Wall clock time and date at job start Sun Mar 29 2020 21:48:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53003 * 109.46885 * 2 1 4 4 H 1.09000 * 109.47310 * 303.11434 * 3 2 1 5 5 C 1.50701 * 109.46638 * 183.11578 * 3 2 1 6 6 H 1.08001 * 119.99640 * 239.99890 * 5 3 2 7 7 C 1.37872 * 120.00103 * 60.00665 * 5 3 2 8 8 N 1.31512 * 120.00119 * 359.97438 * 7 5 3 9 9 Si 1.86795 * 120.00089 * 179.97438 * 7 5 3 10 10 H 1.48504 * 109.47403 * 359.97438 * 9 7 5 11 11 H 1.48509 * 109.47370 * 119.99476 * 9 7 5 12 12 H 1.48503 * 109.47431 * 239.99430 * 9 7 5 13 13 N 1.46902 * 109.46980 * 63.11867 * 3 2 1 14 14 C 1.44058 * 111.00208 * 63.72838 * 13 3 2 15 15 C 1.54009 * 108.26512 * 219.68893 * 14 13 3 16 16 C 1.46286 * 112.03439 * 280.48430 * 15 14 13 17 17 O 1.44548 * 111.33315 * 59.66342 * 16 15 14 18 18 C 1.39990 * 112.90051 * 280.44485 * 17 16 15 19 19 H 1.09001 * 108.74079 * 333.50878 * 18 17 16 20 20 C 1.52995 * 108.74030 * 215.41164 * 18 17 16 21 21 C 1.48528 * 110.99594 * 191.85241 * 13 3 2 22 22 H 1.09000 * 109.46795 * 54.76320 * 1 2 3 23 23 H 1.08997 * 109.46902 * 174.75906 * 1 2 3 24 24 H 1.08994 * 109.47309 * 294.76161 * 1 2 3 25 25 H 1.08997 * 109.47060 * 240.00257 * 2 1 3 26 26 H 1.08999 * 109.46966 * 120.00082 * 2 1 3 27 27 H 0.97000 * 120.00227 * 180.02562 * 8 7 5 28 28 H 1.09007 * 109.70474 * 99.99895 * 14 13 3 29 29 H 1.08998 * 109.70615 * 339.38403 * 14 13 3 30 30 H 1.09005 * 108.96533 * 159.83116 * 15 14 13 31 31 H 1.08992 * 108.90005 * 41.10264 * 15 14 13 32 32 H 1.09001 * 109.10501 * 180.13691 * 16 15 14 33 33 H 1.08991 * 109.11033 * 299.18400 * 16 15 14 34 34 H 1.08996 * 109.47655 * 296.36438 * 20 18 17 35 35 H 1.08998 * 109.47511 * 56.37098 * 20 18 17 36 36 H 1.09006 * 109.47209 * 176.36385 * 20 18 17 37 37 H 1.08998 * 108.98771 * 313.10380 * 21 13 3 38 38 H 1.08994 * 108.99156 * 71.83986 * 21 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6318 1.9723 -0.8607 5 6 3.5450 1.4432 -0.0772 6 1 4.1260 1.8963 0.7124 7 6 4.1802 0.8654 -1.1559 8 7 3.4727 0.3133 -2.1173 9 14 6.0457 0.8668 -1.2520 10 1 6.6026 1.5459 -0.0545 11 1 6.5399 -0.5327 -1.3026 12 1 6.4779 1.5889 -2.4756 13 7 1.6128 2.1129 1.2354 14 6 2.2051 1.4908 2.3918 15 6 1.1455 1.4395 3.5083 16 6 1.0072 2.7248 4.1930 17 8 0.6181 3.7708 3.2743 18 6 1.6921 4.2639 2.5239 19 1 2.6120 4.1148 3.0892 20 6 1.4910 5.7648 2.3055 21 6 1.8378 3.5786 1.1507 22 1 -0.3633 0.5929 -0.8394 23 1 -0.3633 -1.0234 -0.0939 24 1 -0.3633 0.4304 0.9331 25 1 1.8934 -0.5138 -0.8900 26 1 1.8934 -0.5138 0.8900 27 1 3.9196 -0.0935 -2.8760 28 1 3.0624 2.0757 2.7253 29 1 2.5247 0.4791 2.1417 30 1 1.4334 0.6800 4.2352 31 1 0.1853 1.1655 3.0714 32 1 0.2501 2.6343 4.9720 33 1 1.9598 2.9890 4.6518 34 1 0.5908 5.9285 1.7131 35 1 1.3866 6.2616 3.2700 36 1 2.3526 6.1738 1.7776 37 1 2.8417 3.7617 0.7677 38 1 1.1125 4.0095 0.4605 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000061918375.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:48:43 Heat of formation + Delta-G solvation = -47.669047 kcal Electronic energy + Delta-G solvation = -17311.267450 eV Core-core repulsion = 14767.631158 eV Total energy + Delta-G solvation = -2543.636292 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.24192 -36.42548 -33.30111 -32.80848 -31.27620 -29.61384 -26.61043 -25.96171 -24.13250 -22.44229 -21.03149 -20.12076 -18.80250 -16.27652 -16.25361 -15.81766 -15.16851 -14.59672 -14.00309 -13.53608 -13.00446 -12.69744 -12.61893 -12.44427 -12.21463 -11.98231 -11.65545 -11.48595 -11.18807 -10.92729 -10.75150 -10.63747 -10.37056 -10.30743 -10.10222 -9.76332 -9.65878 -9.37341 -9.12113 -8.88021 -8.36742 -6.99300 -5.98335 -4.12666 3.23870 3.32811 3.35470 4.17328 4.38179 4.93406 5.23875 5.34495 5.36582 5.50484 5.63065 5.68580 5.77012 5.94654 6.07448 6.13801 6.27374 6.28855 6.37435 6.38781 6.49937 6.57447 6.68901 6.72302 6.76934 6.92361 7.17395 7.22417 7.41852 7.62711 7.74102 7.79458 8.04452 8.20307 8.38137 8.59576 8.99028 9.55078 10.99862 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.026526 B = 0.009594 C = 0.008328 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1055.310655 B = 2917.692956 C = 3361.459241 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.110 4.110 3 C 0.216 3.784 4 H 0.036 0.964 5 C -0.542 4.542 6 H 0.053 0.947 7 C 0.068 3.932 8 N -0.884 5.884 9 Si 0.886 3.114 10 H -0.275 1.275 11 H -0.284 1.284 12 H -0.284 1.284 13 N -0.540 5.540 14 C 0.075 3.925 15 C -0.155 4.155 16 C 0.070 3.930 17 O -0.365 6.365 18 C 0.087 3.913 19 H 0.044 0.956 20 C -0.148 4.148 21 C 0.047 3.953 22 H 0.038 0.962 23 H 0.024 0.976 24 H 0.047 0.953 25 H 0.091 0.909 26 H 0.033 0.967 27 H 0.260 0.740 28 H 0.021 0.979 29 H 0.080 0.920 30 H 0.060 0.940 31 H 0.077 0.923 32 H 0.078 0.922 33 H 0.040 0.960 34 H 0.062 0.938 35 H 0.055 0.945 36 H 0.064 0.936 37 H 0.048 0.952 38 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.121 4.338 8.868 10.353 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.148 4.148 3 C 0.110 3.890 4 H 0.054 0.946 5 C -0.581 4.581 6 H 0.071 0.929 7 C -0.135 4.135 8 N -0.523 5.523 9 Si 0.714 3.286 10 H -0.200 1.200 11 H -0.210 1.210 12 H -0.210 1.210 13 N -0.264 5.264 14 C -0.054 4.054 15 C -0.194 4.194 16 C -0.006 4.006 17 O -0.284 6.284 18 C 0.028 3.972 19 H 0.062 0.938 20 C -0.206 4.206 21 C -0.081 4.081 22 H 0.058 0.942 23 H 0.043 0.957 24 H 0.066 0.934 25 H 0.109 0.891 26 H 0.052 0.948 27 H 0.070 0.930 28 H 0.040 0.960 29 H 0.098 0.902 30 H 0.079 0.921 31 H 0.096 0.904 32 H 0.096 0.904 33 H 0.058 0.942 34 H 0.081 0.919 35 H 0.074 0.926 36 H 0.083 0.917 37 H 0.066 0.934 38 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -3.768 4.256 8.718 10.407 hybrid contribution 2.283 -0.083 -0.242 2.298 sum -1.484 4.174 8.476 9.564 Atomic orbital electron populations 1.21694 0.98787 0.98214 1.00659 1.21630 0.92306 0.99099 1.01804 1.19307 0.92479 0.90921 0.86275 0.94603 1.21810 0.92758 1.37458 1.06070 0.92860 1.24917 0.97842 0.95108 0.95595 1.69885 1.34798 1.37820 1.09757 0.86645 0.86347 0.77722 0.77897 1.20024 1.20991 1.21030 1.61015 1.60158 1.01140 1.04127 1.21507 0.92981 1.00355 0.90587 1.21323 1.02400 0.96994 0.98656 1.21533 0.99197 0.88530 0.91304 1.87727 1.33778 1.53062 1.53799 1.21876 0.89342 0.93218 0.92764 0.93760 1.21908 1.02417 0.94530 1.01765 1.22920 1.00291 0.89430 0.95450 0.94247 0.95732 0.93415 0.89053 0.94842 0.92952 0.96030 0.90178 0.92134 0.90428 0.90386 0.94208 0.91895 0.92609 0.91659 0.93418 0.91858 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.82 9.72 37.16 0.36 -2.46 16 2 C -0.11 -2.61 5.09 -26.73 -0.14 -2.75 16 3 C 0.22 5.33 1.70 -68.86 -0.12 5.21 16 4 H 0.04 0.99 8.06 -51.93 -0.42 0.57 16 5 C -0.54 -14.37 6.88 -34.44 -0.24 -14.60 16 6 H 0.05 1.43 6.94 -52.49 -0.36 1.07 16 7 C 0.07 1.83 5.30 -17.82 -0.09 1.74 16 8 N -0.88 -24.74 11.30 55.43 0.63 -24.11 16 9 Si 0.89 21.00 29.54 -169.99 -5.02 15.98 16 10 H -0.28 -6.50 7.11 56.52 0.40 -6.09 16 11 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 12 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 13 N -0.54 -11.55 3.56 -227.55 -0.81 -12.36 16 14 C 0.08 1.48 3.99 -4.81 -0.02 1.46 16 15 C -0.16 -2.52 5.65 -29.40 -0.17 -2.69 16 16 C 0.07 1.05 6.21 33.97 0.21 1.26 16 17 O -0.37 -6.32 10.10 -32.90 -0.33 -6.65 16 18 C 0.09 1.46 2.58 -26.12 -0.07 1.39 16 19 H 0.04 0.73 6.57 -51.93 -0.34 0.39 16 20 C -0.15 -2.05 9.39 37.16 0.35 -1.70 16 21 C 0.05 0.94 5.12 -2.31 -0.01 0.93 16 22 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 23 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 24 H 0.05 0.96 7.57 -51.93 -0.39 0.56 16 25 H 0.09 2.42 5.99 -51.93 -0.31 2.11 16 26 H 0.03 0.78 6.15 -51.93 -0.32 0.46 16 27 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 28 H 0.02 0.43 6.71 -51.93 -0.35 0.08 16 29 H 0.08 1.71 5.41 -51.93 -0.28 1.43 16 30 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 31 H 0.08 1.36 7.83 -51.93 -0.41 0.95 16 32 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 33 H 0.04 0.55 7.47 -51.93 -0.39 0.16 16 34 H 0.06 0.87 8.11 -51.93 -0.42 0.45 16 35 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 37 H 0.05 1.02 7.07 -51.93 -0.37 0.65 16 38 H 0.06 1.26 7.96 -51.93 -0.41 0.85 16 LS Contribution 286.45 15.07 4.32 4.32 Total: -1.00 -27.74 286.45 -7.59 -35.33 By element: Atomic # 1 Polarization: 6.16 SS G_CDS: -6.44 Total: -0.29 kcal Atomic # 6 Polarization: -12.28 SS G_CDS: 0.07 Total: -12.21 kcal Atomic # 7 Polarization: -36.29 SS G_CDS: -0.18 Total: -36.47 kcal Atomic # 8 Polarization: -6.32 SS G_CDS: -0.33 Total: -6.65 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.98 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -27.74 -7.59 -35.33 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000061918375.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.340 kcal (2) G-P(sol) polarization free energy of solvation -27.736 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.076 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.593 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.329 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.669 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds