Wall clock time and date at job start Sun Mar 29 2020 21:52:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53010 * 109.47145 * 2 1 4 4 H 1.08995 * 109.46643 * 56.24509 * 3 2 1 5 5 C 1.50696 * 109.47284 * 176.24846 * 3 2 1 6 6 H 1.07999 * 120.00196 * 119.99861 * 5 3 2 7 7 C 1.37887 * 120.00025 * 300.00177 * 5 3 2 8 8 N 1.31520 * 119.99464 * 0.02562 * 7 5 3 9 9 Si 1.86797 * 120.00108 * 180.02562 * 7 5 3 10 10 H 1.48492 * 109.47314 * 59.99403 * 9 7 5 11 11 H 1.48500 * 109.46676 * 179.97438 * 9 7 5 12 12 H 1.48501 * 109.46691 * 299.99245 * 9 7 5 13 13 N 1.46901 * 109.46789 * 296.24753 * 3 2 1 14 14 C 1.46906 * 110.99515 * 144.64951 * 13 3 2 15 15 H 1.08993 * 108.96421 * 328.38034 * 14 13 3 16 16 C 1.54201 * 108.97381 * 209.66005 * 14 13 3 17 17 C 1.50625 * 109.06315 * 161.82569 * 16 14 13 18 18 C 1.53815 * 112.46697 * 90.32930 * 17 16 14 19 19 O 1.43988 * 113.41369 * 317.88766 * 18 17 16 20 20 C 1.40322 * 116.57975 * 317.89403 * 19 18 17 21 21 C 1.46281 * 108.97560 * 87.18558 * 14 13 3 22 22 H 1.08996 * 109.46743 * 185.13978 * 1 2 3 23 23 H 1.08994 * 109.47133 * 305.14221 * 1 2 3 24 24 H 1.08997 * 109.46934 * 65.14188 * 1 2 3 25 25 H 1.09005 * 109.47182 * 240.00358 * 2 1 3 26 26 H 1.08997 * 109.47230 * 119.99867 * 2 1 3 27 27 H 0.97004 * 119.99432 * 180.02562 * 8 7 5 28 28 H 1.00902 * 110.99960 * 268.59882 * 13 3 2 29 29 H 1.08999 * 109.54366 * 281.70337 * 16 14 13 30 30 H 1.09002 * 109.53759 * 41.95259 * 16 14 13 31 31 H 1.09000 * 108.88330 * 329.55992 * 17 16 14 32 32 H 1.08998 * 108.88450 * 211.10420 * 17 16 14 33 33 H 1.08999 * 108.69985 * 196.87321 * 18 17 16 34 34 H 1.09003 * 108.59396 * 78.82740 * 18 17 16 35 35 H 1.08998 * 109.60190 * 335.27087 * 20 19 18 36 36 H 1.09003 * 109.59867 * 214.80380 * 20 19 18 37 37 H 1.08994 * 108.94074 * 302.75852 * 21 14 13 38 38 H 1.09003 * 108.93953 * 61.45384 * 21 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6228 1.9754 0.8544 5 6 3.5441 1.4436 0.0930 6 1 4.1334 1.8939 -0.6922 7 6 4.1681 0.8697 1.1804 8 7 3.4504 0.3210 2.1362 9 14 6.0324 0.8716 1.2960 10 1 6.5270 2.2718 1.2963 11 1 6.4511 0.1990 2.5520 12 1 6.6012 0.1460 0.1319 13 7 1.6257 2.1084 -1.2422 14 6 1.3133 3.5236 -1.0020 15 1 0.9171 3.6324 0.0075 16 6 0.2404 3.9786 -2.0118 17 6 -0.4014 5.2456 -1.5102 18 6 0.3195 6.5082 -2.0122 19 8 1.7548 6.4021 -1.9710 20 6 2.3077 5.8038 -0.8284 21 6 2.5423 4.3083 -1.1178 22 1 -0.3633 -1.0235 0.0921 23 1 -0.3633 0.5915 0.8403 24 1 -0.3633 0.4320 -0.9324 25 1 1.8933 -0.5138 -0.8901 26 1 1.8933 -0.5138 0.8900 27 1 3.8894 -0.0825 2.9015 28 1 2.3305 2.0100 -1.9576 29 1 0.7060 4.1642 -2.9797 30 1 -0.5173 3.2016 -2.1134 31 1 -0.3869 5.2409 -0.4203 32 1 -1.4376 5.2734 -1.8471 33 1 0.0139 7.3535 -1.3956 34 1 0.0126 6.6979 -3.0408 35 1 1.6190 5.9103 0.0096 36 1 3.2568 6.2829 -0.5878 37 1 3.2766 3.9222 -0.4109 38 1 2.9356 4.2026 -2.1289 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000083425683.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:52:22 Heat of formation + Delta-G solvation = -62.490180 kcal Electronic energy + Delta-G solvation = -16908.638206 eV Core-core repulsion = 14364.359221 eV Total energy + Delta-G solvation = -2544.278984 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.25819 -36.51155 -33.98605 -32.40686 -31.54594 -29.57708 -26.80645 -25.68605 -24.21374 -22.45764 -20.46314 -20.08945 -19.34080 -16.61219 -16.36965 -15.99409 -14.95370 -14.73622 -14.07171 -13.69843 -13.60204 -12.95894 -12.76231 -12.55619 -11.99488 -11.92562 -11.32739 -11.27659 -11.15443 -11.02211 -10.71764 -10.65112 -10.45556 -10.22861 -10.13262 -10.03544 -9.55931 -9.41548 -9.13550 -8.97942 -8.37887 -7.20156 -6.00461 -4.12362 3.27315 3.32793 3.35332 4.06469 4.38507 4.89945 5.07618 5.21173 5.29103 5.34712 5.39352 5.64243 5.71373 5.82617 5.85317 6.04588 6.14622 6.32935 6.37467 6.42574 6.50481 6.53748 6.65497 6.73647 6.79584 7.00196 7.16421 7.19474 7.49502 7.60609 7.62795 7.78333 8.11132 8.16869 8.37763 8.70291 9.02098 9.54663 11.00056 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.026791 B = 0.008659 C = 0.006926 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1044.895520 B = 3232.967632 C = 4041.611381 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.106 4.106 3 C 0.216 3.784 4 H 0.027 0.973 5 C -0.542 4.542 6 H 0.055 0.945 7 C 0.067 3.933 8 N -0.885 5.885 9 Si 0.887 3.113 10 H -0.278 1.278 11 H -0.287 1.287 12 H -0.277 1.277 13 N -0.687 5.687 14 C 0.098 3.902 15 H 0.061 0.939 16 C -0.106 4.106 17 C -0.153 4.153 18 C 0.066 3.934 19 O -0.389 6.389 20 C 0.070 3.930 21 C -0.176 4.176 22 H 0.023 0.977 23 H 0.034 0.966 24 H 0.046 0.954 25 H 0.030 0.970 26 H 0.088 0.912 27 H 0.261 0.739 28 H 0.329 0.671 29 H 0.059 0.941 30 H 0.070 0.930 31 H 0.062 0.938 32 H 0.068 0.932 33 H 0.043 0.957 34 H 0.081 0.919 35 H 0.048 0.952 36 H 0.078 0.922 37 H 0.090 0.910 38 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.574 8.261 -5.162 11.223 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.144 4.144 3 C 0.108 3.892 4 H 0.045 0.955 5 C -0.581 4.581 6 H 0.073 0.927 7 C -0.136 4.136 8 N -0.523 5.523 9 Si 0.715 3.285 10 H -0.204 1.204 11 H -0.213 1.213 12 H -0.203 1.203 13 N -0.316 5.316 14 C -0.013 4.013 15 H 0.080 0.920 16 C -0.144 4.144 17 C -0.191 4.191 18 C -0.011 4.011 19 O -0.308 6.308 20 C -0.008 4.008 21 C -0.215 4.215 22 H 0.042 0.958 23 H 0.053 0.947 24 H 0.065 0.935 25 H 0.049 0.951 26 H 0.106 0.894 27 H 0.071 0.929 28 H 0.146 0.854 29 H 0.078 0.922 30 H 0.088 0.912 31 H 0.081 0.919 32 H 0.087 0.913 33 H 0.061 0.939 34 H 0.099 0.901 35 H 0.066 0.934 36 H 0.096 0.904 37 H 0.109 0.891 38 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -6.119 7.991 -5.055 11.263 hybrid contribution 1.830 0.195 0.577 1.928 sum -4.289 8.186 -4.478 10.269 Atomic orbital electron populations 1.21681 0.99168 0.98173 1.00241 1.21506 0.91941 0.99443 1.01548 1.19203 0.92725 0.91149 0.86100 0.95481 1.21833 0.92516 1.37806 1.05906 0.92701 1.24943 0.97890 0.95014 0.95719 1.69877 1.34978 1.37827 1.09629 0.86735 0.86171 0.78190 0.77366 1.20392 1.21283 1.20283 1.60975 1.48274 1.10290 1.12036 1.20449 0.93665 0.89465 0.97712 0.92035 1.21340 0.98622 0.95299 0.99145 1.21916 0.99862 0.95666 1.01641 1.22881 0.80836 0.96147 1.01215 1.87413 1.19894 1.80778 1.42682 1.22333 0.97552 0.93334 0.87539 1.21957 1.00882 0.95308 1.03323 0.95762 0.94663 0.93481 0.95069 0.89379 0.92861 0.85436 0.92208 0.91178 0.91931 0.91298 0.93920 0.90098 0.93381 0.90407 0.89148 0.91897 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.80 9.73 37.16 0.36 -2.44 16 2 C -0.11 -2.54 5.44 -26.73 -0.15 -2.68 16 3 C 0.22 5.24 1.99 -68.86 -0.14 5.10 16 4 H 0.03 0.73 7.20 -51.93 -0.37 0.36 16 5 C -0.54 -14.19 7.22 -34.44 -0.25 -14.44 16 6 H 0.05 1.42 7.28 -52.49 -0.38 1.04 16 7 C 0.07 1.80 5.30 -17.81 -0.09 1.71 16 8 N -0.88 -24.75 11.30 55.43 0.63 -24.13 16 9 Si 0.89 20.93 29.54 -169.99 -5.02 15.91 16 10 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 11 H -0.29 -6.77 7.11 56.52 0.40 -6.36 16 12 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 13 N -0.69 -14.18 5.53 -103.67 -0.57 -14.76 16 14 C 0.10 1.77 2.06 -70.28 -0.15 1.63 16 15 H 0.06 1.21 6.69 -51.93 -0.35 0.87 16 16 C -0.11 -1.62 5.21 -27.29 -0.14 -1.76 16 17 C -0.15 -1.96 5.32 -27.50 -0.15 -2.11 16 18 C 0.07 0.82 6.67 37.58 0.25 1.07 16 19 O -0.39 -5.96 10.17 -33.69 -0.34 -6.31 16 20 C 0.07 1.08 6.38 37.74 0.24 1.32 16 21 C -0.18 -3.12 4.58 -29.34 -0.13 -3.25 16 22 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 23 H 0.03 0.73 8.14 -51.93 -0.42 0.30 16 24 H 0.05 0.93 7.86 -51.93 -0.41 0.52 16 25 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 26 H 0.09 2.35 5.98 -51.93 -0.31 2.04 16 27 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 28 H 0.33 6.87 7.78 -39.29 -0.31 6.57 16 29 H 0.06 0.93 7.82 -51.93 -0.41 0.52 16 30 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 31 H 0.06 0.84 6.83 -51.93 -0.35 0.48 16 32 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.04 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 35 H 0.05 0.71 6.98 -51.93 -0.36 0.34 16 36 H 0.08 1.13 8.14 -51.93 -0.42 0.70 16 37 H 0.09 1.85 6.40 -51.93 -0.33 1.52 16 38 H 0.06 1.13 8.05 -51.93 -0.42 0.71 16 LS Contribution 290.07 15.07 4.37 4.37 Total: -1.00 -27.02 290.07 -7.80 -34.82 By element: Atomic # 1 Polarization: 12.47 SS G_CDS: -6.52 Total: 5.95 kcal Atomic # 6 Polarization: -15.52 SS G_CDS: -0.34 Total: -15.86 kcal Atomic # 7 Polarization: -38.94 SS G_CDS: 0.05 Total: -38.88 kcal Atomic # 8 Polarization: -5.96 SS G_CDS: -0.34 Total: -6.31 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.91 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -27.02 -7.80 -34.82 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083425683.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.671 kcal (2) G-P(sol) polarization free energy of solvation -27.020 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.691 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.799 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.819 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.490 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds