Wall clock time and date at job start Sun Mar 29 2020 21:50:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.52999 * 109.47376 * 2 1 4 4 H 1.09005 * 109.46819 * 54.85681 * 3 2 1 5 5 C 1.50703 * 109.47354 * 174.85983 * 3 2 1 6 6 H 1.08007 * 119.99840 * 120.00027 * 5 3 2 7 7 C 1.37869 * 120.00061 * 300.00329 * 5 3 2 8 8 N 1.31520 * 120.00222 * 359.97438 * 7 5 3 9 9 Si 1.86802 * 119.99958 * 180.02562 * 7 5 3 10 10 H 1.48493 * 109.47112 * 359.97438 * 9 7 5 11 11 H 1.48506 * 109.47073 * 119.99829 * 9 7 5 12 12 H 1.48500 * 109.47030 * 239.99786 * 9 7 5 13 13 N 1.46899 * 109.47383 * 294.86351 * 3 2 1 14 14 C 1.46896 * 111.00459 * 154.12914 * 13 3 2 15 15 C 1.52997 * 109.47212 * 185.41239 * 14 13 3 16 16 C 1.53179 * 109.54682 * 294.55917 * 15 14 13 17 17 C 1.53094 * 109.16243 * 183.15094 * 16 15 14 18 18 O 1.42904 * 109.41306 * 57.61175 * 17 16 15 19 19 C 1.42898 * 114.09913 * 298.83801 * 18 17 16 20 20 C 1.53092 * 109.41670 * 61.15821 * 19 18 17 21 21 H 1.08998 * 109.47432 * 175.39512 * 1 2 3 22 22 H 1.09001 * 109.47169 * 295.39839 * 1 2 3 23 23 H 1.09005 * 109.47430 * 55.39954 * 1 2 3 24 24 H 1.09002 * 109.47191 * 240.00112 * 2 1 3 25 25 H 1.09000 * 109.47302 * 119.99921 * 2 1 3 26 26 H 0.96991 * 120.00339 * 180.02562 * 8 7 5 27 27 H 1.00911 * 110.99953 * 278.09029 * 13 3 2 28 28 H 1.08996 * 109.47452 * 305.41815 * 14 13 3 29 29 H 1.09008 * 109.46558 * 65.42040 * 14 13 3 30 30 H 1.08997 * 109.54255 * 54.82796 * 15 14 13 31 31 H 1.08995 * 109.52479 * 303.05833 * 16 15 14 32 32 H 1.08997 * 109.51739 * 63.24980 * 16 15 14 33 33 H 1.08998 * 109.48165 * 297.63074 * 17 16 15 34 34 H 1.08998 * 109.47900 * 177.59070 * 17 16 15 35 35 H 1.08999 * 109.48235 * 301.17962 * 19 18 17 36 36 H 1.08997 * 109.49454 * 181.14643 * 19 18 17 37 37 H 1.08991 * 109.52926 * 182.48523 * 20 19 18 38 38 H 1.09004 * 109.51735 * 62.29587 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6033 1.9822 0.8404 5 6 3.5416 1.4444 0.1273 6 1 4.1487 1.8883 -0.6479 7 6 4.1404 0.8793 1.2332 8 7 3.4012 0.3391 2.1773 9 14 6.0017 0.8823 1.3913 10 1 6.5982 1.5464 0.2046 11 1 6.3930 1.6188 2.6201 12 1 6.4937 -0.5163 1.4747 13 7 1.6542 2.0983 -1.2566 14 6 1.5550 3.5535 -1.0822 15 6 1.0226 4.1863 -2.3694 16 6 2.0425 3.9923 -3.4957 17 6 1.5373 4.6962 -4.7579 18 8 1.3220 6.0805 -4.4758 19 6 0.3433 6.3244 -3.4636 20 6 0.8005 5.6859 -2.1494 21 1 -0.3634 -1.0243 -0.0825 22 1 -0.3633 0.4408 0.9283 23 1 -0.3634 0.5836 -0.8459 24 1 1.8933 -0.5138 -0.8900 25 1 1.8933 -0.5138 0.8900 26 1 3.8224 -0.0581 2.9555 27 1 2.2979 1.8660 -1.9982 28 1 0.8748 3.7754 -0.2599 29 1 2.5411 3.9606 -0.8581 30 1 0.0794 3.7145 -2.6446 31 1 2.9996 4.4206 -3.1982 32 1 2.1652 2.9281 -3.6965 33 1 0.6003 4.2404 -5.0779 34 1 2.2790 4.5978 -5.5505 35 1 -0.6093 5.8899 -3.7666 36 1 0.2247 7.3988 -3.3237 37 1 0.0351 5.8328 -1.3874 38 1 1.7326 6.1484 -1.8247 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000054183945.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:50:18 Heat of formation + Delta-G solvation = -73.494352 kcal Electronic energy + Delta-G solvation = -16438.469701 eV Core-core repulsion = 13893.713540 eV Total energy + Delta-G solvation = -2544.756161 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.27629 -36.40799 -34.21733 -31.90794 -31.02197 -30.55394 -27.10085 -25.26651 -23.44310 -22.79379 -21.54060 -19.73345 -19.37519 -16.71294 -15.99999 -15.90271 -14.93951 -14.81783 -14.53892 -13.98100 -13.36212 -13.23232 -13.02700 -12.53004 -12.32427 -11.80151 -11.61762 -11.26323 -11.17618 -11.14134 -10.86864 -10.71977 -10.60881 -10.24012 -10.19886 -9.99653 -9.63537 -9.57904 -9.20462 -9.03503 -8.38533 -7.24141 -6.00286 -4.13374 3.24912 3.33532 3.36793 3.94860 4.38631 4.86314 4.96488 5.08861 5.15797 5.24526 5.30897 5.46758 5.62624 5.69061 5.75380 5.91697 5.97300 6.10120 6.24531 6.34116 6.38020 6.43504 6.52487 6.57819 6.71730 6.78228 7.13979 7.18038 7.25900 7.44849 7.59715 7.77581 8.09587 8.15336 8.34119 8.67214 9.00123 9.54422 10.99766 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.028618 B = 0.006746 C = 0.005955 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 978.163022 B = 4149.878788 C = 4700.736043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.106 4.106 3 C 0.214 3.786 4 H 0.031 0.969 5 C -0.544 4.544 6 H 0.053 0.947 7 C 0.067 3.933 8 N -0.885 5.885 9 Si 0.888 3.112 10 H -0.275 1.275 11 H -0.284 1.284 12 H -0.283 1.283 13 N -0.690 5.690 14 C 0.074 3.926 15 C -0.086 4.086 16 C -0.150 4.150 17 C 0.062 3.938 18 O -0.389 6.389 19 C 0.063 3.937 20 C -0.151 4.151 21 H 0.024 0.976 22 H 0.035 0.965 23 H 0.049 0.951 24 H 0.029 0.971 25 H 0.090 0.910 26 H 0.261 0.739 27 H 0.326 0.674 28 H 0.059 0.941 29 H 0.026 0.974 30 H 0.074 0.926 31 H 0.067 0.933 32 H 0.078 0.922 33 H 0.048 0.952 34 H 0.089 0.911 35 H 0.047 0.953 36 H 0.088 0.912 37 H 0.071 0.929 38 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.253 7.314 -9.073 12.783 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.144 4.144 3 C 0.106 3.894 4 H 0.049 0.951 5 C -0.583 4.583 6 H 0.071 0.929 7 C -0.136 4.136 8 N -0.524 5.524 9 Si 0.716 3.284 10 H -0.199 1.199 11 H -0.210 1.210 12 H -0.209 1.209 13 N -0.319 5.319 14 C -0.056 4.056 15 C -0.105 4.105 16 C -0.188 4.188 17 C -0.015 4.015 18 O -0.308 6.308 19 C -0.014 4.014 20 C -0.189 4.189 21 H 0.043 0.957 22 H 0.054 0.946 23 H 0.068 0.932 24 H 0.048 0.952 25 H 0.108 0.892 26 H 0.071 0.929 27 H 0.142 0.858 28 H 0.078 0.922 29 H 0.045 0.955 30 H 0.092 0.908 31 H 0.086 0.914 32 H 0.097 0.903 33 H 0.066 0.934 34 H 0.107 0.893 35 H 0.065 0.935 36 H 0.106 0.894 37 H 0.090 0.910 38 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -5.821 7.255 -8.879 12.859 hybrid contribution 1.927 -0.072 0.517 1.997 sum -3.894 7.183 -8.362 11.691 Atomic orbital electron populations 1.21711 0.99057 0.98450 1.00333 1.21491 0.92081 0.99286 1.01591 1.19137 0.92809 0.91249 0.86210 0.95138 1.21907 0.92816 1.38072 1.05504 0.92879 1.24936 0.97915 0.95004 0.95716 1.69888 1.34705 1.38402 1.09386 0.86610 0.86099 0.77753 0.77960 1.19935 1.21035 1.20925 1.60906 1.54780 1.06156 1.10057 1.21754 0.98758 0.90132 0.94992 1.21233 0.99088 0.94107 0.96057 1.22226 0.99617 1.01479 0.95474 1.22588 1.00089 0.81699 0.97082 1.87883 1.60716 1.24916 1.57268 1.22546 0.90846 1.00368 0.87630 1.22221 1.02405 0.96554 0.97753 0.95679 0.94597 0.93165 0.95186 0.89219 0.92940 0.85759 0.92239 0.95527 0.90796 0.91399 0.90347 0.93405 0.89327 0.93457 0.89375 0.91011 0.91202 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.86 9.85 37.15 0.37 -2.49 16 2 C -0.11 -2.54 5.45 -26.74 -0.15 -2.69 16 3 C 0.21 5.28 1.97 -68.86 -0.14 5.15 16 4 H 0.03 0.84 7.70 -51.93 -0.40 0.44 16 5 C -0.54 -14.67 8.47 -34.44 -0.29 -14.96 16 6 H 0.05 1.43 7.73 -52.48 -0.41 1.02 16 7 C 0.07 1.83 5.29 -17.82 -0.09 1.73 16 8 N -0.89 -25.08 11.29 55.43 0.63 -24.46 16 9 Si 0.89 21.18 29.54 -169.99 -5.02 16.16 16 10 H -0.27 -6.51 7.11 56.52 0.40 -6.10 16 11 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 12 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 13 N -0.69 -14.23 5.58 -107.95 -0.60 -14.83 16 14 C 0.07 1.36 4.97 -3.83 -0.02 1.34 16 15 C -0.09 -1.26 2.48 -90.43 -0.22 -1.49 16 16 C -0.15 -2.10 5.12 -26.59 -0.14 -2.23 16 17 C 0.06 0.76 6.84 37.21 0.25 1.02 16 18 O -0.39 -5.32 10.77 -35.23 -0.38 -5.70 16 19 C 0.06 0.73 6.84 37.21 0.25 0.99 16 20 C -0.15 -1.94 5.42 -26.59 -0.14 -2.09 16 21 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 22 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 23 H 0.05 1.00 7.64 -51.93 -0.40 0.60 16 24 H 0.03 0.71 8.14 -51.93 -0.42 0.28 16 25 H 0.09 2.41 5.95 -51.93 -0.31 2.10 16 26 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 27 H 0.33 6.65 6.95 -39.29 -0.27 6.37 16 28 H 0.06 1.13 7.92 -51.93 -0.41 0.72 16 29 H 0.03 0.54 8.12 -51.92 -0.42 0.12 16 30 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 31 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 32 H 0.08 1.10 6.98 -51.93 -0.36 0.74 16 33 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 34 H 0.09 0.97 8.14 -51.93 -0.42 0.54 16 35 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.09 0.88 8.14 -51.93 -0.42 0.45 16 37 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 38 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 LS Contribution 298.08 15.07 4.49 4.49 Total: -1.00 -27.99 298.08 -7.97 -35.96 By element: Atomic # 1 Polarization: 10.86 SS G_CDS: -6.76 Total: 4.09 kcal Atomic # 6 Polarization: -15.40 SS G_CDS: -0.32 Total: -15.72 kcal Atomic # 7 Polarization: -39.31 SS G_CDS: 0.02 Total: -39.29 kcal Atomic # 8 Polarization: -5.32 SS G_CDS: -0.38 Total: -5.70 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.16 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -27.99 -7.97 -35.96 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054183945.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.536 kcal (2) G-P(sol) polarization free energy of solvation -27.992 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.529 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.966 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.958 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.494 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds