Wall clock time and date at job start Sun Mar 29 2020 21:48:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53003 * 109.46885 * 2 1 4 4 H 1.09000 * 109.47310 * 303.11434 * 3 2 1 5 5 C 1.50701 * 109.46638 * 183.11578 * 3 2 1 6 6 H 1.08001 * 119.99640 * 239.99890 * 5 3 2 7 7 C 1.37872 * 120.00103 * 60.00665 * 5 3 2 8 8 N 1.31512 * 120.00119 * 359.97438 * 7 5 3 9 9 Si 1.86795 * 120.00089 * 179.97438 * 7 5 3 10 10 H 1.48504 * 109.47403 * 359.97438 * 9 7 5 11 11 H 1.48509 * 109.47370 * 119.99476 * 9 7 5 12 12 H 1.48503 * 109.47431 * 239.99430 * 9 7 5 13 13 N 1.46902 * 109.46980 * 63.11867 * 3 2 1 14 14 C 1.44058 * 111.00208 * 63.72838 * 13 3 2 15 15 C 1.54009 * 108.26512 * 219.68893 * 14 13 3 16 16 C 1.46286 * 112.03439 * 280.48430 * 15 14 13 17 17 O 1.44548 * 111.33315 * 59.66342 * 16 15 14 18 18 C 1.39990 * 112.90051 * 280.44485 * 17 16 15 19 19 H 1.09001 * 108.74079 * 333.50878 * 18 17 16 20 20 C 1.52995 * 108.74030 * 215.41164 * 18 17 16 21 21 C 1.48528 * 110.99594 * 191.85241 * 13 3 2 22 22 H 1.09000 * 109.46795 * 54.76320 * 1 2 3 23 23 H 1.08997 * 109.46902 * 174.75906 * 1 2 3 24 24 H 1.08994 * 109.47309 * 294.76161 * 1 2 3 25 25 H 1.08997 * 109.47060 * 240.00257 * 2 1 3 26 26 H 1.08999 * 109.46966 * 120.00082 * 2 1 3 27 27 H 0.97000 * 120.00227 * 180.02562 * 8 7 5 28 28 H 1.09007 * 109.70474 * 99.99895 * 14 13 3 29 29 H 1.08998 * 109.70615 * 339.38403 * 14 13 3 30 30 H 1.09005 * 108.96533 * 159.83116 * 15 14 13 31 31 H 1.08992 * 108.90005 * 41.10264 * 15 14 13 32 32 H 1.09001 * 109.10501 * 180.13691 * 16 15 14 33 33 H 1.08991 * 109.11033 * 299.18400 * 16 15 14 34 34 H 1.08996 * 109.47655 * 296.36438 * 20 18 17 35 35 H 1.08998 * 109.47511 * 56.37098 * 20 18 17 36 36 H 1.09006 * 109.47209 * 176.36385 * 20 18 17 37 37 H 1.08998 * 108.98771 * 313.10380 * 21 13 3 38 38 H 1.08994 * 108.99156 * 71.83986 * 21 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6318 1.9723 -0.8607 5 6 3.5450 1.4432 -0.0772 6 1 4.1260 1.8963 0.7124 7 6 4.1802 0.8654 -1.1559 8 7 3.4727 0.3133 -2.1173 9 14 6.0457 0.8668 -1.2520 10 1 6.6026 1.5459 -0.0545 11 1 6.5399 -0.5327 -1.3026 12 1 6.4779 1.5889 -2.4756 13 7 1.6128 2.1129 1.2354 14 6 2.2051 1.4908 2.3918 15 6 1.1455 1.4395 3.5083 16 6 1.0072 2.7248 4.1930 17 8 0.6181 3.7708 3.2743 18 6 1.6921 4.2639 2.5239 19 1 2.6120 4.1148 3.0892 20 6 1.4910 5.7648 2.3055 21 6 1.8378 3.5786 1.1507 22 1 -0.3633 0.5929 -0.8394 23 1 -0.3633 -1.0234 -0.0939 24 1 -0.3633 0.4304 0.9331 25 1 1.8934 -0.5138 -0.8900 26 1 1.8934 -0.5138 0.8900 27 1 3.9196 -0.0935 -2.8760 28 1 3.0624 2.0757 2.7253 29 1 2.5247 0.4791 2.1417 30 1 1.4334 0.6800 4.2352 31 1 0.1853 1.1655 3.0714 32 1 0.2501 2.6343 4.9720 33 1 1.9598 2.9890 4.6518 34 1 0.5908 5.9285 1.7131 35 1 1.3866 6.2616 3.2700 36 1 2.3526 6.1738 1.7776 37 1 2.8417 3.7617 0.7677 38 1 1.1125 4.0095 0.4605 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000061918375.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:48:43 Heat of formation + Delta-G solvation = -64.537994 kcal Electronic energy + Delta-G solvation = -17311.998942 eV Core-core repulsion = 14767.631158 eV Total energy + Delta-G solvation = -2544.367784 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.68760 -38.09545 -34.81599 -34.49077 -33.13932 -31.03442 -28.47654 -27.43726 -25.80667 -24.15804 -22.39903 -21.66732 -20.63804 -18.27848 -17.60872 -17.41414 -16.69241 -16.31292 -15.57227 -15.20448 -14.75563 -14.25607 -13.98853 -13.90710 -13.75810 -13.41692 -13.21592 -13.14035 -12.80059 -12.77084 -12.55321 -12.24604 -12.15724 -11.77170 -11.56540 -11.47221 -11.39943 -11.09882 -10.99877 -10.45096 -10.33191 -8.80919 -8.02245 -6.27158 1.34222 1.37290 1.46561 2.38250 2.94227 3.13693 3.37571 4.01844 4.09677 4.16150 4.27501 4.39781 4.47497 4.59935 4.69190 4.74015 4.81491 4.85144 4.90020 4.93787 4.98064 5.04949 5.15332 5.16829 5.28480 5.33642 5.43265 5.48171 5.53886 5.61817 5.80754 6.08109 6.22792 6.39625 6.48706 6.83000 6.97124 7.44164 8.91006 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.026526 B = 0.009594 C = 0.008328 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1055.310655 B = 2917.692956 C = 3361.459241 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.104 4.104 3 C 0.223 3.777 4 H -0.003 1.003 5 C -0.549 4.549 6 H 0.046 0.954 7 C 0.021 3.979 8 N -0.910 5.910 9 Si 0.947 3.053 10 H -0.272 1.272 11 H -0.279 1.279 12 H -0.282 1.282 13 N -0.540 5.540 14 C 0.075 3.925 15 C -0.145 4.145 16 C 0.064 3.936 17 O -0.378 6.378 18 C 0.093 3.907 19 H 0.048 0.952 20 C -0.143 4.143 21 C 0.046 3.954 22 H 0.029 0.971 23 H 0.045 0.955 24 H 0.055 0.945 25 H 0.062 0.938 26 H 0.035 0.965 27 H 0.261 0.739 28 H 0.016 0.984 29 H 0.059 0.941 30 H 0.088 0.912 31 H 0.065 0.935 32 H 0.109 0.891 33 H 0.054 0.946 34 H 0.060 0.940 35 H 0.075 0.925 36 H 0.073 0.927 37 H 0.025 0.975 38 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.122 4.733 10.765 12.167 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.142 4.142 3 C 0.116 3.884 4 H 0.015 0.985 5 C -0.588 4.588 6 H 0.064 0.936 7 C -0.179 4.179 8 N -0.550 5.550 9 Si 0.773 3.227 10 H -0.197 1.197 11 H -0.205 1.205 12 H -0.208 1.208 13 N -0.264 5.264 14 C -0.054 4.054 15 C -0.183 4.183 16 C -0.011 4.011 17 O -0.297 6.297 18 C 0.034 3.966 19 H 0.066 0.934 20 C -0.200 4.200 21 C -0.083 4.083 22 H 0.048 0.952 23 H 0.064 0.936 24 H 0.074 0.926 25 H 0.080 0.920 26 H 0.053 0.947 27 H 0.071 0.929 28 H 0.035 0.965 29 H 0.078 0.922 30 H 0.107 0.893 31 H 0.084 0.916 32 H 0.127 0.873 33 H 0.072 0.928 34 H 0.079 0.921 35 H 0.094 0.906 36 H 0.092 0.908 37 H 0.044 0.956 38 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -3.774 4.656 10.634 12.207 hybrid contribution 2.272 -0.215 -0.828 2.428 sum -1.502 4.441 9.806 10.869 Atomic orbital electron populations 1.21548 0.96395 0.99481 1.00638 1.21461 0.94381 0.98041 1.00338 1.19074 0.91435 0.91329 0.86608 0.98525 1.21996 0.93847 1.37103 1.05850 0.93605 1.25625 1.01943 0.94954 0.95394 1.70011 1.36330 1.38432 1.10187 0.85684 0.81412 0.77765 0.77815 1.19672 1.20507 1.20781 1.61033 1.60038 1.01927 1.03359 1.21553 0.94172 0.98731 0.90968 1.21234 1.00239 0.98955 0.97852 1.21749 1.01103 0.87012 0.91282 1.87725 1.34196 1.53705 1.54080 1.21808 0.89646 0.94482 0.90685 0.93369 1.21879 1.02739 0.92440 1.02988 1.22997 0.98664 0.88762 0.97831 0.95162 0.93599 0.92609 0.91996 0.94674 0.92915 0.96539 0.92228 0.89325 0.91593 0.87348 0.92779 0.92132 0.90608 0.90775 0.95636 0.92709 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.07 9.72 71.98 0.70 -4.38 16 2 C -0.10 -5.01 5.09 30.60 0.16 -4.86 16 3 C 0.22 11.31 1.70 44.17 0.08 11.38 16 4 H 0.00 -0.19 8.06 -2.39 -0.02 -0.21 16 5 C -0.55 -29.79 6.88 25.60 0.18 -29.62 16 6 H 0.05 2.50 6.94 -2.91 -0.02 2.48 16 7 C 0.02 1.14 5.30 84.65 0.45 1.59 16 8 N -0.91 -52.15 11.30 21.45 0.24 -51.91 16 9 Si 0.95 43.53 29.54 68.60 2.03 45.56 16 10 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 11 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 12 H -0.28 -12.79 7.11 99.48 0.71 -12.09 16 13 N -0.54 -23.27 3.56 -873.83 -3.11 -26.38 16 14 C 0.07 2.90 3.99 87.17 0.35 3.24 16 15 C -0.14 -4.33 5.65 28.87 0.16 -4.17 16 16 C 0.06 1.70 6.21 69.91 0.43 2.13 16 17 O -0.38 -12.17 10.10 -140.64 -1.42 -13.59 16 18 C 0.09 2.98 2.58 30.99 0.08 3.06 16 19 H 0.05 1.51 6.57 -2.39 -0.02 1.49 16 20 C -0.14 -3.66 9.39 71.98 0.68 -2.98 16 21 C 0.05 1.83 5.12 86.38 0.44 2.27 16 22 H 0.03 1.26 8.14 -2.39 -0.02 1.25 16 23 H 0.04 1.67 8.14 -2.39 -0.02 1.65 16 24 H 0.05 2.19 7.57 -2.39 -0.02 2.17 16 25 H 0.06 3.37 5.99 -2.39 -0.01 3.35 16 26 H 0.03 1.65 6.15 -2.39 -0.01 1.63 16 27 H 0.26 14.25 8.31 -92.71 -0.77 13.48 16 28 H 0.02 0.64 6.71 -2.38 -0.02 0.63 16 29 H 0.06 2.54 5.41 -2.39 -0.01 2.53 16 30 H 0.09 2.18 8.14 -2.38 -0.02 2.16 16 31 H 0.07 2.16 7.83 -2.39 -0.02 2.14 16 32 H 0.11 2.27 8.14 -2.39 -0.02 2.25 16 33 H 0.05 1.30 7.47 -2.39 -0.02 1.29 16 34 H 0.06 1.57 8.11 -2.39 -0.02 1.55 16 35 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 36 H 0.07 1.75 8.14 -2.38 -0.02 1.73 16 37 H 0.03 1.12 7.07 -2.39 -0.02 1.10 16 38 H 0.05 2.24 7.96 -2.39 -0.02 2.22 16 Total: -1.00 -60.09 286.45 2.45 -57.64 By element: Atomic # 1 Polarization: 10.00 SS G_CDS: 1.01 Total: 11.02 kcal Atomic # 6 Polarization: -26.03 SS G_CDS: 3.70 Total: -22.33 kcal Atomic # 7 Polarization: -75.42 SS G_CDS: -2.87 Total: -78.29 kcal Atomic # 8 Polarization: -12.17 SS G_CDS: -1.42 Total: -13.59 kcal Atomic # 14 Polarization: 43.53 SS G_CDS: 2.03 Total: 45.56 kcal Total: -60.09 2.45 -57.64 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000061918375.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.897 kcal (2) G-P(sol) polarization free energy of solvation -60.088 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.985 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.447 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.641 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.538 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds