Wall clock time and date at job start Sun Mar 29 2020 21:53:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.47391 * 2 1 4 4 H 1.08995 * 109.47185 * 305.64213 * 3 2 1 5 5 C 1.50695 * 109.47237 * 185.63564 * 3 2 1 6 6 H 1.07997 * 120.00480 * 240.00080 * 5 3 2 7 7 C 1.37883 * 119.99923 * 60.00626 * 5 3 2 8 8 N 1.31512 * 119.99603 * 359.97438 * 7 5 3 9 9 Si 1.86801 * 119.99978 * 179.97438 * 7 5 3 10 10 H 1.48493 * 109.47228 * 59.99969 * 9 7 5 11 11 H 1.48504 * 109.46646 * 179.97438 * 9 7 5 12 12 H 1.48494 * 109.47075 * 299.99498 * 9 7 5 13 13 N 1.46905 * 109.46846 * 65.64140 * 3 2 1 14 14 C 1.46895 * 110.99986 * 204.38436 * 13 3 2 15 15 H 1.09002 * 109.54223 * 326.07878 * 14 13 3 16 16 C 1.53179 * 109.54478 * 86.25396 * 14 13 3 17 17 C 1.53096 * 109.16540 * 176.84699 * 16 14 13 18 18 O 1.42904 * 109.41359 * 302.39415 * 17 16 14 19 19 C 1.42906 * 114.09765 * 61.15574 * 18 17 16 20 20 H 1.08997 * 109.47839 * 178.84689 * 19 18 17 21 21 C 1.52994 * 109.47947 * 58.82669 * 19 18 17 22 22 C 1.53086 * 109.41485 * 298.84146 * 19 18 17 23 23 H 1.08996 * 109.47210 * 174.37025 * 1 2 3 24 24 H 1.09005 * 109.46916 * 294.37227 * 1 2 3 25 25 H 1.09001 * 109.47296 * 54.36917 * 1 2 3 26 26 H 1.09005 * 109.46739 * 239.99990 * 2 1 3 27 27 H 1.08997 * 109.47390 * 120.00651 * 2 1 3 28 28 H 0.97007 * 119.99937 * 180.02562 * 8 7 5 29 29 H 1.00905 * 111.00012 * 328.33664 * 13 3 2 30 30 H 1.08996 * 109.52623 * 296.75636 * 16 14 13 31 31 H 1.09007 * 109.52046 * 56.94319 * 16 14 13 32 32 H 1.08998 * 109.47867 * 62.37320 * 17 16 14 33 33 H 1.08994 * 109.48187 * 182.39934 * 17 16 14 34 34 H 1.09005 * 109.47437 * 59.99721 * 21 19 18 35 35 H 1.08998 * 109.47423 * 179.97438 * 21 19 18 36 36 H 1.09005 * 109.47015 * 299.99846 * 21 19 18 37 37 H 1.09002 * 109.52402 * 297.70468 * 22 19 18 38 38 H 1.09005 * 109.52293 * 177.51484 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5966 1.9846 -0.8351 5 6 3.5405 1.4447 -0.1395 6 1 4.1540 1.8864 0.6318 7 6 4.1303 0.8830 -1.2521 8 7 3.3833 0.3448 -2.1912 9 14 5.9902 0.8864 -1.4254 10 1 6.5948 0.1481 -0.2876 11 1 6.3697 0.2266 -2.7006 12 1 6.4848 2.2866 -1.4257 13 7 1.6647 2.0945 1.2618 14 6 1.5984 3.5532 1.1011 15 1 2.3539 3.8758 0.3848 16 6 0.2086 3.9502 0.5938 17 6 0.1232 5.4762 0.5047 18 8 0.3967 6.0430 1.7876 19 6 1.7002 5.7445 2.2915 20 1 1.8354 6.2280 3.2590 21 6 2.7562 6.2597 1.3117 22 6 1.8490 4.2294 2.4525 23 1 -0.3633 -1.0227 -0.1008 24 1 -0.3633 0.4241 0.9361 25 1 -0.3634 0.5987 -0.8353 26 1 1.8933 -0.5139 -0.8900 27 1 1.8934 -0.5139 0.8899 28 1 3.7982 -0.0507 -2.9738 29 1 0.7917 1.7292 1.6118 30 1 0.0438 3.5179 -0.3930 31 1 -0.5501 3.5826 1.2849 32 1 0.8549 5.8396 -0.2168 33 1 -0.8776 5.7661 0.1848 34 1 2.6495 7.3384 1.1964 35 1 3.7505 6.0324 1.6963 36 1 2.6211 5.7758 0.3443 37 1 1.1234 3.8675 3.1810 38 1 2.8574 3.9967 2.7948 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000069891024.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:53:02 Heat of formation + Delta-G solvation = -81.665838 kcal Electronic energy + Delta-G solvation = -16966.467146 eV Core-core repulsion = 14421.356643 eV Total energy + Delta-G solvation = -2545.110503 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.80491 -38.03215 -35.08777 -33.63799 -33.04254 -31.02660 -28.97436 -27.87548 -24.89944 -24.31933 -23.29992 -21.51740 -20.16884 -18.31381 -17.59467 -16.94124 -16.79633 -16.00601 -15.64728 -15.33999 -15.04137 -14.75950 -14.48956 -13.94916 -13.66284 -13.42045 -13.15832 -13.02760 -12.76950 -12.69803 -12.57053 -12.21223 -12.00116 -11.97495 -11.91828 -11.61388 -11.53821 -11.05461 -10.81033 -10.43294 -10.42808 -8.93649 -8.06518 -6.18403 1.40524 1.41853 1.49392 2.43112 2.93890 3.18188 3.57988 3.86125 3.94352 4.06229 4.23108 4.31526 4.46270 4.47830 4.52774 4.56619 4.61775 4.70129 4.76695 4.84751 4.93445 5.01718 5.08790 5.16982 5.21425 5.23311 5.33959 5.35935 5.44820 5.62045 5.76261 5.90524 6.29765 6.37696 6.54410 6.95512 7.02653 7.50605 8.96109 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.024960 B = 0.008979 C = 0.007312 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1121.547452 B = 3117.571296 C = 3828.163448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.122 4.122 3 C 0.229 3.771 4 H -0.030 1.030 5 C -0.511 4.511 6 H 0.048 0.952 7 C 0.010 3.990 8 N -0.919 5.919 9 Si 0.952 3.048 10 H -0.274 1.274 11 H -0.284 1.284 12 H -0.274 1.274 13 N -0.683 5.683 14 C 0.092 3.908 15 H 0.054 0.946 16 C -0.175 4.175 17 C 0.065 3.935 18 O -0.388 6.388 19 C 0.088 3.912 20 H 0.122 0.878 21 C -0.184 4.184 22 C -0.128 4.128 23 H 0.056 0.944 24 H 0.056 0.944 25 H 0.036 0.964 26 H 0.067 0.933 27 H 0.034 0.966 28 H 0.260 0.740 29 H 0.326 0.674 30 H 0.054 0.946 31 H 0.073 0.927 32 H 0.050 0.950 33 H 0.109 0.891 34 H 0.073 0.927 35 H 0.071 0.929 36 H 0.046 0.954 37 H 0.069 0.931 38 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.182 8.490 6.233 11.738 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.161 4.161 3 C 0.120 3.880 4 H -0.012 1.012 5 C -0.549 4.549 6 H 0.066 0.934 7 C -0.188 4.188 8 N -0.559 5.559 9 Si 0.778 3.222 10 H -0.199 1.199 11 H -0.210 1.210 12 H -0.199 1.199 13 N -0.314 5.314 14 C -0.018 4.018 15 H 0.072 0.928 16 C -0.215 4.215 17 C -0.012 4.012 18 O -0.307 6.307 19 C 0.031 3.969 20 H 0.140 0.860 21 C -0.241 4.241 22 C -0.166 4.166 23 H 0.075 0.925 24 H 0.075 0.925 25 H 0.055 0.945 26 H 0.085 0.915 27 H 0.053 0.947 28 H 0.069 0.931 29 H 0.145 0.855 30 H 0.073 0.927 31 H 0.091 0.909 32 H 0.069 0.931 33 H 0.127 0.873 34 H 0.092 0.908 35 H 0.090 0.910 36 H 0.065 0.935 37 H 0.088 0.912 38 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -4.638 8.494 6.402 11.604 hybrid contribution 0.464 -0.492 -1.221 1.396 sum -4.175 8.002 5.181 10.407 Atomic orbital electron populations 1.21735 0.96290 1.01042 1.00426 1.21603 0.94225 0.99211 1.01072 1.18887 0.93787 0.90435 0.84855 1.01241 1.21443 0.92931 1.36542 1.04028 0.93395 1.25661 1.02101 0.95411 0.95649 1.69992 1.36200 1.39886 1.09857 0.85701 0.81029 0.78251 0.77176 1.19937 1.20976 1.19920 1.60683 1.36234 1.03352 1.31085 1.21503 0.94998 0.88623 0.96698 0.92770 1.22843 0.98904 0.98206 1.01530 1.22533 1.02022 0.91252 0.85404 1.87908 1.33529 1.74276 1.34983 1.22302 0.82400 0.93989 0.98237 0.86042 1.22425 0.99813 1.01884 0.99992 1.22115 1.02528 0.95050 0.96905 0.92535 0.92461 0.94486 0.91464 0.94689 0.93117 0.85500 0.92696 0.90856 0.93138 0.87345 0.90839 0.91020 0.93477 0.91233 0.91228 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.17 9.64 71.98 0.69 -4.47 16 2 C -0.12 -5.81 5.37 30.59 0.16 -5.64 16 3 C 0.23 11.42 1.85 44.17 0.08 11.50 16 4 H -0.03 -1.66 7.24 -2.39 -0.02 -1.68 16 5 C -0.51 -28.47 8.47 25.60 0.22 -28.25 16 6 H 0.05 2.72 7.81 -2.91 -0.02 2.70 16 7 C 0.01 0.55 5.29 84.66 0.45 1.00 16 8 N -0.92 -52.96 11.29 21.45 0.24 -52.71 16 9 Si 0.95 44.28 29.54 68.60 2.03 46.30 16 10 H -0.27 -12.51 7.11 99.48 0.71 -11.81 16 11 H -0.28 -12.92 7.11 99.48 0.71 -12.22 16 12 H -0.27 -12.42 7.11 99.48 0.71 -11.72 16 13 N -0.68 -28.61 6.05 -472.71 -2.86 -31.47 16 14 C 0.09 3.40 2.04 45.03 0.09 3.49 16 15 H 0.05 2.33 6.09 -2.39 -0.01 2.32 16 16 C -0.18 -5.59 5.39 30.69 0.17 -5.43 16 17 C 0.07 1.78 6.52 72.01 0.47 2.25 16 18 O -0.39 -10.92 10.60 -148.98 -1.58 -12.50 16 19 C 0.09 2.32 3.91 30.62 0.12 2.44 16 20 H 0.12 2.61 8.14 -2.39 -0.02 2.59 16 21 C -0.18 -4.75 8.65 71.98 0.62 -4.13 16 22 C -0.13 -3.91 5.25 30.68 0.16 -3.75 16 23 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 24 H 0.06 1.89 6.65 -2.38 -0.02 1.87 16 25 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 26 H 0.07 3.63 5.94 -2.38 -0.01 3.62 16 27 H 0.03 1.65 8.14 -2.39 -0.02 1.63 16 28 H 0.26 14.33 8.31 -92.70 -0.77 13.56 16 29 H 0.33 12.41 6.29 -89.69 -0.56 11.84 16 30 H 0.05 1.92 7.56 -2.39 -0.02 1.90 16 31 H 0.07 2.19 8.08 -2.38 -0.02 2.17 16 32 H 0.05 1.41 6.34 -2.39 -0.02 1.39 16 33 H 0.11 2.47 8.14 -2.39 -0.02 2.45 16 34 H 0.07 1.64 8.14 -2.38 -0.02 1.62 16 35 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 36 H 0.05 1.41 4.98 -2.38 -0.01 1.40 16 37 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 38 H 0.07 2.22 8.14 -2.38 -0.02 2.21 16 Total: -1.00 -60.02 289.75 1.53 -58.49 By element: Atomic # 1 Polarization: 22.43 SS G_CDS: 0.46 Total: 22.89 kcal Atomic # 6 Polarization: -34.23 SS G_CDS: 3.23 Total: -31.00 kcal Atomic # 7 Polarization: -81.57 SS G_CDS: -2.62 Total: -84.19 kcal Atomic # 8 Polarization: -10.92 SS G_CDS: -1.58 Total: -12.50 kcal Atomic # 14 Polarization: 44.28 SS G_CDS: 2.03 Total: 46.30 kcal Total: -60.02 1.53 -58.49 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069891024.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.174 kcal (2) G-P(sol) polarization free energy of solvation -60.017 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.191 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.525 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.491 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.666 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds