Wall clock time and date at job start Sun Mar 29 2020 21:51:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53001 * 109.47063 * 2 1 4 4 H 1.09003 * 109.46530 * 305.03047 * 3 2 1 5 5 C 1.50695 * 109.47148 * 185.02946 * 3 2 1 6 6 H 1.08001 * 120.00392 * 239.99456 * 5 3 2 7 7 C 1.37882 * 119.99814 * 59.99674 * 5 3 2 8 8 N 1.31515 * 120.00032 * 0.02562 * 7 5 3 9 9 Si 1.86800 * 119.99945 * 179.97438 * 7 5 3 10 10 H 1.48499 * 109.47088 * 89.99992 * 9 7 5 11 11 H 1.48499 * 109.47235 * 210.00132 * 9 7 5 12 12 H 1.48506 * 109.47143 * 330.00106 * 9 7 5 13 13 N 1.46892 * 109.47339 * 65.02661 * 3 2 1 14 14 C 1.46900 * 111.00262 * 204.02205 * 13 3 2 15 15 H 1.08998 * 109.47289 * 325.28566 * 14 13 3 16 16 C 1.53006 * 109.47103 * 85.28106 * 14 13 3 17 17 C 1.53003 * 109.47057 * 180.02562 * 16 14 13 18 18 C 1.53000 * 109.47008 * 300.00140 * 17 16 14 19 19 C 1.52998 * 109.47034 * 60.00335 * 18 17 16 20 20 C 1.52995 * 109.47271 * 299.99394 * 19 18 17 21 21 H 1.09000 * 109.47401 * 300.00775 * 20 19 18 22 22 O 1.42899 * 109.47552 * 180.02562 * 20 19 18 23 23 H 1.08998 * 109.46730 * 184.46027 * 1 2 3 24 24 H 1.09001 * 109.47383 * 304.46245 * 1 2 3 25 25 H 1.09001 * 109.47025 * 64.46625 * 1 2 3 26 26 H 1.08994 * 109.47274 * 239.99278 * 2 1 3 27 27 H 1.09008 * 109.46693 * 119.99196 * 2 1 3 28 28 H 0.97004 * 119.99720 * 180.02562 * 8 7 5 29 29 H 1.00909 * 111.00235 * 80.07080 * 13 3 2 30 30 H 1.08997 * 109.47062 * 300.00638 * 16 14 13 31 31 H 1.08998 * 109.46673 * 60.00083 * 16 14 13 32 32 H 1.09000 * 109.46866 * 60.00530 * 17 16 14 33 33 H 1.09000 * 109.46425 * 180.02562 * 17 16 14 34 34 H 1.08999 * 109.46693 * 180.02562 * 18 17 16 35 35 H 1.09002 * 109.47219 * 299.99599 * 18 17 16 36 36 H 1.08998 * 109.47071 * 59.99872 * 19 18 17 37 37 H 1.09001 * 109.46681 * 179.97438 * 19 18 17 38 38 H 0.96703 * 113.99901 * 59.99666 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6049 1.9816 -0.8416 5 6 3.5418 1.4444 -0.1246 6 1 4.1475 1.8889 0.6513 7 6 4.1426 0.8786 -1.2291 8 7 3.4051 0.3377 -2.1741 9 14 6.0042 0.8815 -1.3839 10 1 6.5545 -0.3500 -0.7627 11 1 6.3815 0.9228 -2.8195 12 1 6.5566 2.0740 -0.6924 13 7 1.6520 2.0991 1.2554 14 6 1.5956 3.5578 1.0911 15 1 2.3716 3.8753 0.3946 16 6 0.2240 3.9567 0.5428 17 6 0.1655 5.4759 0.3711 18 6 0.3894 6.1512 1.7257 19 6 1.7610 5.7524 2.2739 20 6 1.8195 4.2332 2.4456 21 1 1.0435 3.9161 3.1423 22 8 3.1003 3.8607 2.9582 23 1 -0.3633 -1.0246 0.0799 24 1 -0.3634 0.5815 0.8473 25 1 -0.3633 0.4430 -0.9273 26 1 1.8934 -0.5139 -0.8899 27 1 1.8933 -0.5138 0.8901 28 1 3.8278 -0.0606 -2.9510 29 1 2.2769 1.8436 2.0054 30 1 0.0647 3.4758 -0.4223 31 1 -0.5520 3.6392 1.2393 32 1 0.9415 5.7929 -0.3256 33 1 -0.8118 5.7600 -0.0191 34 1 0.3473 7.2335 1.6034 35 1 -0.3867 5.8342 2.4224 36 1 2.5369 6.0694 1.5771 37 1 1.9206 6.2338 3.2386 38 1 3.3097 4.2532 3.8168 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000052013615.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:51:59 Heat of formation + Delta-G solvation = -79.778026 kcal Electronic energy + Delta-G solvation = -16953.565316 eV Core-core repulsion = 14408.536674 eV Total energy + Delta-G solvation = -2545.028641 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -38.88851 -35.63118 -35.09214 -32.25562 -31.01917 -29.49461 -27.89480 -25.55922 -22.85771 -22.16901 -21.10874 -19.42365 -19.19018 -16.89945 -16.47552 -15.35379 -14.76535 -14.28205 -13.95206 -13.62670 -13.32137 -13.11462 -12.76220 -12.36788 -12.17540 -11.79370 -11.31173 -11.16126 -11.08671 -10.96924 -10.79276 -10.63980 -10.45658 -10.33480 -10.06128 -9.74976 -9.55398 -9.49016 -9.25931 -8.90247 -8.27329 -7.13508 -5.89513 -4.00795 3.33330 3.39798 3.44657 4.48286 4.53476 4.89779 4.97086 5.22001 5.34288 5.42723 5.50316 5.61851 5.81071 5.82524 5.85795 6.00509 6.18808 6.35206 6.37641 6.44311 6.46689 6.56957 6.59647 6.73731 6.78883 6.94422 7.21980 7.24356 7.55303 7.69995 7.89082 8.00045 8.20210 8.30931 8.45983 8.82970 9.13831 9.66100 11.10434 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.024359 B = 0.009130 C = 0.007795 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1149.209073 B = 3066.146567 C = 3591.274664 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.107 4.107 3 C 0.215 3.785 4 H 0.031 0.969 5 C -0.537 4.537 6 H 0.057 0.943 7 C 0.064 3.936 8 N -0.889 5.889 9 Si 0.887 3.113 10 H -0.281 1.281 11 H -0.288 1.288 12 H -0.276 1.276 13 N -0.684 5.684 14 C 0.103 3.897 15 H 0.052 0.948 16 C -0.104 4.104 17 C -0.122 4.122 18 C -0.114 4.114 19 C -0.149 4.149 20 C 0.104 3.896 21 H 0.053 0.947 22 O -0.559 6.559 23 H 0.023 0.977 24 H 0.049 0.951 25 H 0.035 0.965 26 H 0.089 0.911 27 H 0.029 0.971 28 H 0.259 0.741 29 H 0.336 0.664 30 H 0.068 0.932 31 H 0.061 0.939 32 H 0.061 0.939 33 H 0.059 0.941 34 H 0.058 0.942 35 H 0.060 0.940 36 H 0.069 0.931 37 H 0.057 0.943 38 H 0.367 0.633 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.523 8.915 7.483 12.883 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.145 4.145 3 C 0.107 3.893 4 H 0.049 0.951 5 C -0.576 4.576 6 H 0.075 0.925 7 C -0.137 4.137 8 N -0.528 5.528 9 Si 0.715 3.285 10 H -0.208 1.208 11 H -0.214 1.214 12 H -0.201 1.201 13 N -0.315 5.315 14 C -0.008 4.008 15 H 0.070 0.930 16 C -0.142 4.142 17 C -0.160 4.160 18 C -0.151 4.151 19 C -0.188 4.188 20 C 0.045 3.955 21 H 0.071 0.929 22 O -0.363 6.363 23 H 0.042 0.958 24 H 0.068 0.932 25 H 0.054 0.946 26 H 0.108 0.892 27 H 0.047 0.953 28 H 0.069 0.931 29 H 0.154 0.846 30 H 0.087 0.913 31 H 0.080 0.920 32 H 0.080 0.920 33 H 0.078 0.922 34 H 0.077 0.923 35 H 0.079 0.921 36 H 0.087 0.913 37 H 0.076 0.924 38 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges -6.164 8.384 6.623 12.335 hybrid contribution 2.045 0.541 0.278 2.133 sum -4.119 8.925 6.901 12.010 Atomic orbital electron populations 1.21713 0.99117 0.98361 1.00294 1.21497 0.92016 0.99439 1.01566 1.19142 0.92733 0.91044 0.86344 0.95134 1.21964 0.92946 1.37366 1.05373 0.92512 1.24939 0.97748 0.95246 0.95789 1.69886 1.34623 1.38780 1.09499 0.86676 0.86440 0.78377 0.76984 1.20752 1.21367 1.20069 1.60949 1.56258 1.04349 1.09915 1.21253 0.96087 0.90379 0.93085 0.92999 1.21514 0.97263 0.93728 1.01681 1.21590 1.01297 0.96369 0.96772 1.21457 0.96647 0.99581 0.97432 1.22256 0.98364 0.97089 1.01066 1.22031 0.84666 0.92383 0.96458 0.92858 1.86647 1.36309 1.73967 1.39363 0.95778 0.93154 0.94626 0.89231 0.95251 0.93087 0.84618 0.91347 0.92028 0.92024 0.92219 0.92342 0.92108 0.91271 0.92392 0.78724 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.90 9.85 37.16 0.37 -2.54 16 2 C -0.11 -2.63 5.45 -26.73 -0.15 -2.78 16 3 C 0.22 5.48 1.79 -68.87 -0.12 5.35 16 4 H 0.03 0.86 7.14 -51.93 -0.37 0.49 16 5 C -0.54 -15.08 8.22 -34.44 -0.28 -15.36 16 6 H 0.06 1.64 7.76 -52.49 -0.41 1.23 16 7 C 0.06 1.82 5.29 -17.82 -0.09 1.73 16 8 N -0.89 -25.75 11.29 55.43 0.63 -25.12 16 9 Si 0.89 21.96 29.54 -169.99 -5.02 16.93 16 10 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 11 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 12 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 13 N -0.68 -14.91 5.43 -100.96 -0.55 -15.46 16 14 C 0.10 1.98 2.02 -67.71 -0.14 1.84 16 15 H 0.05 1.18 7.60 -51.93 -0.39 0.79 16 16 C -0.10 -1.73 5.41 -26.73 -0.14 -1.88 16 17 C -0.12 -1.67 5.92 -26.73 -0.16 -1.83 16 18 C -0.11 -1.35 5.92 -26.73 -0.16 -1.51 16 19 C -0.15 -1.95 5.54 -26.73 -0.15 -2.09 16 20 C 0.10 1.63 3.02 -26.73 -0.08 1.55 16 21 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 22 O -0.56 -9.26 12.46 -35.23 -0.44 -9.70 16 23 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 24 H 0.05 1.02 7.63 -51.93 -0.40 0.62 16 25 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 26 H 0.09 2.46 5.95 -51.93 -0.31 2.15 16 27 H 0.03 0.72 8.14 -51.92 -0.42 0.29 16 28 H 0.26 7.18 8.31 -40.82 -0.34 6.85 16 29 H 0.34 7.62 7.36 -39.29 -0.29 7.33 16 30 H 0.07 1.27 7.43 -51.93 -0.39 0.89 16 31 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 32 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 33 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 35 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 37 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 38 H 0.37 4.15 9.08 45.56 0.41 4.56 16 LS Contribution 296.31 15.07 4.47 4.47 Total: -1.00 -29.57 296.31 -7.95 -37.52 By element: Atomic # 1 Polarization: 14.80 SS G_CDS: -5.92 Total: 8.87 kcal Atomic # 6 Polarization: -16.41 SS G_CDS: -1.11 Total: -17.52 kcal Atomic # 7 Polarization: -40.65 SS G_CDS: 0.08 Total: -40.58 kcal Atomic # 8 Polarization: -9.26 SS G_CDS: -0.44 Total: -9.70 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.02 Total: 16.93 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -29.57 -7.95 -37.52 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000052013615.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.259 kcal (2) G-P(sol) polarization free energy of solvation -29.571 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.830 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.948 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.520 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.778 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds