Wall clock time and date at job start Sun Mar 29 2020 21:50:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52999 * 109.46876 * 2 1 4 4 H 1.08997 * 109.47618 * 305.65526 * 3 2 1 5 5 C 1.50702 * 109.46570 * 185.65637 * 3 2 1 6 6 H 1.07996 * 120.00462 * 239.99756 * 5 3 2 7 7 C 1.37882 * 119.99867 * 60.00684 * 5 3 2 8 8 N 1.31506 * 119.99985 * 359.97438 * 7 5 3 9 9 Si 1.86797 * 120.00018 * 179.97438 * 7 5 3 10 10 H 1.48502 * 109.47404 * 59.99441 * 9 7 5 11 11 H 1.48495 * 109.47441 * 179.97438 * 9 7 5 12 12 H 1.48496 * 109.47189 * 299.99834 * 9 7 5 13 13 N 1.46902 * 109.47070 * 65.66216 * 3 2 1 14 14 C 1.46897 * 110.99555 * 205.55704 * 13 3 2 15 15 C 1.53005 * 109.47009 * 184.36216 * 14 13 3 16 16 C 1.53174 * 109.54500 * 185.00215 * 15 14 13 17 17 C 1.53094 * 109.16185 * 183.15322 * 16 15 14 18 18 O 1.42901 * 109.41749 * 57.60651 * 17 16 15 19 19 C 1.42903 * 114.09759 * 298.84369 * 18 17 16 20 20 C 1.53091 * 109.41348 * 61.15698 * 19 18 17 21 21 H 1.08994 * 109.47362 * 55.58778 * 1 2 3 22 22 H 1.08998 * 109.47421 * 175.59323 * 1 2 3 23 23 H 1.09004 * 109.46617 * 295.59424 * 1 2 3 24 24 H 1.09000 * 109.46667 * 240.00219 * 2 1 3 25 25 H 1.08997 * 109.46872 * 120.00156 * 2 1 3 26 26 H 0.97003 * 120.00080 * 180.02562 * 8 7 5 27 27 H 1.00900 * 111.00114 * 329.51328 * 13 3 2 28 28 H 1.08999 * 109.47100 * 64.36511 * 14 13 3 29 29 H 1.08996 * 109.47745 * 304.35892 * 14 13 3 30 30 H 1.09001 * 109.61478 * 305.22879 * 15 14 13 31 31 H 1.09002 * 109.52377 * 63.24783 * 16 15 14 32 32 H 1.09001 * 109.52167 * 303.05872 * 16 15 14 33 33 H 1.09000 * 109.48002 * 177.59121 * 17 16 15 34 34 H 1.09004 * 109.47864 * 297.61230 * 17 16 15 35 35 H 1.09005 * 109.47766 * 181.13698 * 19 18 17 36 36 H 1.08998 * 109.47919 * 301.17306 * 19 18 17 37 37 H 1.08997 * 109.52764 * 62.29773 * 20 19 18 38 38 H 1.09000 * 109.51669 * 182.48474 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5964 1.9848 -0.8350 5 6 3.5405 1.4447 -0.1400 6 1 4.1542 1.8863 0.6311 7 6 4.1299 0.8831 -1.2529 8 7 3.3826 0.3451 -2.1918 9 14 5.9897 0.8865 -1.4268 10 1 6.5947 0.1481 -0.2893 11 1 6.3688 0.2269 -2.7021 12 1 6.4843 2.2867 -1.4271 13 7 1.6651 2.0944 1.2619 14 6 1.5715 3.5508 1.0945 15 6 1.2870 4.2027 2.4491 16 6 1.0654 5.7062 2.2579 17 6 0.8598 6.3619 3.6259 18 8 1.9940 6.0984 4.4543 19 6 2.2224 4.7105 4.7067 20 6 2.4829 3.9886 3.3821 21 1 -0.3634 0.5807 -0.8478 22 1 -0.3634 -1.0246 -0.0790 23 1 -0.3633 0.4440 0.9269 24 1 1.8933 -0.5138 -0.8900 25 1 1.8934 -0.5138 0.8900 26 1 3.7972 -0.0503 -2.9745 27 1 0.8020 1.7156 1.6221 28 1 0.7636 3.7857 0.4014 29 1 2.5125 3.9323 0.6983 30 1 0.3959 3.7559 2.8902 31 1 0.1824 5.8686 1.6397 32 1 1.9372 6.1439 1.7715 33 1 0.7442 7.4383 3.4994 34 1 -0.0354 5.9527 4.0942 35 1 3.0886 4.5974 5.3587 36 1 1.3452 4.2797 5.1892 37 1 3.3832 4.3915 2.9184 38 1 2.6136 2.9225 3.5679 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000054183946.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:50:20 Heat of formation + Delta-G solvation = -69.981953 kcal Electronic energy + Delta-G solvation = -16455.521827 eV Core-core repulsion = 13910.917975 eV Total energy + Delta-G solvation = -2544.603852 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.21343 -36.49339 -34.21678 -31.96784 -30.93768 -30.52450 -27.08378 -25.39686 -23.32980 -22.85293 -21.51912 -19.93027 -19.30325 -16.27827 -15.99276 -15.84314 -14.90129 -14.60977 -14.47061 -14.37318 -13.77555 -13.27721 -12.80237 -12.41244 -12.15528 -11.96144 -11.83733 -11.37347 -11.15340 -11.11177 -10.82862 -10.65098 -10.46843 -10.30204 -10.07516 -9.94164 -9.72728 -9.62514 -9.17619 -9.05174 -8.32613 -7.18471 -5.94987 -3.98971 3.35116 3.39120 3.42717 4.00324 4.46056 4.86210 5.01173 5.11435 5.26077 5.30543 5.34652 5.54930 5.63367 5.65685 5.80824 5.94572 6.06120 6.12935 6.16169 6.17504 6.21153 6.40677 6.42401 6.49453 6.66584 6.81496 6.84603 7.09200 7.20887 7.32052 7.51613 7.79614 7.93656 8.33437 8.41930 8.78893 9.08884 9.65907 11.10424 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.026972 B = 0.007027 C = 0.006065 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1037.855389 B = 3983.741309 C = 4615.367270 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.126 4.126 3 C 0.219 3.781 4 H 0.000 1.000 5 C -0.492 4.492 6 H 0.060 0.940 7 C 0.054 3.946 8 N -0.898 5.898 9 Si 0.895 3.105 10 H -0.278 1.278 11 H -0.289 1.289 12 H -0.279 1.279 13 N -0.685 5.685 14 C 0.075 3.925 15 C -0.084 4.084 16 C -0.152 4.152 17 C 0.064 3.936 18 O -0.389 6.389 19 C 0.058 3.942 20 C -0.138 4.138 21 H 0.041 0.959 22 H 0.037 0.963 23 H 0.034 0.966 24 H 0.099 0.901 25 H 0.040 0.960 26 H 0.259 0.741 27 H 0.314 0.686 28 H 0.012 0.988 29 H 0.073 0.927 30 H 0.061 0.939 31 H 0.068 0.932 32 H 0.072 0.928 33 H 0.088 0.912 34 H 0.045 0.955 35 H 0.089 0.911 36 H 0.044 0.956 37 H 0.068 0.932 38 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.795 7.045 8.977 12.799 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.164 4.164 3 C 0.112 3.888 4 H 0.018 0.982 5 C -0.531 4.531 6 H 0.079 0.921 7 C -0.146 4.146 8 N -0.538 5.538 9 Si 0.723 3.277 10 H -0.203 1.203 11 H -0.215 1.215 12 H -0.204 1.204 13 N -0.316 5.316 14 C -0.055 4.055 15 C -0.103 4.103 16 C -0.190 4.190 17 C -0.013 4.013 18 O -0.308 6.308 19 C -0.018 4.018 20 C -0.176 4.176 21 H 0.060 0.940 22 H 0.056 0.944 23 H 0.053 0.947 24 H 0.117 0.883 25 H 0.059 0.941 26 H 0.069 0.931 27 H 0.131 0.869 28 H 0.030 0.970 29 H 0.092 0.908 30 H 0.080 0.920 31 H 0.087 0.913 32 H 0.090 0.910 33 H 0.106 0.894 34 H 0.063 0.937 35 H 0.107 0.893 36 H 0.063 0.937 37 H 0.087 0.913 38 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -5.001 7.108 9.094 12.579 hybrid contribution -0.058 -0.233 -0.913 0.944 sum -5.059 6.875 8.180 11.823 Atomic orbital electron populations 1.21878 0.99669 0.99627 0.99513 1.21767 0.91168 1.00437 1.03030 1.19134 0.95422 0.89923 0.84363 0.98243 1.21178 0.91305 1.36429 1.04164 0.92140 1.24960 0.98050 0.95697 0.95878 1.69860 1.34743 1.39557 1.09603 0.86618 0.85847 0.78135 0.77118 1.20322 1.21474 1.20442 1.60669 1.36046 1.02111 1.32739 1.21829 1.00140 0.90156 0.93424 1.21191 0.98071 0.93887 0.97176 1.22232 1.02634 0.96560 0.97587 1.22520 0.88312 1.00145 0.90325 1.87882 1.48443 1.24996 1.69503 1.22679 1.00513 0.81406 0.97202 1.22091 0.98583 1.02121 0.94799 0.93955 0.94424 0.94658 0.88293 0.94078 0.93064 0.86907 0.96966 0.90824 0.92041 0.91331 0.90952 0.89431 0.93661 0.89307 0.93728 0.91303 0.89411 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.89 9.67 37.16 0.36 -2.53 16 2 C -0.13 -2.95 5.36 -26.73 -0.14 -3.10 16 3 C 0.22 5.43 2.02 -68.86 -0.14 5.29 16 4 H 0.00 0.00 7.84 -51.93 -0.41 -0.41 16 5 C -0.49 -13.57 8.58 -34.44 -0.30 -13.87 16 6 H 0.06 1.69 7.81 -52.49 -0.41 1.28 16 7 C 0.05 1.51 5.29 -17.82 -0.09 1.42 16 8 N -0.90 -25.65 11.29 55.43 0.63 -25.02 16 9 Si 0.89 21.63 29.54 -169.99 -5.02 16.61 16 10 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 11 H -0.29 -6.93 7.11 56.52 0.40 -6.52 16 12 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 13 N -0.68 -14.22 5.81 -107.95 -0.63 -14.85 16 14 C 0.07 1.39 4.85 -3.82 -0.02 1.37 16 15 C -0.08 -1.26 2.45 -90.44 -0.22 -1.48 16 16 C -0.15 -1.98 5.42 -26.59 -0.14 -2.12 16 17 C 0.06 0.76 6.84 37.21 0.25 1.01 16 18 O -0.39 -5.50 10.77 -35.23 -0.38 -5.88 16 19 C 0.06 0.76 6.84 37.20 0.25 1.02 16 20 C -0.14 -2.08 5.27 -26.59 -0.14 -2.22 16 21 H 0.04 0.83 8.14 -51.93 -0.42 0.40 16 22 H 0.04 0.66 8.14 -51.93 -0.42 0.23 16 23 H 0.03 0.61 6.61 -51.93 -0.34 0.26 16 24 H 0.10 2.63 5.94 -51.93 -0.31 2.32 16 25 H 0.04 0.96 8.14 -51.93 -0.42 0.54 16 26 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 27 H 0.31 5.98 6.62 -39.29 -0.26 5.72 16 28 H 0.01 0.23 8.13 -51.93 -0.42 -0.19 16 29 H 0.07 1.54 7.95 -51.93 -0.41 1.13 16 30 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 31 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 32 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 33 H 0.09 0.89 8.14 -51.93 -0.42 0.46 16 34 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 36 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 38 H 0.09 1.42 7.87 -51.93 -0.41 1.01 16 LS Contribution 297.97 15.07 4.49 4.49 Total: -1.00 -28.48 297.97 -8.00 -36.48 By element: Atomic # 1 Polarization: 10.15 SS G_CDS: -6.76 Total: 3.39 kcal Atomic # 6 Polarization: -14.89 SS G_CDS: -0.33 Total: -15.22 kcal Atomic # 7 Polarization: -39.87 SS G_CDS: 0.00 Total: -39.87 kcal Atomic # 8 Polarization: -5.50 SS G_CDS: -0.38 Total: -5.88 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.61 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -28.48 -8.00 -36.48 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054183946.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.502 kcal (2) G-P(sol) polarization free energy of solvation -28.482 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.984 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.998 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.480 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.982 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds