Wall clock time and date at job start Sun Mar 29 2020 21:48:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53004 * 109.46781 * 2 1 4 4 H 1.09000 * 109.46977 * 303.58001 * 3 2 1 5 5 C 1.50699 * 109.46825 * 183.58764 * 3 2 1 6 6 H 1.08004 * 119.99440 * 239.99932 * 5 3 2 7 7 C 1.37875 * 120.00461 * 59.99730 * 5 3 2 8 8 N 1.31513 * 119.99857 * 359.97438 * 7 5 3 9 9 Si 1.86800 * 120.00093 * 179.97438 * 7 5 3 10 10 H 1.48502 * 109.46960 * 0.02562 * 9 7 5 11 11 H 1.48504 * 109.47065 * 119.99792 * 9 7 5 12 12 H 1.48498 * 109.46941 * 239.99660 * 9 7 5 13 13 N 1.46900 * 109.47528 * 63.58215 * 3 2 1 14 14 C 1.48554 * 110.99918 * 180.21952 * 13 3 2 15 15 C 1.54385 * 104.59331 * 200.95930 * 14 13 3 16 16 C 1.54266 * 105.05720 * 23.85705 * 15 14 13 17 17 H 1.09000 * 110.32057 * 240.99713 * 16 15 14 18 18 C 1.53004 * 110.32256 * 118.89424 * 16 15 14 19 19 O 1.42899 * 109.47028 * 66.45109 * 18 16 15 20 20 C 1.42900 * 114.00208 * 179.97438 * 19 18 16 21 21 C 1.48559 * 110.99517 * 64.80036 * 13 3 2 22 22 H 1.08995 * 109.46933 * 174.78293 * 1 2 3 23 23 H 1.09002 * 109.47040 * 294.77878 * 1 2 3 24 24 H 1.09000 * 109.47472 * 54.78148 * 1 2 3 25 25 H 1.08998 * 109.47246 * 239.99990 * 2 1 3 26 26 H 1.08996 * 109.47177 * 119.99025 * 2 1 3 27 27 H 0.96996 * 119.99790 * 179.97438 * 8 7 5 28 28 H 1.08999 * 110.41272 * 82.18323 * 14 13 3 29 29 H 1.09000 * 110.41691 * 319.73987 * 14 13 3 30 30 H 1.08997 * 110.32402 * 264.95797 * 15 14 13 31 31 H 1.09004 * 110.40865 * 142.79260 * 15 14 13 32 32 H 1.09001 * 109.46938 * 306.45142 * 18 16 15 33 33 H 1.08993 * 109.46787 * 186.44867 * 18 16 15 34 34 H 1.08998 * 109.46958 * 59.99323 * 20 19 18 35 35 H 1.08993 * 109.47611 * 180.02562 * 20 19 18 36 36 H 1.09007 * 109.46732 * 300.00010 * 20 19 18 37 37 H 1.09004 * 110.41491 * 40.26731 * 21 13 3 38 38 H 1.09000 * 110.41640 * 277.81502 * 21 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6251 1.9745 -0.8562 5 6 3.5443 1.4435 -0.0889 6 1 4.1314 1.8946 0.6975 7 6 4.1712 0.8686 -1.1740 8 7 3.4564 0.3189 -2.1313 9 14 6.0360 0.8704 -1.2844 10 1 6.6020 1.5453 -0.0888 11 1 6.5298 -0.5289 -1.3425 12 1 6.4585 1.5957 -2.5094 13 7 1.6222 2.1097 1.2403 14 6 2.0961 3.5172 1.2733 15 6 2.0766 3.8993 2.7691 16 6 2.1860 2.5597 3.5263 17 1 1.3057 2.4044 4.1499 18 6 3.4538 2.5354 4.3826 19 8 3.3431 3.5065 5.4251 20 6 4.4809 3.5654 6.2877 21 6 2.2624 1.4811 2.4244 22 1 -0.3633 -1.0234 -0.0934 23 1 -0.3633 0.4307 0.9331 24 1 -0.3634 0.5926 -0.8395 25 1 1.8934 -0.5138 -0.8900 26 1 1.8934 -0.5137 0.8900 27 1 3.8974 -0.0852 -2.8948 28 1 1.4204 4.1592 0.7082 29 1 3.1089 3.5869 0.8764 30 1 1.1417 4.4005 3.0196 31 1 2.9251 4.5401 3.0088 32 1 4.3175 2.7679 3.7596 33 1 3.5775 1.5449 4.8203 34 1 5.3661 3.8189 5.7045 35 1 4.3186 4.3256 7.0517 36 1 4.6255 2.5961 6.7650 37 1 3.3012 1.2321 2.2076 38 1 1.7119 0.5900 2.7261 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000081063703.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:48:06 Heat of formation + Delta-G solvation = -52.275119 kcal Electronic energy + Delta-G solvation = -16787.617575 eV Core-core repulsion = 14243.781549 eV Total energy + Delta-G solvation = -2543.836026 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -38.81267 -37.27641 -34.25583 -31.74240 -30.48335 -28.45074 -26.98439 -26.03772 -24.18970 -23.00606 -20.90025 -19.54160 -18.90357 -16.52061 -16.25040 -15.74028 -15.43908 -14.75863 -14.38631 -13.83689 -13.19583 -12.97089 -12.67618 -12.34444 -12.08345 -11.91975 -11.50785 -11.27659 -11.06534 -10.91027 -10.63417 -10.60480 -10.46286 -10.30701 -9.95964 -9.87218 -9.66174 -9.49525 -9.42819 -9.06956 -8.37671 -7.20249 -6.00785 -4.13448 3.23199 3.32171 3.34232 3.89326 4.37108 5.06905 5.18618 5.24018 5.33052 5.35514 5.47423 5.56852 5.63298 5.76146 5.85207 5.96996 6.23846 6.31353 6.37063 6.47526 6.48555 6.64200 6.70756 6.76038 6.87438 6.92551 7.09471 7.19985 7.29809 7.32010 7.59631 7.73668 7.97609 8.14735 8.23074 8.43210 8.97050 9.53219 10.98929 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.022582 B = 0.008976 C = 0.007146 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1239.613465 B = 3118.766952 C = 3917.157531 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.110 4.110 3 C 0.201 3.799 4 H 0.039 0.961 5 C -0.542 4.542 6 H 0.059 0.941 7 C 0.068 3.932 8 N -0.884 5.884 9 Si 0.885 3.115 10 H -0.275 1.275 11 H -0.284 1.284 12 H -0.284 1.284 13 N -0.508 5.508 14 C 0.033 3.967 15 C -0.111 4.111 16 C -0.091 4.091 17 H 0.075 0.925 18 C 0.069 3.931 19 O -0.392 6.392 20 C 0.032 3.968 21 C 0.044 3.956 22 H 0.025 0.975 23 H 0.045 0.955 24 H 0.040 0.960 25 H 0.091 0.909 26 H 0.031 0.969 27 H 0.261 0.739 28 H 0.062 0.938 29 H 0.056 0.944 30 H 0.060 0.940 31 H 0.060 0.940 32 H 0.050 0.950 33 H 0.046 0.954 34 H 0.038 0.962 35 H 0.081 0.919 36 H 0.037 0.963 37 H 0.062 0.938 38 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.024 3.438 10.583 11.128 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.148 4.148 3 C 0.094 3.906 4 H 0.057 0.943 5 C -0.581 4.581 6 H 0.077 0.923 7 C -0.134 4.134 8 N -0.522 5.522 9 Si 0.713 3.287 10 H -0.200 1.200 11 H -0.210 1.210 12 H -0.210 1.210 13 N -0.231 5.231 14 C -0.095 4.095 15 C -0.150 4.150 16 C -0.111 4.111 17 H 0.094 0.906 18 C -0.008 4.008 19 O -0.311 6.311 20 C -0.065 4.065 21 C -0.084 4.084 22 H 0.044 0.956 23 H 0.064 0.936 24 H 0.059 0.941 25 H 0.110 0.890 26 H 0.050 0.950 27 H 0.071 0.929 28 H 0.081 0.919 29 H 0.074 0.926 30 H 0.079 0.921 31 H 0.078 0.922 32 H 0.068 0.932 33 H 0.065 0.935 34 H 0.057 0.943 35 H 0.100 0.900 36 H 0.056 0.944 37 H 0.080 0.920 38 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -0.763 3.412 10.417 10.988 hybrid contribution 2.318 -0.220 -0.230 2.340 sum 1.556 3.192 10.187 10.788 Atomic orbital electron populations 1.21702 0.98824 0.98357 1.00584 1.21561 0.92243 0.99075 1.01925 1.19410 0.92939 0.91279 0.86923 0.94273 1.21742 0.92746 1.37641 1.05988 0.92316 1.24911 0.97825 0.95063 0.95622 1.69886 1.34794 1.37889 1.09649 0.86649 0.86311 0.77728 0.77978 1.19970 1.20994 1.20985 1.65734 1.52439 1.01220 1.03751 1.22996 1.00004 0.91940 0.94608 1.22273 1.01062 0.96169 0.95459 1.21922 0.96243 0.96959 0.95934 0.90624 1.22687 0.98659 0.90859 0.88554 1.87869 1.40333 1.59743 1.43129 1.22688 0.89020 1.00963 0.93815 1.22935 0.99766 0.95584 0.90132 0.95613 0.93555 0.94133 0.89036 0.95046 0.92934 0.91921 0.92553 0.92139 0.92172 0.93164 0.93548 0.94287 0.90039 0.94390 0.92027 0.91588 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.83 9.72 37.16 0.36 -2.47 16 2 C -0.11 -2.60 5.15 -26.73 -0.14 -2.74 16 3 C 0.20 4.96 1.84 -68.86 -0.13 4.83 16 4 H 0.04 1.08 8.14 -51.93 -0.42 0.66 16 5 C -0.54 -14.24 6.50 -34.44 -0.22 -14.46 16 6 H 0.06 1.54 5.68 -52.48 -0.30 1.25 16 7 C 0.07 1.84 5.30 -17.82 -0.09 1.74 16 8 N -0.88 -24.67 11.30 55.43 0.63 -24.05 16 9 Si 0.89 20.85 29.54 -169.99 -5.02 15.83 16 10 H -0.27 -6.41 7.11 56.52 0.40 -6.00 16 11 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 12 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 13 N -0.51 -10.87 4.89 -223.40 -1.09 -11.96 16 14 C 0.03 0.65 6.29 -2.18 -0.01 0.64 16 15 C -0.11 -1.89 6.50 -25.34 -0.16 -2.06 16 16 C -0.09 -1.53 3.35 -89.23 -0.30 -1.83 16 17 H 0.08 1.24 8.14 -51.93 -0.42 0.81 16 18 C 0.07 1.06 5.01 37.16 0.19 1.24 16 19 O -0.39 -5.84 10.48 -35.23 -0.37 -6.21 16 20 C 0.03 0.36 11.01 101.05 1.11 1.47 16 21 C 0.04 0.86 4.85 -2.18 -0.01 0.85 16 22 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 23 H 0.05 0.92 7.86 -51.93 -0.41 0.51 16 24 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 25 H 0.09 2.42 5.98 -51.93 -0.31 2.11 16 26 H 0.03 0.73 6.90 -51.93 -0.36 0.37 16 27 H 0.26 6.95 8.31 -40.82 -0.34 6.61 16 28 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 29 H 0.06 1.22 6.25 -51.93 -0.32 0.90 16 30 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 31 H 0.06 0.99 7.66 -51.93 -0.40 0.59 16 32 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 33 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 34 H 0.04 0.41 8.14 -51.93 -0.42 -0.01 16 35 H 0.08 0.75 8.14 -51.93 -0.42 0.32 16 36 H 0.04 0.38 8.14 -51.93 -0.42 -0.05 16 37 H 0.06 1.32 5.59 -51.93 -0.29 1.03 16 38 H 0.07 1.26 7.61 -51.93 -0.40 0.86 16 LS Contribution 294.46 15.07 4.44 4.44 Total: -1.00 -27.56 294.46 -7.40 -34.95 By element: Atomic # 1 Polarization: 6.35 SS G_CDS: -6.57 Total: -0.21 kcal Atomic # 6 Polarization: -13.38 SS G_CDS: 0.59 Total: -12.79 kcal Atomic # 7 Polarization: -35.54 SS G_CDS: -0.47 Total: -36.01 kcal Atomic # 8 Polarization: -5.84 SS G_CDS: -0.37 Total: -6.21 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -5.02 Total: 15.83 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -27.56 -7.40 -34.95 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000081063703.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.322 kcal (2) G-P(sol) polarization free energy of solvation -27.555 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.877 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.398 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.953 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.275 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds