Wall clock time and date at job start Sun Mar 29 2020 21:52:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53010 * 109.47145 * 2 1 4 4 H 1.08995 * 109.46643 * 56.24509 * 3 2 1 5 5 C 1.50696 * 109.47284 * 176.24846 * 3 2 1 6 6 H 1.07999 * 120.00196 * 119.99861 * 5 3 2 7 7 C 1.37887 * 120.00025 * 300.00177 * 5 3 2 8 8 N 1.31520 * 119.99464 * 0.02562 * 7 5 3 9 9 Si 1.86797 * 120.00108 * 180.02562 * 7 5 3 10 10 H 1.48492 * 109.47314 * 59.99403 * 9 7 5 11 11 H 1.48500 * 109.46676 * 179.97438 * 9 7 5 12 12 H 1.48501 * 109.46691 * 299.99245 * 9 7 5 13 13 N 1.46901 * 109.46789 * 296.24753 * 3 2 1 14 14 C 1.46906 * 110.99515 * 144.64951 * 13 3 2 15 15 H 1.08993 * 108.96421 * 328.38034 * 14 13 3 16 16 C 1.54201 * 108.97381 * 209.66005 * 14 13 3 17 17 C 1.50625 * 109.06315 * 161.82569 * 16 14 13 18 18 C 1.53815 * 112.46697 * 90.32930 * 17 16 14 19 19 O 1.43988 * 113.41369 * 317.88766 * 18 17 16 20 20 C 1.40322 * 116.57975 * 317.89403 * 19 18 17 21 21 C 1.46281 * 108.97560 * 87.18558 * 14 13 3 22 22 H 1.08996 * 109.46743 * 185.13978 * 1 2 3 23 23 H 1.08994 * 109.47133 * 305.14221 * 1 2 3 24 24 H 1.08997 * 109.46934 * 65.14188 * 1 2 3 25 25 H 1.09005 * 109.47182 * 240.00358 * 2 1 3 26 26 H 1.08997 * 109.47230 * 119.99867 * 2 1 3 27 27 H 0.97004 * 119.99432 * 180.02562 * 8 7 5 28 28 H 1.00902 * 110.99960 * 268.59882 * 13 3 2 29 29 H 1.08999 * 109.54366 * 281.70337 * 16 14 13 30 30 H 1.09002 * 109.53759 * 41.95259 * 16 14 13 31 31 H 1.09000 * 108.88330 * 329.55992 * 17 16 14 32 32 H 1.08998 * 108.88450 * 211.10420 * 17 16 14 33 33 H 1.08999 * 108.69985 * 196.87321 * 18 17 16 34 34 H 1.09003 * 108.59396 * 78.82740 * 18 17 16 35 35 H 1.08998 * 109.60190 * 335.27087 * 20 19 18 36 36 H 1.09003 * 109.59867 * 214.80380 * 20 19 18 37 37 H 1.08994 * 108.94074 * 302.75852 * 21 14 13 38 38 H 1.09003 * 108.93953 * 61.45384 * 21 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6228 1.9754 0.8544 5 6 3.5441 1.4436 0.0930 6 1 4.1334 1.8939 -0.6922 7 6 4.1681 0.8697 1.1804 8 7 3.4504 0.3210 2.1362 9 14 6.0324 0.8716 1.2960 10 1 6.5270 2.2718 1.2963 11 1 6.4511 0.1990 2.5520 12 1 6.6012 0.1460 0.1319 13 7 1.6257 2.1084 -1.2422 14 6 1.3133 3.5236 -1.0020 15 1 0.9171 3.6324 0.0075 16 6 0.2404 3.9786 -2.0118 17 6 -0.4014 5.2456 -1.5102 18 6 0.3195 6.5082 -2.0122 19 8 1.7548 6.4021 -1.9710 20 6 2.3077 5.8038 -0.8284 21 6 2.5423 4.3083 -1.1178 22 1 -0.3633 -1.0235 0.0921 23 1 -0.3633 0.5915 0.8403 24 1 -0.3633 0.4320 -0.9324 25 1 1.8933 -0.5138 -0.8901 26 1 1.8933 -0.5138 0.8900 27 1 3.8894 -0.0825 2.9015 28 1 2.3305 2.0100 -1.9576 29 1 0.7060 4.1642 -2.9797 30 1 -0.5173 3.2016 -2.1134 31 1 -0.3869 5.2409 -0.4203 32 1 -1.4376 5.2734 -1.8471 33 1 0.0139 7.3535 -1.3956 34 1 0.0126 6.6979 -3.0408 35 1 1.6190 5.9103 0.0096 36 1 3.2568 6.2829 -0.5878 37 1 3.2766 3.9222 -0.4109 38 1 2.9356 4.2026 -2.1289 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000083425683.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:52:22 Heat of formation + Delta-G solvation = -79.274369 kcal Electronic energy + Delta-G solvation = -16909.366023 eV Core-core repulsion = 14364.359221 eV Total energy + Delta-G solvation = -2545.006801 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.55337 -38.10544 -35.61978 -33.81718 -33.33454 -31.18161 -28.51216 -27.04181 -25.71880 -24.25831 -21.76160 -21.61133 -21.02330 -18.56509 -17.61124 -17.30372 -16.71630 -16.07356 -15.63316 -15.29126 -15.12044 -14.53558 -14.25434 -14.07443 -13.57478 -13.16771 -13.10949 -13.07106 -12.96391 -12.59427 -12.30429 -12.21770 -11.99618 -11.75577 -11.66707 -11.45382 -11.31232 -11.06547 -10.89615 -10.44405 -10.40724 -8.96203 -8.04810 -6.24926 1.38677 1.39739 1.46705 2.40181 2.96182 3.15051 3.62085 3.88107 4.02171 4.06245 4.24028 4.42036 4.46090 4.54183 4.63088 4.73605 4.77322 4.78383 4.91670 4.96758 5.06838 5.15940 5.18518 5.25357 5.29422 5.42279 5.46262 5.52117 5.59166 5.67680 5.78738 6.11676 6.22934 6.44229 6.49860 6.85299 7.06425 7.45595 8.92264 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.026791 B = 0.008659 C = 0.006926 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1044.895520 B = 3232.967632 C = 4041.611381 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.103 4.103 3 C 0.225 3.775 4 H -0.005 1.005 5 C -0.550 4.550 6 H 0.053 0.947 7 C 0.019 3.981 8 N -0.912 5.912 9 Si 0.947 3.053 10 H -0.274 1.274 11 H -0.285 1.285 12 H -0.274 1.274 13 N -0.680 5.680 14 C 0.098 3.902 15 H 0.042 0.958 16 C -0.095 4.095 17 C -0.149 4.149 18 C 0.060 3.940 19 O -0.401 6.401 20 C 0.078 3.922 21 C -0.168 4.168 22 H 0.042 0.958 23 H 0.029 0.971 24 H 0.057 0.943 25 H 0.026 0.974 26 H 0.059 0.941 27 H 0.261 0.739 28 H 0.328 0.672 29 H 0.061 0.939 30 H 0.067 0.933 31 H 0.055 0.945 32 H 0.096 0.904 33 H 0.062 0.938 34 H 0.100 0.900 35 H 0.054 0.946 36 H 0.086 0.914 37 H 0.057 0.943 38 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.151 9.368 -6.217 12.816 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.142 4.142 3 C 0.117 3.883 4 H 0.012 0.988 5 C -0.589 4.589 6 H 0.071 0.929 7 C -0.181 4.181 8 N -0.551 5.551 9 Si 0.773 3.227 10 H -0.199 1.199 11 H -0.211 1.211 12 H -0.199 1.199 13 N -0.309 5.309 14 C -0.012 4.012 15 H 0.061 0.939 16 C -0.133 4.133 17 C -0.187 4.187 18 C -0.016 4.016 19 O -0.321 6.321 20 C 0.000 4.000 21 C -0.207 4.207 22 H 0.061 0.939 23 H 0.048 0.952 24 H 0.076 0.924 25 H 0.045 0.955 26 H 0.077 0.923 27 H 0.070 0.930 28 H 0.144 0.856 29 H 0.079 0.921 30 H 0.086 0.914 31 H 0.073 0.927 32 H 0.114 0.886 33 H 0.080 0.920 34 H 0.119 0.881 35 H 0.072 0.928 36 H 0.104 0.896 37 H 0.076 0.924 38 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -6.705 9.115 -6.124 12.866 hybrid contribution 1.969 -0.129 0.879 2.160 sum -4.736 8.986 -5.245 11.432 Atomic orbital electron populations 1.21533 0.96506 0.99421 1.00525 1.21385 0.94329 0.98727 0.99779 1.18954 0.91648 0.91312 0.86422 0.98752 1.22115 0.93723 1.37267 1.05769 0.92919 1.25652 1.01906 0.94923 0.95584 1.70008 1.36440 1.38605 1.10057 0.85791 0.81382 0.78233 0.77302 1.19928 1.21074 1.19894 1.60957 1.47595 1.12011 1.10290 1.20539 0.94770 0.88098 0.97810 0.93947 1.21219 0.97437 0.96572 0.98109 1.21887 1.01206 0.94473 1.01161 1.23118 0.79180 0.96401 1.02916 1.87396 1.21799 1.80465 1.42410 1.22198 0.98385 0.91449 0.87936 1.21818 0.99638 0.97215 1.02038 0.93866 0.95217 0.92390 0.95546 0.92296 0.92993 0.85551 0.92066 0.91383 0.92660 0.88585 0.92022 0.88150 0.92780 0.89561 0.92410 0.92216 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.99 9.73 71.98 0.70 -4.29 16 2 C -0.10 -5.03 5.44 30.60 0.17 -4.86 16 3 C 0.23 11.18 1.99 44.17 0.09 11.27 16 4 H -0.01 -0.30 7.20 -2.39 -0.02 -0.32 16 5 C -0.55 -29.38 7.22 25.60 0.18 -29.20 16 6 H 0.05 2.78 7.28 -2.91 -0.02 2.76 16 7 C 0.02 1.05 5.30 84.66 0.45 1.50 16 8 N -0.91 -52.14 11.30 21.45 0.24 -51.90 16 9 Si 0.95 43.35 29.54 68.60 2.03 45.38 16 10 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 11 H -0.29 -12.89 7.11 99.48 0.71 -12.18 16 12 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 13 N -0.68 -28.23 5.53 -481.91 -2.67 -30.89 16 14 C 0.10 3.55 2.06 43.25 0.09 3.64 16 15 H 0.04 1.70 6.69 -2.39 -0.02 1.68 16 16 C -0.10 -2.75 5.21 30.23 0.16 -2.59 16 17 C -0.15 -3.43 5.32 30.10 0.16 -3.27 16 18 C 0.06 1.29 6.67 72.26 0.48 1.77 16 19 O -0.40 -11.40 10.17 -143.45 -1.46 -12.86 16 20 C 0.08 2.32 6.38 72.36 0.46 2.79 16 21 C -0.17 -5.96 4.58 28.91 0.13 -5.83 16 22 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 23 H 0.03 1.21 8.14 -2.39 -0.02 1.19 16 24 H 0.06 2.22 7.86 -2.39 -0.02 2.20 16 25 H 0.03 1.26 8.14 -2.38 -0.02 1.24 16 26 H 0.06 3.22 5.98 -2.39 -0.01 3.21 16 27 H 0.26 14.29 8.31 -92.71 -0.77 13.52 16 28 H 0.33 13.75 7.78 -89.69 -0.70 13.05 16 29 H 0.06 1.76 7.82 -2.39 -0.02 1.74 16 30 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 31 H 0.05 1.37 6.83 -2.39 -0.02 1.35 16 32 H 0.10 1.73 8.14 -2.39 -0.02 1.71 16 33 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 34 H 0.10 1.82 8.14 -2.39 -0.02 1.80 16 35 H 0.05 1.53 6.98 -2.39 -0.02 1.51 16 36 H 0.09 2.40 8.14 -2.39 -0.02 2.38 16 37 H 0.06 2.42 6.40 -2.39 -0.02 2.40 16 38 H 0.06 2.13 8.05 -2.39 -0.02 2.11 16 Total: -1.00 -58.02 290.07 1.54 -56.48 By element: Atomic # 1 Polarization: 22.55 SS G_CDS: 0.32 Total: 22.87 kcal Atomic # 6 Polarization: -32.15 SS G_CDS: 3.07 Total: -29.08 kcal Atomic # 7 Polarization: -80.37 SS G_CDS: -2.42 Total: -82.79 kcal Atomic # 8 Polarization: -11.40 SS G_CDS: -1.46 Total: -12.86 kcal Atomic # 14 Polarization: 43.35 SS G_CDS: 2.03 Total: 45.38 kcal Total: -58.02 1.54 -56.48 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083425683.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.794 kcal (2) G-P(sol) polarization free energy of solvation -58.016 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.810 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.536 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.480 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.274 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds