Wall clock time and date at job start Sun Mar 29 2020 21:50:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52999 * 109.46876 * 2 1 4 4 H 1.08997 * 109.47618 * 305.65526 * 3 2 1 5 5 C 1.50702 * 109.46570 * 185.65637 * 3 2 1 6 6 H 1.07996 * 120.00462 * 239.99756 * 5 3 2 7 7 C 1.37882 * 119.99867 * 60.00684 * 5 3 2 8 8 N 1.31506 * 119.99985 * 359.97438 * 7 5 3 9 9 Si 1.86797 * 120.00018 * 179.97438 * 7 5 3 10 10 H 1.48502 * 109.47404 * 59.99441 * 9 7 5 11 11 H 1.48495 * 109.47441 * 179.97438 * 9 7 5 12 12 H 1.48496 * 109.47189 * 299.99834 * 9 7 5 13 13 N 1.46902 * 109.47070 * 65.66216 * 3 2 1 14 14 C 1.46897 * 110.99555 * 205.55704 * 13 3 2 15 15 C 1.53005 * 109.47009 * 184.36216 * 14 13 3 16 16 C 1.53174 * 109.54500 * 185.00215 * 15 14 13 17 17 C 1.53094 * 109.16185 * 183.15322 * 16 15 14 18 18 O 1.42901 * 109.41749 * 57.60651 * 17 16 15 19 19 C 1.42903 * 114.09759 * 298.84369 * 18 17 16 20 20 C 1.53091 * 109.41348 * 61.15698 * 19 18 17 21 21 H 1.08994 * 109.47362 * 55.58778 * 1 2 3 22 22 H 1.08998 * 109.47421 * 175.59323 * 1 2 3 23 23 H 1.09004 * 109.46617 * 295.59424 * 1 2 3 24 24 H 1.09000 * 109.46667 * 240.00219 * 2 1 3 25 25 H 1.08997 * 109.46872 * 120.00156 * 2 1 3 26 26 H 0.97003 * 120.00080 * 180.02562 * 8 7 5 27 27 H 1.00900 * 111.00114 * 329.51328 * 13 3 2 28 28 H 1.08999 * 109.47100 * 64.36511 * 14 13 3 29 29 H 1.08996 * 109.47745 * 304.35892 * 14 13 3 30 30 H 1.09001 * 109.61478 * 305.22879 * 15 14 13 31 31 H 1.09002 * 109.52377 * 63.24783 * 16 15 14 32 32 H 1.09001 * 109.52167 * 303.05872 * 16 15 14 33 33 H 1.09000 * 109.48002 * 177.59121 * 17 16 15 34 34 H 1.09004 * 109.47864 * 297.61230 * 17 16 15 35 35 H 1.09005 * 109.47766 * 181.13698 * 19 18 17 36 36 H 1.08998 * 109.47919 * 301.17306 * 19 18 17 37 37 H 1.08997 * 109.52764 * 62.29773 * 20 19 18 38 38 H 1.09000 * 109.51669 * 182.48474 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5964 1.9848 -0.8350 5 6 3.5405 1.4447 -0.1400 6 1 4.1542 1.8863 0.6311 7 6 4.1299 0.8831 -1.2529 8 7 3.3826 0.3451 -2.1918 9 14 5.9897 0.8865 -1.4268 10 1 6.5947 0.1481 -0.2893 11 1 6.3688 0.2269 -2.7021 12 1 6.4843 2.2867 -1.4271 13 7 1.6651 2.0944 1.2619 14 6 1.5715 3.5508 1.0945 15 6 1.2870 4.2027 2.4491 16 6 1.0654 5.7062 2.2579 17 6 0.8598 6.3619 3.6259 18 8 1.9940 6.0984 4.4543 19 6 2.2224 4.7105 4.7067 20 6 2.4829 3.9886 3.3821 21 1 -0.3634 0.5807 -0.8478 22 1 -0.3634 -1.0246 -0.0790 23 1 -0.3633 0.4440 0.9269 24 1 1.8933 -0.5138 -0.8900 25 1 1.8934 -0.5138 0.8900 26 1 3.7972 -0.0503 -2.9745 27 1 0.8020 1.7156 1.6221 28 1 0.7636 3.7857 0.4014 29 1 2.5125 3.9323 0.6983 30 1 0.3959 3.7559 2.8902 31 1 0.1824 5.8686 1.6397 32 1 1.9372 6.1439 1.7715 33 1 0.7442 7.4383 3.4994 34 1 -0.0354 5.9527 4.0942 35 1 3.0886 4.5974 5.3587 36 1 1.3452 4.2797 5.1892 37 1 3.3832 4.3915 2.9184 38 1 2.6136 2.9225 3.5679 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000054183946.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:50:20 Heat of formation + Delta-G solvation = -88.175253 kcal Electronic energy + Delta-G solvation = -16456.310747 eV Core-core repulsion = 13910.917975 eV Total energy + Delta-G solvation = -2545.392773 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.32896 -38.19310 -35.69614 -33.93506 -32.21988 -31.88603 -28.87395 -26.98642 -24.68738 -24.33682 -22.91422 -21.57421 -20.77139 -18.37648 -17.14380 -16.90442 -16.71603 -16.07295 -16.00563 -15.52792 -15.40568 -14.67290 -14.58043 -13.84109 -13.69960 -13.41102 -13.10717 -13.01626 -12.91416 -12.69166 -12.55755 -12.18242 -11.98984 -11.85976 -11.58670 -11.52940 -11.37544 -11.06104 -10.99111 -10.44432 -10.34834 -8.97619 -8.07608 -6.19505 1.40174 1.41251 1.49135 2.42670 3.03905 3.17157 3.55017 3.81739 4.01095 4.11752 4.20169 4.38906 4.47908 4.51613 4.56594 4.59267 4.67781 4.75581 4.78821 4.86120 4.94313 5.01662 5.04545 5.10364 5.21566 5.27237 5.37469 5.40278 5.52835 5.60132 5.74399 5.90021 6.33119 6.36136 6.51421 6.94244 7.02875 7.49522 8.95382 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.026972 B = 0.007027 C = 0.006065 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1037.855389 B = 3983.741309 C = 4615.367270 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.121 4.121 3 C 0.225 3.775 4 H -0.035 1.035 5 C -0.511 4.511 6 H 0.048 0.952 7 C 0.009 3.991 8 N -0.920 5.920 9 Si 0.953 3.047 10 H -0.273 1.273 11 H -0.283 1.283 12 H -0.276 1.276 13 N -0.681 5.681 14 C 0.078 3.922 15 C -0.076 4.076 16 C -0.149 4.149 17 C 0.063 3.937 18 O -0.406 6.406 19 C 0.063 3.937 20 C -0.136 4.136 21 H 0.034 0.966 22 H 0.057 0.943 23 H 0.059 0.941 24 H 0.066 0.934 25 H 0.037 0.963 26 H 0.260 0.740 27 H 0.328 0.672 28 H 0.013 0.987 29 H 0.041 0.959 30 H 0.078 0.922 31 H 0.084 0.916 32 H 0.057 0.943 33 H 0.107 0.893 34 H 0.063 0.937 35 H 0.099 0.901 36 H 0.063 0.937 37 H 0.045 0.955 38 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.664 7.544 10.385 14.462 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.160 4.160 3 C 0.116 3.884 4 H -0.018 1.018 5 C -0.550 4.550 6 H 0.066 0.934 7 C -0.189 4.189 8 N -0.561 5.561 9 Si 0.779 3.221 10 H -0.198 1.198 11 H -0.208 1.208 12 H -0.202 1.202 13 N -0.313 5.313 14 C -0.051 4.051 15 C -0.095 4.095 16 C -0.187 4.187 17 C -0.014 4.014 18 O -0.325 6.325 19 C -0.013 4.013 20 C -0.174 4.174 21 H 0.053 0.947 22 H 0.076 0.924 23 H 0.078 0.922 24 H 0.085 0.915 25 H 0.056 0.944 26 H 0.069 0.931 27 H 0.146 0.854 28 H 0.031 0.969 29 H 0.060 0.940 30 H 0.096 0.904 31 H 0.102 0.898 32 H 0.075 0.925 33 H 0.125 0.875 34 H 0.082 0.918 35 H 0.118 0.882 36 H 0.081 0.919 37 H 0.063 0.937 38 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -5.882 7.614 10.517 14.254 hybrid contribution 0.199 -0.370 -1.365 1.429 sum -5.683 7.244 9.152 12.981 Atomic orbital electron populations 1.21743 0.96202 1.01145 1.00483 1.21590 0.94284 0.98899 1.01200 1.18912 0.93920 0.90717 0.84811 1.01768 1.21451 0.92950 1.36509 1.04109 0.93381 1.25673 1.02207 0.95390 0.95619 1.69989 1.36262 1.39938 1.09879 0.85685 0.80911 0.78163 0.77298 1.19785 1.20792 1.20169 1.60541 1.36973 1.03259 1.30536 1.21803 0.98507 0.88960 0.95863 1.21124 0.98574 0.95151 0.94675 1.22216 1.02709 0.94845 0.98935 1.22681 0.88251 1.01399 0.89020 1.87870 1.49505 1.25327 1.69832 1.22678 1.01885 0.80894 0.95829 1.22030 0.97693 1.01473 0.96171 0.94666 0.92378 0.92205 0.91538 0.94378 0.93063 0.85409 0.96931 0.93997 0.90357 0.89782 0.92456 0.87452 0.91839 0.88247 0.91882 0.93652 0.90722 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.14 9.67 71.98 0.70 -4.45 16 2 C -0.12 -5.73 5.36 30.60 0.16 -5.56 16 3 C 0.22 11.38 2.02 44.17 0.09 11.47 16 4 H -0.04 -2.00 7.84 -2.39 -0.02 -2.02 16 5 C -0.51 -28.95 8.58 25.60 0.22 -28.73 16 6 H 0.05 2.77 7.81 -2.91 -0.02 2.75 16 7 C 0.01 0.52 5.29 84.66 0.45 0.96 16 8 N -0.92 -53.67 11.29 21.45 0.24 -53.42 16 9 Si 0.95 44.91 29.54 68.60 2.03 46.93 16 10 H -0.27 -12.55 7.11 99.48 0.71 -11.84 16 11 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 12 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 13 N -0.68 -28.32 5.81 -495.45 -2.88 -31.20 16 14 C 0.08 2.94 4.85 86.31 0.42 3.36 16 15 C -0.08 -2.19 2.45 -10.67 -0.03 -2.21 16 16 C -0.15 -3.62 5.42 30.68 0.17 -3.45 16 17 C 0.06 1.31 6.84 72.01 0.49 1.80 16 18 O -0.41 -10.53 10.77 -148.98 -1.60 -12.13 16 19 C 0.06 1.51 6.84 72.01 0.49 2.01 16 20 C -0.14 -4.00 5.27 30.68 0.16 -3.84 16 21 H 0.03 1.34 8.14 -2.39 -0.02 1.32 16 22 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 23 H 0.06 1.91 6.61 -2.38 -0.02 1.90 16 24 H 0.07 3.60 5.94 -2.39 -0.01 3.58 16 25 H 0.04 1.78 8.14 -2.39 -0.02 1.76 16 26 H 0.26 14.49 8.31 -92.71 -0.77 13.72 16 27 H 0.33 12.03 6.62 -89.69 -0.59 11.43 16 28 H 0.01 0.47 8.13 -2.39 -0.02 0.45 16 29 H 0.04 1.82 7.95 -2.39 -0.02 1.80 16 30 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 31 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 32 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 33 H 0.11 1.82 8.14 -2.39 -0.02 1.81 16 34 H 0.06 1.12 8.14 -2.38 -0.02 1.10 16 35 H 0.10 2.14 8.14 -2.38 -0.02 2.12 16 36 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 37 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16 38 H 0.07 2.38 7.87 -2.39 -0.02 2.36 16 Total: -1.00 -62.09 297.97 1.52 -60.57 By element: Atomic # 1 Polarization: 17.47 SS G_CDS: 0.41 Total: 17.89 kcal Atomic # 6 Polarization: -31.96 SS G_CDS: 3.32 Total: -28.64 kcal Atomic # 7 Polarization: -81.99 SS G_CDS: -2.64 Total: -84.63 kcal Atomic # 8 Polarization: -10.53 SS G_CDS: -1.60 Total: -12.13 kcal Atomic # 14 Polarization: 44.91 SS G_CDS: 2.03 Total: 46.93 kcal Total: -62.09 1.52 -60.57 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054183946.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.602 kcal (2) G-P(sol) polarization free energy of solvation -62.094 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.696 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.520 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.573 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.175 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds