424 -7.011 12.789 Atomic orbital electron populations 1.21731 0.96441 1.01079 1.00193 1.21609 0.94117 0.99326 1.01032 1.18928 0.93843 0.90446 0.85029 1.01373 1.21515 0.92874 1.36354 1.04062 0.93431 1.25698 1.02329 0.95379 0.95594 1.70015 1.36142 1.40009 1.09907 0.85544 0.80780 0.77717 0.77805 1.19502 1.20665 1.20594 1.60629 1.38110 1.02658 1.29592 1.21470 0.95498 0.89002 0.95056 0.92615 1.22069 0.97877 0.97644 0.99680 1.21491 1.01621 0.93766 0.98368 1.21391 0.96463 1.00095 0.96303 1.22226 0.98317 0.95185 1.02754 1.21631 0.91021 0.92497 0.88281 0.94125 1.86490 1.56554 1.70701 1.23695 0.92875 0.92300 0.94566 0.94766 0.91351 0.93114 0.85321 0.94881 0.91528 0.92934 0.91113 0.90429 0.91219 0.91700 0.89325 0.76643 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.48 9.74 71.98 0.70 -4.78 16 2 C -0.12 -6.04 5.35 30.59 0.16 -5.88 16 3 C 0.23 11.78 1.82 44.17 0.08 11.86 16 4 H -0.03 -1.81 7.23 -2.39 -0.02 -1.83 16 5 C -0.51 -29.21 8.61 25.60 0.22 -28.99 16 6 H 0.05 2.78 7.81 -2.91 -0.02 2.76 16 7 C 0.01 0.45 5.29 84.65 0.45 0.89 16 8 N -0.92 -54.06 11.29 21.44 0.24 -53.81 16 9 Si 0.96 45.02 29.54 68.60 2.03 47.04 16 10 H -0.27 -12.50 7.11 99.48 0.71 -11.79 16 11 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 12 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 13 N -0.68 -30.32 5.92 -473.29 -2.80 -33.13 16 14 C 0.10 3.89 2.05 44.92 0.09 3.98 16 15 H 0.06 2.49 7.69 -2.39 -0.02 2.47 16 16 C -0.13 -4.55 5.01 30.59 0.15 -4.40 16 17 C -0.11 -3.08 5.92 30.59 0.18 -2.90 16 18 C -0.11 -2.31 5.78 30.60 0.18 -2.14 16 19 C -0.15 -3.44 5.63 30.58 0.17 -3.26 16 20 C 0.13 3.87 3.43 30.58 0.10 3.97 16 21 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 22 O -0.57 -15.86 11.83 -148.98 -1.76 -17.62 16 23 H 0.05 1.94 6.48 -2.39 -0.02 1.92 16 24 H 0.06 2.07 8.14 -2.39 -0.02 2.06 16 25 H 0.04 1.46 8.14 -2.39 -0.02 1.45 16 26 H 0.03 1.68 8.14 -2.39 -0.02 1.66 16 27 H 0.07 3.80 5.94 -2.39 -0.01 3.79 16 28 H 0.26 14.48 8.31 -92.71 -0.77 13.71 16 29 H 0.33 13.88 6.22 -89.69 -0.56 13.32 16 30 H 0.03 1.26 7.57 -2.39 -0.02 1.25 16 31 H 0.07 2.22 7.67 -2.38 -0.02 2.21 16 32 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 33 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 34 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 35 H 0.07 1.51 7.68 -2.39 -0.02 1.49 16 36 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 37 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 38 H 0.39 6.99 9.08 -74.06 -0.67 6.32 16 Total: -1.00 -63.77 293.49 0.00 -63.77 By element: Atomic # 1 Polarization: 25.58 SS G_CDS: -0.20 Total: 25.39 kcal Atomic # 6 Polarization: -34.14 SS G_CDS: 2.49 Total: -31.65 kcal Atomic # 7 Polarization: -84.38 SS G_CDS: -2.56 Total: -86.94 kcal Atomic # 8 Polarization: -15.86 SS G_CDS: -1.76 Total: -17.62 kcal Atomic # 14 Polarization: 45.02 SS G_CDS: 2.03 Total: 47.04 kcal Total: -63.77 0.00 -63.77 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000052013609.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.969 kcal (2) G-P(sol) polarization free energy of solvation -63.774 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.743 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.001 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.774 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.743 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds