Wall clock time and date at job start Sun Mar 29 2020 21:48:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53004 * 109.46781 * 2 1 4 4 H 1.09000 * 109.46977 * 303.58001 * 3 2 1 5 5 C 1.50699 * 109.46825 * 183.58764 * 3 2 1 6 6 H 1.08004 * 119.99440 * 239.99932 * 5 3 2 7 7 C 1.37875 * 120.00461 * 59.99730 * 5 3 2 8 8 N 1.31513 * 119.99857 * 359.97438 * 7 5 3 9 9 Si 1.86800 * 120.00093 * 179.97438 * 7 5 3 10 10 H 1.48502 * 109.46960 * 0.02562 * 9 7 5 11 11 H 1.48504 * 109.47065 * 119.99792 * 9 7 5 12 12 H 1.48498 * 109.46941 * 239.99660 * 9 7 5 13 13 N 1.46900 * 109.47528 * 63.58215 * 3 2 1 14 14 C 1.48554 * 110.99918 * 180.21952 * 13 3 2 15 15 C 1.54385 * 104.59331 * 200.95930 * 14 13 3 16 16 C 1.54266 * 105.05720 * 23.85705 * 15 14 13 17 17 H 1.09000 * 110.32057 * 240.99713 * 16 15 14 18 18 C 1.53004 * 110.32256 * 118.89424 * 16 15 14 19 19 O 1.42899 * 109.47028 * 66.45109 * 18 16 15 20 20 C 1.42900 * 114.00208 * 179.97438 * 19 18 16 21 21 C 1.48559 * 110.99517 * 64.80036 * 13 3 2 22 22 H 1.08995 * 109.46933 * 174.78293 * 1 2 3 23 23 H 1.09002 * 109.47040 * 294.77878 * 1 2 3 24 24 H 1.09000 * 109.47472 * 54.78148 * 1 2 3 25 25 H 1.08998 * 109.47246 * 239.99990 * 2 1 3 26 26 H 1.08996 * 109.47177 * 119.99025 * 2 1 3 27 27 H 0.96996 * 119.99790 * 179.97438 * 8 7 5 28 28 H 1.08999 * 110.41272 * 82.18323 * 14 13 3 29 29 H 1.09000 * 110.41691 * 319.73987 * 14 13 3 30 30 H 1.08997 * 110.32402 * 264.95797 * 15 14 13 31 31 H 1.09004 * 110.40865 * 142.79260 * 15 14 13 32 32 H 1.09001 * 109.46938 * 306.45142 * 18 16 15 33 33 H 1.08993 * 109.46787 * 186.44867 * 18 16 15 34 34 H 1.08998 * 109.46958 * 59.99323 * 20 19 18 35 35 H 1.08993 * 109.47611 * 180.02562 * 20 19 18 36 36 H 1.09007 * 109.46732 * 300.00010 * 20 19 18 37 37 H 1.09004 * 110.41491 * 40.26731 * 21 13 3 38 38 H 1.09000 * 110.41640 * 277.81502 * 21 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6251 1.9745 -0.8562 5 6 3.5443 1.4435 -0.0889 6 1 4.1314 1.8946 0.6975 7 6 4.1712 0.8686 -1.1740 8 7 3.4564 0.3189 -2.1313 9 14 6.0360 0.8704 -1.2844 10 1 6.6020 1.5453 -0.0888 11 1 6.5298 -0.5289 -1.3425 12 1 6.4585 1.5957 -2.5094 13 7 1.6222 2.1097 1.2403 14 6 2.0961 3.5172 1.2733 15 6 2.0766 3.8993 2.7691 16 6 2.1860 2.5597 3.5263 17 1 1.3057 2.4044 4.1499 18 6 3.4538 2.5354 4.3826 19 8 3.3431 3.5065 5.4251 20 6 4.4809 3.5654 6.2877 21 6 2.2624 1.4811 2.4244 22 1 -0.3633 -1.0234 -0.0934 23 1 -0.3633 0.4307 0.9331 24 1 -0.3634 0.5926 -0.8395 25 1 1.8934 -0.5138 -0.8900 26 1 1.8934 -0.5137 0.8900 27 1 3.8974 -0.0852 -2.8948 28 1 1.4204 4.1592 0.7082 29 1 3.1089 3.5869 0.8764 30 1 1.1417 4.4005 3.0196 31 1 2.9251 4.5401 3.0088 32 1 4.3175 2.7679 3.7596 33 1 3.5775 1.5449 4.8203 34 1 5.3661 3.8189 5.7045 35 1 4.3186 4.3256 7.0517 36 1 4.6255 2.5961 6.7650 37 1 3.3012 1.2321 2.2076 38 1 1.7119 0.5900 2.7261 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000081063703.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:48:05 Heat of formation + Delta-G solvation = -69.613498 kcal Electronic energy + Delta-G solvation = -16788.369423 eV Core-core repulsion = 14243.781549 eV Total energy + Delta-G solvation = -2544.587874 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.32470 -38.53882 -36.00273 -33.68863 -32.04033 -29.99918 -28.46686 -27.49669 -25.58176 -24.77290 -22.56797 -21.06200 -20.68186 -18.43430 -17.43903 -17.16209 -16.89268 -16.19618 -15.93380 -15.34030 -14.89587 -14.74475 -14.29169 -13.85153 -13.59139 -13.32422 -13.19255 -12.87308 -12.70844 -12.49407 -12.32737 -12.27128 -11.91650 -11.80294 -11.74296 -11.57467 -11.36976 -11.19996 -10.96720 -10.58595 -10.43785 -9.02477 -8.04358 -6.25161 1.35151 1.38370 1.47318 2.39197 2.79650 3.15054 3.58213 3.87521 3.96882 4.14589 4.41842 4.48023 4.54329 4.56831 4.61992 4.63306 4.73472 4.77469 4.84683 4.85747 4.91825 5.01400 5.10794 5.17713 5.26260 5.32479 5.41805 5.43926 5.52201 5.62703 5.78227 6.04466 6.17734 6.24100 6.36457 6.50582 6.95900 7.44576 8.92349 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.022582 B = 0.008976 C = 0.007146 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1239.613465 B = 3118.766952 C = 3917.157531 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.104 4.104 3 C 0.208 3.792 4 H 0.002 0.998 5 C -0.547 4.547 6 H 0.055 0.945 7 C 0.020 3.980 8 N -0.912 5.912 9 Si 0.945 3.055 10 H -0.270 1.270 11 H -0.280 1.280 12 H -0.283 1.283 13 N -0.509 5.509 14 C 0.031 3.969 15 C -0.101 4.101 16 C -0.084 4.084 17 H 0.087 0.913 18 C 0.075 3.925 19 O -0.408 6.408 20 C 0.025 3.975 21 C 0.047 3.953 22 H 0.046 0.954 23 H 0.055 0.945 24 H 0.032 0.968 25 H 0.062 0.938 26 H 0.031 0.969 27 H 0.261 0.739 28 H 0.065 0.935 29 H 0.032 0.968 30 H 0.075 0.925 31 H 0.067 0.933 32 H 0.040 0.960 33 H 0.058 0.942 34 H 0.042 0.958 35 H 0.102 0.898 36 H 0.049 0.951 37 H 0.041 0.959 38 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.207 3.745 12.410 12.965 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.143 4.143 3 C 0.100 3.900 4 H 0.020 0.980 5 C -0.586 4.586 6 H 0.073 0.927 7 C -0.179 4.179 8 N -0.551 5.551 9 Si 0.771 3.229 10 H -0.194 1.194 11 H -0.206 1.206 12 H -0.209 1.209 13 N -0.233 5.233 14 C -0.097 4.097 15 C -0.139 4.139 16 C -0.103 4.103 17 H 0.105 0.895 18 C -0.001 4.001 19 O -0.327 6.327 20 C -0.071 4.071 21 C -0.081 4.081 22 H 0.065 0.935 23 H 0.074 0.926 24 H 0.051 0.949 25 H 0.080 0.920 26 H 0.050 0.950 27 H 0.070 0.930 28 H 0.083 0.917 29 H 0.050 0.950 30 H 0.094 0.906 31 H 0.085 0.915 32 H 0.058 0.942 33 H 0.076 0.924 34 H 0.060 0.940 35 H 0.120 0.880 36 H 0.068 0.932 37 H 0.059 0.941 38 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -0.530 3.727 12.263 12.828 hybrid contribution 2.236 -0.282 -0.766 2.381 sum 1.706 3.445 11.497 12.123 Atomic orbital electron populations 1.21567 0.96311 0.99666 1.00749 1.21409 0.94457 0.98030 1.00407 1.19177 0.91974 0.91622 0.87220 0.98021 1.21962 0.93779 1.37080 1.05777 0.92700 1.25615 1.01833 0.95002 0.95482 1.70012 1.36302 1.38668 1.10115 0.85707 0.81521 0.77718 0.77909 1.19432 1.20618 1.20884 1.65661 1.52538 1.01953 1.03117 1.23014 0.98533 0.91243 0.96930 1.22205 1.02201 0.96546 0.92946 1.21832 0.97703 0.95458 0.95335 0.89461 1.22515 0.97191 0.91761 0.88674 1.87826 1.42057 1.59538 1.43277 1.22926 0.88026 1.02442 0.93752 1.22901 0.98280 0.96724 0.90238 0.93540 0.92563 0.94870 0.91954 0.94999 0.92959 0.91651 0.94976 0.90596 0.91465 0.94168 0.92358 0.93962 0.88006 0.93189 0.94125 0.91087 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.08 9.72 71.98 0.70 -4.38 16 2 C -0.10 -5.00 5.15 30.60 0.16 -4.85 16 3 C 0.21 10.44 1.84 44.17 0.08 10.52 16 4 H 0.00 0.11 8.14 -2.39 -0.02 0.09 16 5 C -0.55 -29.22 6.50 25.60 0.17 -29.06 16 6 H 0.05 2.92 5.68 -2.91 -0.02 2.91 16 7 C 0.02 1.11 5.30 84.65 0.45 1.56 16 8 N -0.91 -51.97 11.30 21.45 0.24 -51.72 16 9 Si 0.95 43.13 29.54 68.60 2.03 45.16 16 10 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 11 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 12 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 13 N -0.51 -21.71 4.89 -860.72 -4.21 -25.92 16 14 C 0.03 1.23 6.29 86.45 0.54 1.78 16 15 C -0.10 -3.24 6.50 31.49 0.20 -3.04 16 16 C -0.08 -2.66 3.35 -9.90 -0.03 -2.69 16 17 H 0.09 2.59 8.14 -2.39 -0.02 2.57 16 18 C 0.08 2.15 5.01 71.98 0.36 2.51 16 19 O -0.41 -11.06 10.48 -148.98 -1.56 -12.63 16 20 C 0.02 0.48 11.01 113.37 1.25 1.73 16 21 C 0.05 1.79 4.85 86.45 0.42 2.21 16 22 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 23 H 0.06 2.14 7.86 -2.39 -0.02 2.13 16 24 H 0.03 1.36 8.14 -2.39 -0.02 1.34 16 25 H 0.06 3.37 5.98 -2.39 -0.01 3.35 16 26 H 0.03 1.48 6.90 -2.39 -0.02 1.46 16 27 H 0.26 14.18 8.31 -92.71 -0.77 13.41 16 28 H 0.07 2.50 8.14 -2.39 -0.02 2.48 16 29 H 0.03 1.41 6.25 -2.39 -0.01 1.40 16 30 H 0.08 2.22 8.14 -2.39 -0.02 2.21 16 31 H 0.07 2.08 7.66 -2.38 -0.02 2.06 16 32 H 0.04 1.22 8.14 -2.39 -0.02 1.20 16 33 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 34 H 0.04 0.79 8.14 -2.39 -0.02 0.77 16 35 H 0.10 1.55 8.14 -2.39 -0.02 1.53 16 36 H 0.05 0.85 8.14 -2.38 -0.02 0.83 16 37 H 0.04 1.73 5.59 -2.38 -0.01 1.71 16 38 H 0.07 2.61 7.61 -2.39 -0.02 2.59 16 Total: -1.00 -58.68 294.46 1.80 -56.88 By element: Atomic # 1 Polarization: 10.94 SS G_CDS: 1.01 Total: 11.95 kcal Atomic # 6 Polarization: -28.01 SS G_CDS: 4.30 Total: -23.72 kcal Atomic # 7 Polarization: -73.68 SS G_CDS: -3.96 Total: -77.64 kcal Atomic # 8 Polarization: -11.06 SS G_CDS: -1.56 Total: -12.63 kcal Atomic # 14 Polarization: 43.13 SS G_CDS: 2.03 Total: 45.16 kcal Total: -58.68 1.80 -56.88 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000081063703.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.735 kcal (2) G-P(sol) polarization free energy of solvation -58.681 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.416 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.803 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.878 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.613 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds