Wall clock time and date at job start Sun Mar 29 2020 21:51:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53001 * 109.47063 * 2 1 4 4 H 1.09003 * 109.46530 * 305.03047 * 3 2 1 5 5 C 1.50695 * 109.47148 * 185.02946 * 3 2 1 6 6 H 1.08001 * 120.00392 * 239.99456 * 5 3 2 7 7 C 1.37882 * 119.99814 * 59.99674 * 5 3 2 8 8 N 1.31515 * 120.00032 * 0.02562 * 7 5 3 9 9 Si 1.86800 * 119.99945 * 179.97438 * 7 5 3 10 10 H 1.48499 * 109.47088 * 89.99992 * 9 7 5 11 11 H 1.48499 * 109.47235 * 210.00132 * 9 7 5 12 12 H 1.48506 * 109.47143 * 330.00106 * 9 7 5 13 13 N 1.46892 * 109.47339 * 65.02661 * 3 2 1 14 14 C 1.46900 * 111.00262 * 204.02205 * 13 3 2 15 15 H 1.08998 * 109.47289 * 325.28566 * 14 13 3 16 16 C 1.53006 * 109.47103 * 85.28106 * 14 13 3 17 17 C 1.53003 * 109.47057 * 180.02562 * 16 14 13 18 18 C 1.53000 * 109.47008 * 300.00140 * 17 16 14 19 19 C 1.52998 * 109.47034 * 60.00335 * 18 17 16 20 20 C 1.52995 * 109.47271 * 299.99394 * 19 18 17 21 21 H 1.09000 * 109.47401 * 300.00775 * 20 19 18 22 22 O 1.42899 * 109.47552 * 180.02562 * 20 19 18 23 23 H 1.08998 * 109.46730 * 184.46027 * 1 2 3 24 24 H 1.09001 * 109.47383 * 304.46245 * 1 2 3 25 25 H 1.09001 * 109.47025 * 64.46625 * 1 2 3 26 26 H 1.08994 * 109.47274 * 239.99278 * 2 1 3 27 27 H 1.09008 * 109.46693 * 119.99196 * 2 1 3 28 28 H 0.97004 * 119.99720 * 180.02562 * 8 7 5 29 29 H 1.00909 * 111.00235 * 80.07080 * 13 3 2 30 30 H 1.08997 * 109.47062 * 300.00638 * 16 14 13 31 31 H 1.08998 * 109.46673 * 60.00083 * 16 14 13 32 32 H 1.09000 * 109.46866 * 60.00530 * 17 16 14 33 33 H 1.09000 * 109.46425 * 180.02562 * 17 16 14 34 34 H 1.08999 * 109.46693 * 180.02562 * 18 17 16 35 35 H 1.09002 * 109.47219 * 299.99599 * 18 17 16 36 36 H 1.08998 * 109.47071 * 59.99872 * 19 18 17 37 37 H 1.09001 * 109.46681 * 179.97438 * 19 18 17 38 38 H 0.96703 * 113.99901 * 59.99666 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6049 1.9816 -0.8416 5 6 3.5418 1.4444 -0.1246 6 1 4.1475 1.8889 0.6513 7 6 4.1426 0.8786 -1.2291 8 7 3.4051 0.3377 -2.1741 9 14 6.0042 0.8815 -1.3839 10 1 6.5545 -0.3500 -0.7627 11 1 6.3815 0.9228 -2.8195 12 1 6.5566 2.0740 -0.6924 13 7 1.6520 2.0991 1.2554 14 6 1.5956 3.5578 1.0911 15 1 2.3716 3.8753 0.3946 16 6 0.2240 3.9567 0.5428 17 6 0.1655 5.4759 0.3711 18 6 0.3894 6.1512 1.7257 19 6 1.7610 5.7524 2.2739 20 6 1.8195 4.2332 2.4456 21 1 1.0435 3.9161 3.1423 22 8 3.1003 3.8607 2.9582 23 1 -0.3633 -1.0246 0.0799 24 1 -0.3634 0.5815 0.8473 25 1 -0.3633 0.4430 -0.9273 26 1 1.8934 -0.5139 -0.8899 27 1 1.8933 -0.5138 0.8901 28 1 3.8278 -0.0606 -2.9510 29 1 2.2769 1.8436 2.0054 30 1 0.0647 3.4758 -0.4223 31 1 -0.5520 3.6392 1.2393 32 1 0.9415 5.7929 -0.3256 33 1 -0.8118 5.7600 -0.0191 34 1 0.3473 7.2335 1.6034 35 1 -0.3867 5.8342 2.4224 36 1 2.5369 6.0694 1.5771 37 1 1.9206 6.2338 3.2386 38 1 3.3097 4.2532 3.8168 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000052013615.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:51:58 Heat of formation + Delta-G solvation = -100.828189 kcal Electronic energy + Delta-G solvation = -16954.478119 eV Core-core repulsion = 14408.536674 eV Total energy + Delta-G solvation = -2545.941445 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.22681 -37.41651 -36.37888 -34.20277 -32.83041 -30.72558 -29.51290 -27.46020 -24.71086 -23.48976 -22.41951 -21.24611 -20.62715 -18.62176 -18.14948 -16.88686 -16.68791 -15.71969 -15.36635 -15.16847 -14.66671 -14.61034 -14.52108 -13.78474 -13.66915 -13.38123 -13.14607 -13.01198 -12.85341 -12.54996 -12.32823 -12.21253 -12.05957 -11.71462 -11.55627 -11.49638 -11.33150 -11.08758 -10.81139 -10.65067 -10.44727 -9.03239 -8.05063 -6.26398 1.34679 1.35331 1.45795 2.39190 3.13087 3.36946 3.56122 3.84094 4.11372 4.15148 4.33840 4.41518 4.56095 4.56780 4.62171 4.65569 4.78075 4.89127 4.97921 5.03143 5.15822 5.20186 5.24424 5.26917 5.31732 5.38605 5.43197 5.52023 5.57379 5.66940 5.79113 6.13702 6.24452 6.43085 6.85351 7.00720 7.06498 7.44149 8.90872 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.024359 B = 0.009130 C = 0.007795 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1149.209073 B = 3066.146567 C = 3591.274664 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.103 4.103 3 C 0.225 3.775 4 H -0.003 1.003 5 C -0.554 4.554 6 H 0.042 0.958 7 C 0.018 3.982 8 N -0.911 5.911 9 Si 0.949 3.051 10 H -0.273 1.273 11 H -0.280 1.280 12 H -0.277 1.277 13 N -0.673 5.673 14 C 0.098 3.902 15 H 0.005 0.995 16 C -0.098 4.098 17 C -0.119 4.119 18 C -0.108 4.108 19 C -0.143 4.143 20 C 0.108 3.892 21 H 0.069 0.931 22 O -0.587 6.587 23 H 0.046 0.954 24 H 0.059 0.941 25 H 0.030 0.970 26 H 0.060 0.940 27 H 0.025 0.975 28 H 0.261 0.739 29 H 0.331 0.669 30 H 0.038 0.962 31 H 0.075 0.925 32 H 0.045 0.955 33 H 0.081 0.919 34 H 0.082 0.918 35 H 0.077 0.923 36 H 0.049 0.951 37 H 0.090 0.910 38 H 0.390 0.610 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.159 10.064 8.977 14.826 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.142 4.142 3 C 0.116 3.884 4 H 0.015 0.985 5 C -0.593 4.593 6 H 0.060 0.940 7 C -0.182 4.182 8 N -0.551 5.551 9 Si 0.775 3.225 10 H -0.199 1.199 11 H -0.206 1.206 12 H -0.202 1.202 13 N -0.302 5.302 14 C -0.013 4.013 15 H 0.023 0.977 16 C -0.136 4.136 17 C -0.157 4.157 18 C -0.146 4.146 19 C -0.182 4.182 20 C 0.050 3.950 21 H 0.087 0.913 22 O -0.394 6.394 23 H 0.065 0.935 24 H 0.078 0.922 25 H 0.049 0.951 26 H 0.078 0.922 27 H 0.044 0.956 28 H 0.071 0.929 29 H 0.148 0.852 30 H 0.057 0.943 31 H 0.093 0.907 32 H 0.064 0.936 33 H 0.100 0.900 34 H 0.101 0.899 35 H 0.096 0.904 36 H 0.068 0.932 37 H 0.108 0.892 38 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges -6.807 9.547 8.137 14.272 hybrid contribution 2.253 0.187 -0.185 2.268 sum -4.554 9.735 7.952 13.369 Atomic orbital electron populations 1.21558 0.96160 0.99975 1.00442 1.21361 0.94648 0.98359 0.99829 1.18885 0.91228 0.91456 0.86839 0.98463 1.22180 0.94391 1.37466 1.05290 0.93969 1.25658 1.02050 0.94945 0.95508 1.70006 1.36208 1.39065 1.09790 0.85710 0.81289 0.78358 0.77182 1.19902 1.20570 1.20230 1.60930 1.55224 1.06107 1.07942 1.21393 0.96185 0.88881 0.94806 0.97719 1.21445 0.95888 0.96092 1.00169 1.21582 1.02050 0.93906 0.98204 1.21461 0.96193 1.00812 0.96092 1.22212 0.98689 0.94848 1.02421 1.21960 0.84837 0.93961 0.94277 0.91291 1.86587 1.36755 1.74864 1.41238 0.93505 0.92152 0.95122 0.92160 0.95635 0.92925 0.85247 0.94322 0.90672 0.93579 0.90023 0.89918 0.90398 0.93169 0.89152 0.76028 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.18 9.85 71.98 0.71 -4.47 16 2 C -0.10 -5.21 5.45 30.60 0.17 -5.05 16 3 C 0.22 11.88 1.79 44.17 0.08 11.96 16 4 H 0.00 -0.15 7.14 -2.39 -0.02 -0.17 16 5 C -0.55 -32.20 8.22 25.60 0.21 -31.99 16 6 H 0.04 2.52 7.76 -2.91 -0.02 2.50 16 7 C 0.02 1.03 5.29 84.66 0.45 1.48 16 8 N -0.91 -54.13 11.29 21.45 0.24 -53.89 16 9 Si 0.95 45.83 29.54 68.60 2.03 47.86 16 10 H -0.27 -12.81 7.11 99.48 0.71 -12.11 16 11 H -0.28 -13.13 7.11 99.48 0.71 -12.42 16 12 H -0.28 -13.36 7.11 99.48 0.71 -12.65 16 13 N -0.67 -29.93 5.43 -473.32 -2.57 -32.50 16 14 C 0.10 3.84 2.02 44.92 0.09 3.93 16 15 H 0.00 0.23 7.60 -2.39 -0.02 0.21 16 16 C -0.10 -3.26 5.41 30.60 0.17 -3.10 16 17 C -0.12 -3.09 5.92 30.60 0.18 -2.91 16 18 C -0.11 -2.21 5.92 30.59 0.18 -2.03 16 19 C -0.14 -3.38 5.54 30.59 0.17 -3.21 16 20 C 0.11 3.27 3.02 30.59 0.09 3.36 16 21 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 22 O -0.59 -18.95 12.46 -148.98 -1.86 -20.81 16 23 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 24 H 0.06 2.38 7.63 -2.39 -0.02 2.36 16 25 H 0.03 1.28 8.14 -2.39 -0.02 1.26 16 26 H 0.06 3.40 5.95 -2.39 -0.01 3.39 16 27 H 0.02 1.26 8.14 -2.38 -0.02 1.24 16 28 H 0.26 14.74 8.31 -92.71 -0.77 13.97 16 29 H 0.33 15.23 7.36 -89.69 -0.66 14.57 16 30 H 0.04 1.49 7.43 -2.39 -0.02 1.47 16 31 H 0.07 2.29 8.14 -2.39 -0.02 2.27 16 32 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16 33 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 34 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 35 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 36 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 37 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 38 H 0.39 8.08 9.08 -74.06 -0.67 7.41 16 Total: -1.00 -65.83 296.31 0.03 -65.80 By element: Atomic # 1 Polarization: 25.86 SS G_CDS: -0.30 Total: 25.56 kcal Atomic # 6 Polarization: -34.51 SS G_CDS: 2.49 Total: -32.01 kcal Atomic # 7 Polarization: -84.06 SS G_CDS: -2.33 Total: -86.39 kcal Atomic # 8 Polarization: -18.95 SS G_CDS: -1.86 Total: -20.81 kcal Atomic # 14 Polarization: 45.83 SS G_CDS: 2.03 Total: 47.86 kcal Total: -65.83 0.03 -65.80 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000052013615.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.029 kcal (2) G-P(sol) polarization free energy of solvation -65.831 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.860 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.031 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.799 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.828 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds