Wall clock time and date at job start Sun Mar 29 2020 21:50:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.52999 * 109.47376 * 2 1 4 4 H 1.09005 * 109.46819 * 54.85681 * 3 2 1 5 5 C 1.50703 * 109.47354 * 174.85983 * 3 2 1 6 6 H 1.08007 * 119.99840 * 120.00027 * 5 3 2 7 7 C 1.37869 * 120.00061 * 300.00329 * 5 3 2 8 8 N 1.31520 * 120.00222 * 359.97438 * 7 5 3 9 9 Si 1.86802 * 119.99958 * 180.02562 * 7 5 3 10 10 H 1.48493 * 109.47112 * 359.97438 * 9 7 5 11 11 H 1.48506 * 109.47073 * 119.99829 * 9 7 5 12 12 H 1.48500 * 109.47030 * 239.99786 * 9 7 5 13 13 N 1.46899 * 109.47383 * 294.86351 * 3 2 1 14 14 C 1.46896 * 111.00459 * 154.12914 * 13 3 2 15 15 C 1.52997 * 109.47212 * 185.41239 * 14 13 3 16 16 C 1.53179 * 109.54682 * 294.55917 * 15 14 13 17 17 C 1.53094 * 109.16243 * 183.15094 * 16 15 14 18 18 O 1.42904 * 109.41306 * 57.61175 * 17 16 15 19 19 C 1.42898 * 114.09913 * 298.83801 * 18 17 16 20 20 C 1.53092 * 109.41670 * 61.15821 * 19 18 17 21 21 H 1.08998 * 109.47432 * 175.39512 * 1 2 3 22 22 H 1.09001 * 109.47169 * 295.39839 * 1 2 3 23 23 H 1.09005 * 109.47430 * 55.39954 * 1 2 3 24 24 H 1.09002 * 109.47191 * 240.00112 * 2 1 3 25 25 H 1.09000 * 109.47302 * 119.99921 * 2 1 3 26 26 H 0.96991 * 120.00339 * 180.02562 * 8 7 5 27 27 H 1.00911 * 110.99953 * 278.09029 * 13 3 2 28 28 H 1.08996 * 109.47452 * 305.41815 * 14 13 3 29 29 H 1.09008 * 109.46558 * 65.42040 * 14 13 3 30 30 H 1.08997 * 109.54255 * 54.82796 * 15 14 13 31 31 H 1.08995 * 109.52479 * 303.05833 * 16 15 14 32 32 H 1.08997 * 109.51739 * 63.24980 * 16 15 14 33 33 H 1.08998 * 109.48165 * 297.63074 * 17 16 15 34 34 H 1.08998 * 109.47900 * 177.59070 * 17 16 15 35 35 H 1.08999 * 109.48235 * 301.17962 * 19 18 17 36 36 H 1.08997 * 109.49454 * 181.14643 * 19 18 17 37 37 H 1.08991 * 109.52926 * 182.48523 * 20 19 18 38 38 H 1.09004 * 109.51735 * 62.29587 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6033 1.9822 0.8404 5 6 3.5416 1.4444 0.1273 6 1 4.1487 1.8883 -0.6479 7 6 4.1404 0.8793 1.2332 8 7 3.4012 0.3391 2.1773 9 14 6.0017 0.8823 1.3913 10 1 6.5982 1.5464 0.2046 11 1 6.3930 1.6188 2.6201 12 1 6.4937 -0.5163 1.4747 13 7 1.6542 2.0983 -1.2566 14 6 1.5550 3.5535 -1.0822 15 6 1.0226 4.1863 -2.3694 16 6 2.0425 3.9923 -3.4957 17 6 1.5373 4.6962 -4.7579 18 8 1.3220 6.0805 -4.4758 19 6 0.3433 6.3244 -3.4636 20 6 0.8005 5.6859 -2.1494 21 1 -0.3634 -1.0243 -0.0825 22 1 -0.3633 0.4408 0.9283 23 1 -0.3634 0.5836 -0.8459 24 1 1.8933 -0.5138 -0.8900 25 1 1.8933 -0.5138 0.8900 26 1 3.8224 -0.0581 2.9555 27 1 2.2979 1.8660 -1.9982 28 1 0.8748 3.7754 -0.2599 29 1 2.5411 3.9606 -0.8581 30 1 0.0794 3.7145 -2.6446 31 1 2.9996 4.4206 -3.1982 32 1 2.1652 2.9281 -3.6965 33 1 0.6003 4.2404 -5.0779 34 1 2.2790 4.5978 -5.5505 35 1 -0.6093 5.8899 -3.7666 36 1 0.2247 7.3988 -3.3237 37 1 0.0351 5.8328 -1.3874 38 1 1.7326 6.1484 -1.8247 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000054183945.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:50:18 Heat of formation + Delta-G solvation = -90.881832 kcal Electronic energy + Delta-G solvation = -16439.223679 eV Core-core repulsion = 13893.713540 eV Total energy + Delta-G solvation = -2545.510139 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.35759 -38.09460 -35.71479 -33.82988 -32.32754 -31.90475 -28.82969 -26.87567 -24.70626 -24.35406 -22.90588 -21.40831 -20.79859 -18.75790 -17.08448 -16.91763 -16.74216 -16.36520 -15.63571 -15.56416 -14.92448 -14.73939 -14.52470 -14.14505 -13.58040 -13.37120 -13.13972 -13.03766 -12.94782 -12.67344 -12.44779 -12.20143 -12.05202 -11.92315 -11.54041 -11.50291 -11.30838 -11.07386 -10.98816 -10.49693 -10.36265 -9.06417 -8.07694 -6.30369 1.34772 1.37569 1.47484 2.37776 3.02077 3.11609 3.58107 3.83622 3.99018 4.07239 4.19477 4.35408 4.53065 4.56585 4.61782 4.74339 4.76197 4.79129 4.83950 4.92174 4.95648 5.05044 5.06551 5.16018 5.20538 5.29135 5.41869 5.47996 5.52289 5.63619 5.76948 6.09568 6.19460 6.31124 6.37357 6.81027 7.00631 7.41405 8.88867 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.028618 B = 0.006746 C = 0.005955 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 978.163022 B = 4149.878788 C = 4700.736043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.102 4.102 3 C 0.220 3.780 4 H -0.003 1.003 5 C -0.559 4.559 6 H 0.048 0.952 7 C 0.019 3.981 8 N -0.911 5.911 9 Si 0.950 3.050 10 H -0.271 1.271 11 H -0.282 1.282 12 H -0.278 1.278 13 N -0.678 5.678 14 C 0.078 3.922 15 C -0.077 4.077 16 C -0.148 4.148 17 C 0.065 3.935 18 O -0.405 6.405 19 C 0.063 3.937 20 C -0.148 4.148 21 H 0.046 0.954 22 H 0.029 0.971 23 H 0.059 0.941 24 H 0.029 0.971 25 H 0.060 0.940 26 H 0.262 0.738 27 H 0.329 0.671 28 H 0.050 0.950 29 H 0.004 0.996 30 H 0.080 0.920 31 H 0.051 0.949 32 H 0.075 0.925 33 H 0.062 0.938 34 H 0.103 0.897 35 H 0.062 0.938 36 H 0.107 0.893 37 H 0.082 0.918 38 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.646 7.803 -10.399 14.174 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.141 4.141 3 C 0.111 3.889 4 H 0.015 0.985 5 C -0.599 4.599 6 H 0.066 0.934 7 C -0.181 4.181 8 N -0.550 5.550 9 Si 0.776 3.224 10 H -0.196 1.196 11 H -0.208 1.208 12 H -0.203 1.203 13 N -0.307 5.307 14 C -0.053 4.053 15 C -0.096 4.096 16 C -0.186 4.186 17 C -0.012 4.012 18 O -0.324 6.324 19 C -0.014 4.014 20 C -0.187 4.187 21 H 0.065 0.935 22 H 0.048 0.952 23 H 0.078 0.922 24 H 0.047 0.953 25 H 0.078 0.922 26 H 0.072 0.928 27 H 0.146 0.854 28 H 0.068 0.932 29 H 0.022 0.978 30 H 0.098 0.902 31 H 0.070 0.930 32 H 0.094 0.906 33 H 0.080 0.920 34 H 0.121 0.879 35 H 0.080 0.920 36 H 0.125 0.875 37 H 0.101 0.899 38 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -6.221 7.752 -10.217 14.254 hybrid contribution 2.036 -0.209 0.950 2.257 sum -4.185 7.543 -9.267 12.661 Atomic orbital electron populations 1.21571 0.96353 1.00011 1.00401 1.21353 0.94485 0.98275 1.00003 1.18931 0.91558 0.91681 0.86746 0.98532 1.22198 0.94151 1.37978 1.05524 0.93401 1.25667 1.02124 0.94760 0.95501 1.70010 1.36338 1.38905 1.09774 0.85638 0.81041 0.77867 0.77866 1.19583 1.20757 1.20326 1.60852 1.54197 1.07347 1.08285 1.21777 0.97530 0.88855 0.97092 1.21135 0.99183 0.95211 0.94064 1.22194 0.98685 1.01501 0.96221 1.22637 1.01167 0.81103 0.96252 1.87871 1.61377 1.25478 1.57703 1.22676 0.90887 1.01593 0.86199 1.22205 1.02324 0.94948 0.99182 0.93502 0.95230 0.92156 0.95255 0.92194 0.92843 0.85405 0.93151 0.97808 0.90214 0.92973 0.90609 0.91979 0.87898 0.91992 0.87450 0.89927 0.92376 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.09 9.85 71.98 0.71 -4.38 16 2 C -0.10 -4.95 5.45 30.59 0.17 -4.79 16 3 C 0.22 11.05 1.97 44.17 0.09 11.14 16 4 H 0.00 -0.19 7.70 -2.38 -0.02 -0.21 16 5 C -0.56 -30.65 8.47 25.60 0.22 -30.43 16 6 H 0.05 2.61 7.73 -2.91 -0.02 2.59 16 7 C 0.02 1.08 5.29 84.65 0.45 1.52 16 8 N -0.91 -52.47 11.29 21.45 0.24 -52.23 16 9 Si 0.95 43.73 29.54 68.60 2.03 45.76 16 10 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 11 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 12 H -0.28 -12.47 7.11 99.48 0.71 -11.77 16 13 N -0.68 -28.00 5.58 -495.45 -2.77 -30.77 16 14 C 0.08 2.88 4.97 86.30 0.43 3.31 16 15 C -0.08 -2.18 2.48 -10.67 -0.03 -2.21 16 16 C -0.15 -3.97 5.12 30.69 0.16 -3.81 16 17 C 0.06 1.45 6.84 72.01 0.49 1.94 16 18 O -0.40 -10.11 10.77 -148.98 -1.60 -11.72 16 19 C 0.06 1.30 6.84 72.01 0.49 1.79 16 20 C -0.15 -3.59 5.42 30.69 0.17 -3.42 16 21 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 22 H 0.03 1.20 8.14 -2.39 -0.02 1.18 16 23 H 0.06 2.30 7.64 -2.38 -0.02 2.28 16 24 H 0.03 1.38 8.14 -2.39 -0.02 1.36 16 25 H 0.06 3.27 5.95 -2.39 -0.01 3.26 16 26 H 0.26 14.33 8.31 -92.71 -0.77 13.56 16 27 H 0.33 13.37 6.95 -89.69 -0.62 12.75 16 28 H 0.05 1.94 7.92 -2.39 -0.02 1.92 16 29 H 0.00 0.15 8.12 -2.38 -0.02 0.13 16 30 H 0.08 2.21 8.14 -2.39 -0.02 2.19 16 31 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 32 H 0.08 2.05 6.98 -2.39 -0.02 2.03 16 33 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 34 H 0.10 1.99 8.14 -2.39 -0.02 1.97 16 35 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 36 H 0.11 1.82 8.14 -2.39 -0.02 1.80 16 37 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 38 H 0.06 1.54 8.14 -2.38 -0.02 1.52 16 Total: -1.00 -59.68 298.08 1.62 -58.06 By element: Atomic # 1 Polarization: 19.84 SS G_CDS: 0.38 Total: 20.23 kcal Atomic # 6 Polarization: -32.67 SS G_CDS: 3.34 Total: -29.33 kcal Atomic # 7 Polarization: -80.47 SS G_CDS: -2.52 Total: -83.00 kcal Atomic # 8 Polarization: -10.11 SS G_CDS: -1.60 Total: -11.72 kcal Atomic # 14 Polarization: 43.73 SS G_CDS: 2.03 Total: 45.76 kcal Total: -59.68 1.62 -58.06 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054183945.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.824 kcal (2) G-P(sol) polarization free energy of solvation -59.680 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.505 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.623 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.057 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.882 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds