Wall clock time and date at job start Sun Mar 29 2020 21:56:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52995 * 109.47544 * 2 1 4 4 H 1.09004 * 109.47251 * 305.00437 * 3 2 1 5 5 O 1.42905 * 109.47109 * 64.99826 * 3 2 1 6 6 C 1.52995 * 109.47676 * 185.00211 * 3 2 1 7 7 N 1.46501 * 109.47193 * 179.97438 * 6 3 2 8 8 C 1.36935 * 119.99838 * 93.54184 * 7 6 3 9 9 H 1.07998 * 120.00027 * 214.39040 * 8 7 6 10 10 C 1.38817 * 120.00154 * 34.66658 * 8 7 6 11 11 N 1.31619 * 119.99948 * 215.14261 * 10 8 7 12 12 Si 1.86800 * 119.99969 * 35.13984 * 10 8 7 13 13 H 1.48495 * 109.46933 * 92.62230 * 12 10 8 14 14 H 1.48498 * 109.47068 * 212.61822 * 12 10 8 15 15 H 1.48496 * 109.47041 * 332.61914 * 12 10 8 16 16 C 1.46495 * 120.00319 * 273.53658 * 7 6 3 17 17 C 1.54267 * 110.03372 * 242.42528 * 16 7 6 18 18 C 1.54967 * 104.15787 * 217.13652 * 17 16 7 19 19 C 1.54886 * 102.77863 * 37.88386 * 18 17 16 20 20 C 1.53872 * 110.03483 * 125.20355 * 16 7 6 21 21 H 1.08998 * 109.47318 * 180.02562 * 1 2 3 22 22 H 1.09000 * 109.46455 * 299.99770 * 1 2 3 23 23 H 1.08993 * 109.46966 * 59.99443 * 1 2 3 24 24 H 1.09003 * 109.46965 * 240.00185 * 2 1 3 25 25 H 1.08998 * 109.47436 * 120.00528 * 2 1 3 26 26 H 0.96709 * 113.99535 * 60.00414 * 5 3 2 27 27 H 1.08998 * 109.47032 * 59.99815 * 6 3 2 28 28 H 1.09004 * 109.46965 * 300.00400 * 6 3 2 29 29 H 0.97003 * 120.00061 * 179.97438 * 11 10 8 30 30 H 1.09001 * 110.01402 * 3.81316 * 16 7 6 31 31 H 1.08997 * 110.48702 * 335.77731 * 17 16 7 32 32 H 1.08996 * 110.49015 * 98.42774 * 17 16 7 33 33 H 1.09007 * 110.71781 * 279.57032 * 18 17 16 34 34 H 1.08997 * 110.92623 * 156.29661 * 18 17 16 35 35 H 1.09001 * 110.48706 * 203.40308 * 19 18 17 36 36 H 1.09003 * 110.59624 * 80.81732 * 19 18 17 37 37 H 1.08998 * 110.03672 * 238.57712 * 20 16 7 38 38 H 1.09001 * 110.02836 * 359.95438 * 20 16 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6055 1.9815 -0.8418 5 8 1.6621 2.0814 1.2211 6 6 3.5649 1.4443 -0.1258 7 7 4.0532 2.8255 -0.1264 8 6 4.4475 3.4128 1.0461 9 1 4.2791 4.4677 1.2050 10 6 5.0687 2.6535 2.0282 11 7 4.8476 2.9135 3.2993 12 14 6.2185 1.2626 1.5456 13 1 7.6124 1.7711 1.4852 14 1 6.1313 0.1759 2.5539 15 1 5.8258 0.7352 0.2142 16 6 4.1197 3.5784 -1.3813 17 6 5.5821 3.9578 -1.6930 18 6 5.4822 5.3742 -2.3139 19 6 4.3575 6.0355 -1.4792 20 6 3.3412 4.8987 -1.2458 21 1 -0.3634 -1.0276 0.0005 22 1 -0.3632 0.5138 0.8900 23 1 -0.3633 0.5139 -0.8899 24 1 1.8933 -0.5138 -0.8900 25 1 1.8934 -0.5139 0.8899 26 1 2.0143 1.6541 2.0139 27 1 3.8532 0.9570 -1.0571 28 1 3.9995 0.9052 0.7160 29 1 5.2814 2.3827 3.9856 30 1 3.7067 2.9833 -2.1957 31 1 6.1730 3.9838 -0.7774 32 1 6.0142 3.2570 -2.4073 33 1 5.1995 5.3153 -3.3651 34 1 6.4200 5.9173 -2.1976 35 1 3.8969 6.8504 -2.0377 36 1 4.7485 6.3988 -0.5288 37 1 2.5508 4.9448 -1.9950 38 1 2.9132 4.9789 -0.2466 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000070715005.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:56:33 Heat of formation + Delta-G solvation = -44.808170 kcal Electronic energy + Delta-G solvation = -17176.589875 eV Core-core repulsion = 14633.077640 eV Total energy + Delta-G solvation = -2543.512235 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -38.15291 -36.78438 -33.82785 -32.15991 -31.35168 -28.12187 -27.89143 -26.55754 -23.74284 -21.84803 -20.70633 -19.92825 -18.94292 -16.60929 -15.65694 -15.16537 -14.93937 -14.74916 -14.36000 -13.90893 -13.36769 -13.02081 -12.70048 -12.31486 -12.08423 -11.74798 -11.64231 -11.16286 -10.81196 -10.67538 -10.61289 -10.45472 -10.43748 -10.33006 -10.23636 -9.94784 -9.93138 -9.67972 -9.33147 -9.03667 -8.30397 -6.70014 -5.98797 -3.18783 3.37877 3.51284 3.56808 4.59951 4.85413 5.23948 5.32199 5.34979 5.40420 5.48550 5.51305 5.66996 5.71296 5.98142 6.08230 6.12566 6.20080 6.22378 6.25939 6.27510 6.35594 6.41938 6.47622 6.54621 6.57200 6.57466 6.68883 6.78629 6.95235 6.99760 7.18803 7.24332 8.09964 8.48454 8.67911 9.10756 9.82752 10.25452 11.17029 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.018717 B = 0.012952 C = 0.009387 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1495.605656 B = 2161.360823 C = 2982.170382 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.160 4.160 3 C 0.089 3.911 4 H 0.080 0.920 5 O -0.541 6.541 6 C 0.119 3.881 7 N -0.589 5.589 8 C -0.243 4.243 9 H 0.077 0.923 10 C 0.040 3.960 11 N -0.880 5.880 12 Si 0.832 3.168 13 H -0.294 1.294 14 H -0.298 1.298 15 H -0.265 1.265 16 C 0.173 3.827 17 C -0.138 4.138 18 C -0.122 4.122 19 C -0.118 4.118 20 C -0.132 4.132 21 H 0.043 0.957 22 H 0.060 0.940 23 H 0.048 0.952 24 H 0.060 0.940 25 H 0.060 0.940 26 H 0.371 0.629 27 H 0.037 0.963 28 H 0.057 0.943 29 H 0.259 0.741 30 H 0.048 0.952 31 H 0.081 0.919 32 H 0.045 0.955 33 H 0.053 0.947 34 H 0.054 0.946 35 H 0.048 0.952 36 H 0.064 0.936 37 H 0.043 0.957 38 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.653 -2.151 -8.898 9.856 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.199 4.199 3 C 0.027 3.973 4 H 0.098 0.902 5 O -0.345 6.345 6 C -0.007 4.007 7 N -0.309 5.309 8 C -0.371 4.371 9 H 0.095 0.905 10 C -0.160 4.160 11 N -0.521 5.521 12 Si 0.659 3.341 13 H -0.222 1.222 14 H -0.225 1.225 15 H -0.190 1.190 16 C 0.066 3.934 17 C -0.177 4.177 18 C -0.160 4.160 19 C -0.155 4.155 20 C -0.171 4.171 21 H 0.062 0.938 22 H 0.079 0.921 23 H 0.067 0.933 24 H 0.079 0.921 25 H 0.079 0.921 26 H 0.218 0.782 27 H 0.055 0.945 28 H 0.075 0.925 29 H 0.069 0.931 30 H 0.067 0.933 31 H 0.099 0.901 32 H 0.064 0.936 33 H 0.072 0.928 34 H 0.073 0.927 35 H 0.067 0.933 36 H 0.083 0.917 37 H 0.061 0.939 38 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -3.941 -1.778 -9.117 10.090 hybrid contribution 1.202 -1.336 0.163 1.804 sum -2.739 -3.114 -8.954 9.868 Atomic orbital electron populations 1.21662 0.95914 1.00370 1.02109 1.22298 0.96426 0.99327 1.01800 1.22569 0.96388 0.90111 0.88259 0.90171 1.86498 1.75592 1.57523 1.14936 1.21897 0.92274 0.87367 0.99209 1.44114 1.72622 1.10509 1.03614 1.18486 1.32151 0.96043 0.90437 0.90524 1.25353 0.99006 0.96876 0.94796 1.70119 1.41263 1.41238 0.99448 0.87612 0.84429 0.83256 0.78754 1.22153 1.22517 1.18968 1.21024 0.92732 0.91922 0.87763 1.22874 0.99749 0.94611 1.00454 1.22417 0.98170 0.97128 0.98255 1.22252 0.96511 0.97249 0.99524 1.22538 0.97154 0.95294 1.02151 0.93774 0.92136 0.93255 0.92081 0.92142 0.78233 0.94474 0.92521 0.93090 0.93327 0.90084 0.93639 0.92780 0.92749 0.93339 0.91730 0.93851 0.90040 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.97 9.81 37.16 0.36 -1.60 16 2 C -0.16 -2.45 5.61 -26.73 -0.15 -2.60 16 3 C 0.09 1.65 3.24 -26.74 -0.09 1.57 16 4 H 0.08 1.50 8.14 -51.93 -0.42 1.08 16 5 O -0.54 -11.48 12.32 -35.23 -0.43 -11.92 16 6 C 0.12 2.48 3.62 -4.04 -0.01 2.46 16 7 N -0.59 -13.30 1.98 -164.40 -0.33 -13.63 16 8 C -0.24 -6.39 7.66 -15.06 -0.12 -6.51 16 9 H 0.08 2.23 7.09 -52.49 -0.37 1.86 16 10 C 0.04 1.09 5.01 -17.43 -0.09 1.00 16 11 N -0.88 -25.62 13.97 55.49 0.78 -24.84 16 12 Si 0.83 20.81 26.31 -169.99 -4.47 16.33 16 13 H -0.29 -7.62 7.11 56.52 0.40 -7.22 16 14 H -0.30 -7.57 7.11 56.52 0.40 -7.17 16 15 H -0.26 -6.33 5.82 56.52 0.33 -6.01 16 16 C 0.17 3.40 3.42 -66.82 -0.23 3.18 16 17 C -0.14 -2.59 6.43 -25.03 -0.16 -2.75 16 18 C -0.12 -1.94 6.91 -24.70 -0.17 -2.11 16 19 C -0.12 -1.98 6.83 -25.08 -0.17 -2.15 16 20 C -0.13 -2.48 6.12 -25.62 -0.16 -2.63 16 21 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 22 H 0.06 0.88 7.82 -51.93 -0.41 0.48 16 23 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 24 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 25 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 26 H 0.37 7.74 9.05 45.56 0.41 8.15 16 27 H 0.04 0.72 8.04 -51.93 -0.42 0.30 16 28 H 0.06 1.27 4.32 -51.93 -0.22 1.05 16 29 H 0.26 7.24 8.31 -40.82 -0.34 6.91 16 30 H 0.05 0.89 7.90 -51.93 -0.41 0.48 16 31 H 0.08 1.77 7.22 -51.93 -0.37 1.39 16 32 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 35 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.06 1.18 8.14 -51.93 -0.42 0.75 16 37 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.08 1.78 6.74 -51.93 -0.35 1.43 16 LS Contribution 295.32 15.07 4.45 4.45 Total: -1.00 -28.29 295.32 -6.98 -35.28 By element: Atomic # 1 Polarization: 12.47 SS G_CDS: -6.00 Total: 6.46 kcal Atomic # 6 Polarization: -11.17 SS G_CDS: -0.98 Total: -12.14 kcal Atomic # 7 Polarization: -38.92 SS G_CDS: 0.45 Total: -38.47 kcal Atomic # 8 Polarization: -11.48 SS G_CDS: -0.43 Total: -11.92 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -4.47 Total: 16.33 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -28.29 -6.98 -35.28 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070715005.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.529 kcal (2) G-P(sol) polarization free energy of solvation -28.294 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.823 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.985 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.279 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.808 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds