Wall clock time and date at job start Sun Mar 29 2020 21:52:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53000 * 109.46819 * 2 1 4 4 H 1.08997 * 109.47161 * 54.97769 * 3 2 1 5 5 C 1.50697 * 109.46998 * 174.98052 * 3 2 1 6 6 H 1.07997 * 120.00692 * 119.99876 * 5 3 2 7 7 C 1.37883 * 119.99785 * 299.99721 * 5 3 2 8 8 N 1.31518 * 119.99908 * 0.02562 * 7 5 3 9 9 Si 1.86801 * 120.00043 * 179.97438 * 7 5 3 10 10 H 1.48503 * 109.46886 * 0.02562 * 9 7 5 11 11 H 1.48500 * 109.46732 * 119.99922 * 9 7 5 12 12 H 1.48494 * 109.47195 * 240.00114 * 9 7 5 13 13 N 1.46906 * 109.47166 * 294.97765 * 3 2 1 14 14 C 1.46894 * 110.99893 * 155.88839 * 13 3 2 15 15 H 1.08999 * 109.54518 * 34.82920 * 14 13 3 16 16 C 1.53186 * 109.54044 * 274.65410 * 14 13 3 17 17 C 1.53089 * 109.16115 * 183.15476 * 16 14 13 18 18 O 1.42903 * 109.41673 * 57.60837 * 17 16 14 19 19 C 1.42905 * 114.10006 * 298.84391 * 18 17 16 20 20 H 1.09002 * 109.47775 * 301.17420 * 19 18 17 21 21 C 1.52998 * 109.48045 * 181.13975 * 19 18 17 22 22 C 1.53094 * 109.41423 * 61.15257 * 19 18 17 23 23 H 1.09000 * 109.47437 * 55.56902 * 1 2 3 24 24 H 1.09002 * 109.47187 * 175.56632 * 1 2 3 25 25 H 1.08999 * 109.47271 * 295.56796 * 1 2 3 26 26 H 1.09002 * 109.46803 * 240.00209 * 2 1 3 27 27 H 1.08999 * 109.46922 * 119.99841 * 2 1 3 28 28 H 0.97000 * 119.99842 * 180.02562 * 8 7 5 29 29 H 1.00905 * 110.99561 * 279.84090 * 13 3 2 30 30 H 1.08995 * 109.51972 * 303.06092 * 16 14 13 31 31 H 1.08995 * 109.52210 * 63.24856 * 16 14 13 32 32 H 1.08995 * 109.47972 * 177.59354 * 17 16 14 33 33 H 1.09001 * 109.48092 * 297.63006 * 17 16 14 34 34 H 1.08997 * 109.46899 * 60.00040 * 21 19 18 35 35 H 1.09003 * 109.46847 * 179.97438 * 21 19 18 36 36 H 1.08999 * 109.47079 * 299.99578 * 21 19 18 37 37 H 1.09000 * 109.51820 * 182.48749 * 22 19 18 38 38 H 1.09001 * 109.51482 * 62.30063 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6050 1.9816 0.8416 5 6 3.5418 1.4444 0.1243 6 1 4.1474 1.8888 -0.6516 7 6 4.1428 0.8786 1.2288 8 7 3.4054 0.3370 2.1735 9 14 6.0045 0.8803 1.3826 10 1 6.5986 1.5453 0.1952 11 1 6.3989 1.6162 2.6107 12 1 6.4956 -0.5187 1.4645 13 7 1.6518 2.0991 -1.2555 14 6 1.5933 3.5576 -1.0906 15 1 2.3693 3.8774 -0.3951 16 6 0.2191 3.9568 -0.5438 17 6 0.1396 5.4827 -0.4497 18 8 0.3783 6.0512 -1.7389 19 6 1.6665 5.7509 -2.2797 20 1 2.4390 6.1150 -1.6024 21 6 1.8194 6.4313 -3.6415 22 6 1.8073 4.2356 -2.4473 23 1 -0.3634 0.5810 -0.8476 24 1 -0.3634 -1.0246 -0.0794 25 1 -0.3634 0.4435 0.9270 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 3.8282 -0.0607 2.9507 29 1 2.2775 1.8448 -2.0051 30 1 -0.5594 3.5921 -1.2138 31 1 0.0812 3.5230 0.4466 32 1 -0.8512 5.7742 -0.1016 33 1 0.8922 5.8433 0.2515 34 1 1.7181 7.5100 -3.5220 35 1 2.8022 6.2025 -4.0536 36 1 1.0471 6.0666 -4.3187 37 1 2.8052 4.0015 -2.8182 38 1 1.0608 3.8767 -3.1558 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000069891019.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:52:58 Heat of formation + Delta-G solvation = -87.284993 kcal Electronic energy + Delta-G solvation = -16756.097166 eV Core-core repulsion = 14210.742998 eV Total energy + Delta-G solvation = -2545.354168 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.51751 -37.92106 -35.08446 -33.71853 -33.37512 -31.22720 -28.73726 -27.60287 -24.88196 -24.40672 -22.62812 -21.28243 -20.99443 -18.66567 -17.21181 -16.94232 -16.75837 -16.06147 -15.88381 -15.43082 -14.94885 -14.69354 -14.28676 -13.64880 -13.39562 -13.26353 -13.15574 -13.08350 -13.00679 -12.71768 -12.62263 -12.36588 -12.08247 -11.97580 -11.58601 -11.57463 -11.39409 -11.21922 -10.92009 -10.47437 -10.42739 -9.07839 -8.07382 -6.29818 1.34622 1.37547 1.47146 2.37715 2.85677 3.12017 3.51569 3.83806 4.02670 4.05334 4.26783 4.34201 4.50879 4.56401 4.61612 4.64940 4.76293 4.78312 4.85867 4.93256 4.94309 5.06172 5.10126 5.18156 5.23830 5.32880 5.39455 5.41677 5.52796 5.63850 5.77459 6.10029 6.19806 6.30375 6.39021 6.82035 7.01058 7.41908 8.89122 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.025563 B = 0.008100 C = 0.006895 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1095.050411 B = 3455.847917 C = 4059.766982 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.103 4.103 3 C 0.224 3.776 4 H 0.000 1.000 5 C -0.558 4.558 6 H 0.049 0.951 7 C 0.019 3.981 8 N -0.911 5.911 9 Si 0.949 3.051 10 H -0.270 1.270 11 H -0.282 1.282 12 H -0.279 1.279 13 N -0.675 5.675 14 C 0.089 3.911 15 H 0.015 0.985 16 C -0.133 4.133 17 C 0.067 3.933 18 O -0.391 6.391 19 C 0.084 3.916 20 H 0.051 0.949 21 C -0.137 4.137 22 C -0.138 4.138 23 H 0.058 0.942 24 H 0.045 0.955 25 H 0.029 0.971 26 H 0.027 0.973 27 H 0.060 0.940 28 H 0.262 0.738 29 H 0.329 0.671 30 H 0.071 0.929 31 H 0.052 0.948 32 H 0.113 0.887 33 H 0.045 0.955 34 H 0.068 0.932 35 H 0.084 0.916 36 H 0.064 0.936 37 H 0.072 0.928 38 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.805 8.739 -7.727 12.270 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.142 4.142 3 C 0.115 3.885 4 H 0.018 0.982 5 C -0.598 4.598 6 H 0.067 0.933 7 C -0.181 4.181 8 N -0.550 5.550 9 Si 0.775 3.225 10 H -0.194 1.194 11 H -0.208 1.208 12 H -0.205 1.205 13 N -0.304 5.304 14 C -0.021 4.021 15 H 0.033 0.967 16 C -0.172 4.172 17 C -0.010 4.010 18 O -0.311 6.311 19 C 0.026 3.974 20 H 0.069 0.931 21 C -0.194 4.194 22 C -0.176 4.176 23 H 0.077 0.923 24 H 0.064 0.936 25 H 0.048 0.952 26 H 0.046 0.954 27 H 0.078 0.922 28 H 0.071 0.929 29 H 0.146 0.854 30 H 0.090 0.910 31 H 0.071 0.929 32 H 0.131 0.869 33 H 0.063 0.937 34 H 0.087 0.913 35 H 0.102 0.898 36 H 0.084 0.916 37 H 0.090 0.910 38 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -4.607 8.664 -7.550 12.381 hybrid contribution 2.254 -0.370 0.880 2.448 sum -2.353 8.294 -6.670 10.900 Atomic orbital electron populations 1.21567 0.96430 0.99903 1.00368 1.21365 0.94418 0.98471 0.99953 1.18912 0.91403 0.91415 0.86754 0.98213 1.22209 0.94156 1.37901 1.05497 0.93311 1.25671 1.02073 0.94806 0.95529 1.70015 1.36320 1.38865 1.09819 0.85647 0.81118 0.77812 0.77893 1.19416 1.20826 1.20482 1.60882 1.55465 1.06085 1.07988 1.21393 0.95703 0.89001 0.96032 0.96651 1.22107 0.97615 0.96390 1.01084 1.22607 1.02333 0.91601 0.84481 1.87852 1.35031 1.74068 1.34105 1.22193 0.84969 0.93532 0.96680 0.93096 1.21740 1.03067 1.00895 0.93657 1.22324 1.02600 0.95874 0.96842 0.92293 0.93625 0.95185 0.95377 0.92175 0.92891 0.85416 0.90994 0.92905 0.86894 0.93681 0.91267 0.89769 0.91644 0.90984 0.90422 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.11 9.85 71.98 0.71 -4.40 16 2 C -0.10 -5.00 5.45 30.60 0.17 -4.84 16 3 C 0.22 11.16 1.80 44.17 0.08 11.24 16 4 H 0.00 0.00 7.18 -2.39 -0.02 -0.02 16 5 C -0.56 -30.25 8.22 25.60 0.21 -30.04 16 6 H 0.05 2.62 7.75 -2.91 -0.02 2.59 16 7 C 0.02 1.05 5.29 84.66 0.45 1.50 16 8 N -0.91 -52.19 11.29 21.45 0.24 -51.95 16 9 Si 0.95 43.34 29.54 68.60 2.03 45.37 16 10 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 11 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 12 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 13 N -0.68 -28.04 5.43 -472.70 -2.57 -30.61 16 14 C 0.09 3.32 2.38 45.04 0.11 3.42 16 15 H 0.02 0.67 7.61 -2.39 -0.02 0.65 16 16 C -0.13 -4.51 5.62 30.69 0.17 -4.34 16 17 C 0.07 1.90 6.84 72.01 0.49 2.39 16 18 O -0.39 -11.41 10.41 -148.98 -1.55 -12.96 16 19 C 0.08 2.26 3.26 30.63 0.10 2.36 16 20 H 0.05 1.40 8.14 -2.39 -0.02 1.39 16 21 C -0.14 -2.78 9.56 71.98 0.69 -2.09 16 22 C -0.14 -4.14 4.69 30.68 0.14 -3.99 16 23 H 0.06 2.29 7.64 -2.39 -0.02 2.27 16 24 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 25 H 0.03 1.22 8.14 -2.39 -0.02 1.21 16 26 H 0.03 1.32 8.14 -2.39 -0.02 1.31 16 27 H 0.06 3.28 5.95 -2.39 -0.01 3.27 16 28 H 0.26 14.25 8.31 -92.71 -0.77 13.48 16 29 H 0.33 13.45 8.08 -89.69 -0.72 12.72 16 30 H 0.07 2.40 8.14 -2.39 -0.02 2.38 16 31 H 0.05 1.96 7.49 -2.39 -0.02 1.95 16 32 H 0.11 2.66 8.14 -2.39 -0.02 2.64 16 33 H 0.04 1.29 8.14 -2.39 -0.02 1.27 16 34 H 0.07 1.28 8.14 -2.39 -0.02 1.27 16 35 H 0.08 1.45 8.14 -2.39 -0.02 1.44 16 36 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 37 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 38 H 0.08 2.28 8.14 -2.39 -0.02 2.26 16 Total: -1.00 -58.75 298.67 1.75 -57.00 By element: Atomic # 1 Polarization: 21.65 SS G_CDS: 0.28 Total: 21.93 kcal Atomic # 6 Polarization: -32.10 SS G_CDS: 3.32 Total: -28.78 kcal Atomic # 7 Polarization: -80.23 SS G_CDS: -2.33 Total: -82.56 kcal Atomic # 8 Polarization: -11.41 SS G_CDS: -1.55 Total: -12.96 kcal Atomic # 14 Polarization: 43.34 SS G_CDS: 2.03 Total: 45.37 kcal Total: -58.75 1.75 -57.00 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069891019.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.285 kcal (2) G-P(sol) polarization free energy of solvation -58.752 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.037 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.752 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.000 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.285 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds