Wall clock time and date at job start Sun Mar 29 2020 21:56:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52995 * 109.47544 * 2 1 4 4 H 1.09004 * 109.47251 * 305.00437 * 3 2 1 5 5 O 1.42905 * 109.47109 * 64.99826 * 3 2 1 6 6 C 1.52995 * 109.47676 * 185.00211 * 3 2 1 7 7 N 1.46501 * 109.47193 * 179.97438 * 6 3 2 8 8 C 1.36935 * 119.99838 * 93.54184 * 7 6 3 9 9 H 1.07998 * 120.00027 * 214.39040 * 8 7 6 10 10 C 1.38817 * 120.00154 * 34.66658 * 8 7 6 11 11 N 1.31619 * 119.99948 * 215.14261 * 10 8 7 12 12 Si 1.86800 * 119.99969 * 35.13984 * 10 8 7 13 13 H 1.48495 * 109.46933 * 92.62230 * 12 10 8 14 14 H 1.48498 * 109.47068 * 212.61822 * 12 10 8 15 15 H 1.48496 * 109.47041 * 332.61914 * 12 10 8 16 16 C 1.46495 * 120.00319 * 273.53658 * 7 6 3 17 17 C 1.54267 * 110.03372 * 242.42528 * 16 7 6 18 18 C 1.54967 * 104.15787 * 217.13652 * 17 16 7 19 19 C 1.54886 * 102.77863 * 37.88386 * 18 17 16 20 20 C 1.53872 * 110.03483 * 125.20355 * 16 7 6 21 21 H 1.08998 * 109.47318 * 180.02562 * 1 2 3 22 22 H 1.09000 * 109.46455 * 299.99770 * 1 2 3 23 23 H 1.08993 * 109.46966 * 59.99443 * 1 2 3 24 24 H 1.09003 * 109.46965 * 240.00185 * 2 1 3 25 25 H 1.08998 * 109.47436 * 120.00528 * 2 1 3 26 26 H 0.96709 * 113.99535 * 60.00414 * 5 3 2 27 27 H 1.08998 * 109.47032 * 59.99815 * 6 3 2 28 28 H 1.09004 * 109.46965 * 300.00400 * 6 3 2 29 29 H 0.97003 * 120.00061 * 179.97438 * 11 10 8 30 30 H 1.09001 * 110.01402 * 3.81316 * 16 7 6 31 31 H 1.08997 * 110.48702 * 335.77731 * 17 16 7 32 32 H 1.08996 * 110.49015 * 98.42774 * 17 16 7 33 33 H 1.09007 * 110.71781 * 279.57032 * 18 17 16 34 34 H 1.08997 * 110.92623 * 156.29661 * 18 17 16 35 35 H 1.09001 * 110.48706 * 203.40308 * 19 18 17 36 36 H 1.09003 * 110.59624 * 80.81732 * 19 18 17 37 37 H 1.08998 * 110.03672 * 238.57712 * 20 16 7 38 38 H 1.09001 * 110.02836 * 359.95438 * 20 16 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6055 1.9815 -0.8418 5 8 1.6621 2.0814 1.2211 6 6 3.5649 1.4443 -0.1258 7 7 4.0532 2.8255 -0.1264 8 6 4.4475 3.4128 1.0461 9 1 4.2791 4.4677 1.2050 10 6 5.0687 2.6535 2.0282 11 7 4.8476 2.9135 3.2993 12 14 6.2185 1.2626 1.5456 13 1 7.6124 1.7711 1.4852 14 1 6.1313 0.1759 2.5539 15 1 5.8258 0.7352 0.2142 16 6 4.1197 3.5784 -1.3813 17 6 5.5821 3.9578 -1.6930 18 6 5.4822 5.3742 -2.3139 19 6 4.3575 6.0355 -1.4792 20 6 3.3412 4.8987 -1.2458 21 1 -0.3634 -1.0276 0.0005 22 1 -0.3632 0.5138 0.8900 23 1 -0.3633 0.5139 -0.8899 24 1 1.8933 -0.5138 -0.8900 25 1 1.8934 -0.5139 0.8899 26 1 2.0143 1.6541 2.0139 27 1 3.8532 0.9570 -1.0571 28 1 3.9995 0.9052 0.7160 29 1 5.2814 2.3827 3.9856 30 1 3.7067 2.9833 -2.1957 31 1 6.1730 3.9838 -0.7774 32 1 6.0142 3.2570 -2.4073 33 1 5.1995 5.3153 -3.3651 34 1 6.4200 5.9173 -2.1976 35 1 3.8969 6.8504 -2.0377 36 1 4.7485 6.3988 -0.5288 37 1 2.5508 4.9448 -1.9950 38 1 2.9132 4.9789 -0.2466 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000070715005.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:56:33 Heat of formation + Delta-G solvation = -63.022579 kcal Electronic energy + Delta-G solvation = -17177.379711 eV Core-core repulsion = 14633.077640 eV Total energy + Delta-G solvation = -2544.302071 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.75295 -38.28103 -35.58254 -33.64132 -33.22229 -29.60948 -29.35693 -28.28366 -25.39410 -23.45945 -22.13599 -21.31169 -20.65128 -18.46726 -17.31840 -16.84541 -16.52528 -16.36118 -15.90418 -15.45909 -14.89481 -14.58929 -14.35619 -13.97029 -13.82253 -13.10960 -13.01069 -12.76011 -12.66952 -12.35027 -12.13881 -11.93261 -11.83906 -11.78605 -11.74010 -11.65647 -11.34808 -11.28374 -11.13246 -10.65007 -10.35668 -8.57543 -8.11247 -5.26669 1.35016 1.47483 1.52753 2.52067 3.03298 3.42801 3.81489 3.97290 3.98248 4.07753 4.25250 4.30440 4.37287 4.51690 4.67330 4.75663 4.78321 4.85918 4.93784 4.94903 4.97628 5.01948 5.10112 5.11377 5.20069 5.22516 5.32376 5.43480 5.46866 5.53315 5.65973 5.68536 6.06759 6.35381 7.01375 7.17625 7.83420 8.24999 9.09083 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.018717 B = 0.012952 C = 0.009387 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1495.605656 B = 2161.360823 C = 2982.170382 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.153 4.153 3 C 0.092 3.908 4 H 0.083 0.917 5 O -0.562 6.562 6 C 0.113 3.887 7 N -0.598 5.598 8 C -0.215 4.215 9 H 0.035 0.965 10 C -0.009 4.009 11 N -0.928 5.928 12 Si 0.893 3.107 13 H -0.308 1.308 14 H -0.303 1.303 15 H -0.243 1.243 16 C 0.163 3.837 17 C -0.138 4.138 18 C -0.110 4.110 19 C -0.116 4.116 20 C -0.128 4.128 21 H 0.066 0.934 22 H 0.044 0.956 23 H 0.055 0.945 24 H 0.082 0.918 25 H 0.057 0.943 26 H 0.368 0.632 27 H 0.061 0.939 28 H 0.038 0.962 29 H 0.257 0.743 30 H 0.074 0.926 31 H 0.042 0.958 32 H 0.063 0.937 33 H 0.084 0.916 34 H 0.063 0.937 35 H 0.076 0.924 36 H 0.037 0.963 37 H 0.067 0.933 38 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.993 -3.219 -11.932 12.988 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.191 4.191 3 C 0.031 3.969 4 H 0.101 0.899 5 O -0.367 6.367 6 C -0.013 4.013 7 N -0.319 5.319 8 C -0.344 4.344 9 H 0.053 0.947 10 C -0.205 4.205 11 N -0.572 5.572 12 Si 0.721 3.279 13 H -0.237 1.237 14 H -0.231 1.231 15 H -0.166 1.166 16 C 0.057 3.943 17 C -0.178 4.178 18 C -0.148 4.148 19 C -0.154 4.154 20 C -0.167 4.167 21 H 0.085 0.915 22 H 0.063 0.937 23 H 0.074 0.926 24 H 0.101 0.899 25 H 0.076 0.924 26 H 0.215 0.785 27 H 0.079 0.921 28 H 0.056 0.944 29 H 0.066 0.934 30 H 0.092 0.908 31 H 0.061 0.939 32 H 0.082 0.918 33 H 0.103 0.897 34 H 0.082 0.918 35 H 0.095 0.905 36 H 0.056 0.944 37 H 0.086 0.914 38 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -4.289 -2.864 -12.206 13.251 hybrid contribution 1.236 -0.925 1.051 1.867 sum -3.053 -3.788 -11.156 12.171 Atomic orbital electron populations 1.21625 0.94633 1.01722 1.01687 1.22210 0.97485 0.96705 1.02718 1.22572 0.94911 0.92305 0.87152 0.89898 1.86479 1.75797 1.58596 1.15789 1.22023 0.93671 0.86082 0.99533 1.44225 1.72783 1.11361 1.03552 1.18195 1.30352 0.94279 0.91613 0.94727 1.25713 1.00588 0.99604 0.94593 1.70210 1.43135 1.43459 1.00434 0.86646 0.81507 0.80568 0.79175 1.23744 1.23078 1.16645 1.21301 0.93741 0.92265 0.86994 1.22821 0.98336 0.97159 0.99439 1.22388 0.98179 0.94898 0.99359 1.22233 0.96607 0.97554 0.99006 1.22452 0.98067 0.95805 1.00372 0.91541 0.93680 0.92585 0.89915 0.92435 0.78518 0.92061 0.94382 0.93418 0.90812 0.93918 0.91813 0.89699 0.91808 0.90506 0.94418 0.91409 0.94329 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.47 9.81 71.98 0.71 -2.76 16 2 C -0.15 -4.27 5.61 30.59 0.17 -4.10 16 3 C 0.09 3.27 3.24 30.59 0.10 3.37 16 4 H 0.08 2.91 8.14 -2.39 -0.02 2.89 16 5 O -0.56 -24.07 12.32 -148.98 -1.83 -25.91 16 6 C 0.11 4.49 3.62 86.38 0.31 4.80 16 7 N -0.60 -26.72 1.98 -674.03 -1.33 -28.06 16 8 C -0.21 -11.62 7.66 84.03 0.64 -10.97 16 9 H 0.04 2.15 7.09 -2.91 -0.02 2.13 16 10 C -0.01 -0.48 5.01 84.86 0.42 -0.05 16 11 N -0.93 -56.26 13.97 21.65 0.30 -55.96 16 12 Si 0.89 43.91 26.31 68.60 1.81 45.71 16 13 H -0.31 -15.78 7.11 99.48 0.71 -15.08 16 14 H -0.30 -15.07 7.11 99.48 0.71 -14.36 16 15 H -0.24 -10.91 5.82 99.48 0.58 -10.33 16 16 C 0.16 6.11 3.42 45.72 0.16 6.27 16 17 C -0.14 -4.92 6.43 31.70 0.20 -4.71 16 18 C -0.11 -3.19 6.91 31.91 0.22 -2.97 16 19 C -0.12 -3.74 6.83 31.67 0.22 -3.53 16 20 C -0.13 -4.64 6.12 31.32 0.19 -4.45 16 21 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 22 H 0.04 1.25 7.82 -2.39 -0.02 1.23 16 23 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 24 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 25 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 26 H 0.37 15.86 9.05 -74.05 -0.67 15.19 16 27 H 0.06 2.15 8.04 -2.39 -0.02 2.13 16 28 H 0.04 1.66 4.32 -2.39 -0.01 1.65 16 29 H 0.26 14.94 8.31 -92.71 -0.77 14.17 16 30 H 0.07 2.41 7.90 -2.39 -0.02 2.39 16 31 H 0.04 1.84 7.22 -2.39 -0.02 1.82 16 32 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 33 H 0.08 1.99 8.14 -2.38 -0.02 1.97 16 34 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 35 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 36 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 37 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 38 H 0.04 1.72 6.74 -2.39 -0.02 1.71 16 Total: -1.00 -62.88 295.32 2.50 -60.37 By element: Atomic # 1 Polarization: 22.74 SS G_CDS: 0.22 Total: 22.95 kcal Atomic # 6 Polarization: -22.46 SS G_CDS: 3.35 Total: -19.11 kcal Atomic # 7 Polarization: -82.99 SS G_CDS: -1.03 Total: -84.02 kcal Atomic # 8 Polarization: -24.07 SS G_CDS: -1.83 Total: -25.91 kcal Atomic # 14 Polarization: 43.91 SS G_CDS: 1.81 Total: 45.71 kcal Total: -62.88 2.50 -60.37 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070715005.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.649 kcal (2) G-P(sol) polarization free energy of solvation -62.877 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.525 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.503 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.374 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.023 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds