Wall clock time and date at job start Sun Mar 29 2020 21:52:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.46727 * 2 1 4 4 H 1.08993 * 109.47665 * 303.98913 * 3 2 1 5 5 C 1.50699 * 109.47037 * 183.98653 * 3 2 1 6 6 H 1.07998 * 120.00194 * 240.00440 * 5 3 2 7 7 C 1.37883 * 119.99914 * 60.00542 * 5 3 2 8 8 N 1.31515 * 119.99715 * 359.97438 * 7 5 3 9 9 Si 1.86799 * 120.00229 * 180.02562 * 7 5 3 10 10 H 1.48498 * 109.47367 * 59.99575 * 9 7 5 11 11 H 1.48498 * 109.47046 * 180.02562 * 9 7 5 12 12 H 1.48505 * 109.46580 * 300.00006 * 9 7 5 13 13 N 1.46901 * 109.46978 * 63.99257 * 3 2 1 14 14 C 1.46898 * 111.00020 * 204.84842 * 13 3 2 15 15 H 1.09000 * 108.96032 * 328.21459 * 14 13 3 16 16 C 1.54211 * 108.97663 * 209.49928 * 14 13 3 17 17 C 1.50619 * 109.06116 * 161.82508 * 16 14 13 18 18 C 1.53814 * 112.46983 * 90.32882 * 17 16 14 19 19 O 1.43988 * 113.41158 * 317.88770 * 18 17 16 20 20 C 1.40327 * 116.57877 * 317.88824 * 19 18 17 21 21 C 1.46279 * 108.97780 * 87.02132 * 14 13 3 22 22 H 1.08999 * 109.47740 * 54.86518 * 1 2 3 23 23 H 1.09005 * 109.47037 * 174.86880 * 1 2 3 24 24 H 1.08997 * 109.47103 * 294.85883 * 1 2 3 25 25 H 1.09000 * 109.47372 * 120.00365 * 2 1 3 26 26 H 1.08999 * 109.46878 * 240.00749 * 2 1 3 27 27 H 0.96998 * 119.99671 * 179.97438 * 8 7 5 28 28 H 1.00899 * 111.00123 * 80.88848 * 13 3 2 29 29 H 1.08994 * 109.53889 * 281.70168 * 16 14 13 30 30 H 1.09002 * 109.53811 * 41.94900 * 16 14 13 31 31 H 1.09001 * 108.88757 * 329.55282 * 17 16 14 32 32 H 1.09006 * 108.88140 * 211.09962 * 17 16 14 33 33 H 1.08993 * 108.69845 * 196.86241 * 18 17 16 34 34 H 1.09006 * 108.59247 * 78.82634 * 18 17 16 35 35 H 1.09002 * 109.60004 * 335.27522 * 20 19 18 36 36 H 1.08997 * 109.59899 * 214.80744 * 20 19 18 37 37 H 1.09000 * 108.93957 * 302.76336 * 21 14 13 38 38 H 1.09002 * 108.93943 * 61.45534 * 21 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6194 1.9766 -0.8520 5 6 3.5436 1.4438 -0.0988 6 1 4.1359 1.8929 0.6847 7 6 4.1634 0.8715 -1.1895 8 7 3.4421 0.3242 -2.1433 9 14 6.0273 0.8723 -1.3117 10 1 6.5999 0.1444 -0.1509 11 1 6.4412 0.2018 -2.5703 12 1 6.5227 2.2723 -1.3112 13 7 1.6305 2.1066 1.2448 14 6 1.5579 3.5628 1.0654 15 1 2.3061 3.8671 0.3334 16 6 1.8669 4.2498 2.4110 17 6 2.2333 5.6883 2.1561 18 6 1.0108 6.6212 2.1893 19 8 -0.1424 6.0770 1.5206 20 6 0.0890 5.4265 0.2989 21 6 0.2300 3.9146 0.5629 22 1 -0.3634 0.5914 -0.8404 23 1 -0.3633 -1.0236 -0.0919 24 1 -0.3633 0.4320 0.9324 25 1 1.8934 -0.5139 0.8899 26 1 1.8933 -0.5137 -0.8901 27 1 3.8780 -0.0781 -2.9108 28 1 2.2504 1.8661 2.0037 29 1 0.9873 4.2060 3.0531 30 1 2.7000 3.7419 2.8968 31 1 2.7079 5.7635 1.1777 32 1 2.9443 6.0113 2.9166 33 1 1.2780 7.5645 1.7132 34 1 0.7512 6.8170 3.2297 35 1 1.0070 5.8065 -0.1495 36 1 -0.7498 5.6034 -0.3742 37 1 0.0490 3.3749 -0.3666 38 1 -0.5173 3.6139 1.2973 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000083425684.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:52:24 Heat of formation + Delta-G solvation = -63.243684 kcal Electronic energy + Delta-G solvation = -16882.811017 eV Core-core repulsion = 14338.499358 eV Total energy + Delta-G solvation = -2544.311659 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.24851 -36.48654 -34.01462 -32.38159 -31.49493 -29.80509 -26.68760 -25.80460 -24.26791 -22.54843 -20.55196 -19.75840 -19.28961 -16.58885 -16.41033 -16.01474 -15.01173 -14.73966 -14.43298 -13.67458 -13.34519 -12.93995 -12.82098 -12.50473 -12.14657 -11.96187 -11.45403 -11.31149 -11.17657 -11.07984 -10.72276 -10.68669 -10.40749 -10.23186 -10.07505 -9.91610 -9.55618 -9.42286 -9.23396 -8.97359 -8.37118 -7.21815 -5.99518 -4.12654 3.26260 3.31885 3.33939 4.03554 4.38317 4.88188 5.04839 5.12919 5.25370 5.29939 5.45672 5.57075 5.68773 5.81477 5.90951 6.02405 6.17764 6.26810 6.29901 6.42056 6.48534 6.52938 6.65464 6.73946 6.77712 6.99552 7.15627 7.20209 7.48329 7.59676 7.61922 7.78483 8.11100 8.19000 8.36723 8.70397 9.01190 9.54852 11.00239 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.026577 B = 0.008328 C = 0.007043 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1053.305527 B = 3361.503251 C = 3974.643329 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.106 4.106 3 C 0.215 3.785 4 H 0.032 0.968 5 C -0.545 4.545 6 H 0.051 0.949 7 C 0.067 3.933 8 N -0.885 5.885 9 Si 0.888 3.112 10 H -0.277 1.277 11 H -0.287 1.287 12 H -0.279 1.279 13 N -0.687 5.687 14 C 0.094 3.906 15 H 0.042 0.958 16 C -0.116 4.116 17 C -0.153 4.153 18 C 0.067 3.933 19 O -0.387 6.387 20 C 0.067 3.933 21 C -0.133 4.133 22 H 0.036 0.964 23 H 0.023 0.977 24 H 0.047 0.953 25 H 0.029 0.971 26 H 0.089 0.911 27 H 0.262 0.738 28 H 0.327 0.673 29 H 0.068 0.932 30 H 0.062 0.938 31 H 0.065 0.935 32 H 0.069 0.931 33 H 0.044 0.956 34 H 0.081 0.919 35 H 0.048 0.952 36 H 0.080 0.920 37 H 0.069 0.931 38 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.841 8.586 5.853 11.078 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.145 4.145 3 C 0.107 3.893 4 H 0.050 0.950 5 C -0.584 4.584 6 H 0.070 0.930 7 C -0.135 4.135 8 N -0.523 5.523 9 Si 0.715 3.285 10 H -0.203 1.203 11 H -0.212 1.212 12 H -0.205 1.205 13 N -0.317 5.317 14 C -0.016 4.016 15 H 0.060 0.940 16 C -0.154 4.154 17 C -0.191 4.191 18 C -0.010 4.010 19 O -0.306 6.306 20 C -0.010 4.010 21 C -0.171 4.171 22 H 0.055 0.945 23 H 0.042 0.958 24 H 0.066 0.934 25 H 0.048 0.952 26 H 0.107 0.893 27 H 0.072 0.928 28 H 0.143 0.857 29 H 0.086 0.914 30 H 0.081 0.919 31 H 0.084 0.916 32 H 0.087 0.913 33 H 0.062 0.938 34 H 0.100 0.900 35 H 0.067 0.933 36 H 0.098 0.902 37 H 0.088 0.912 38 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -4.673 8.394 5.620 11.130 hybrid contribution 2.469 0.108 -0.363 2.498 sum -2.204 8.501 5.257 10.236 Atomic orbital electron populations 1.21685 0.98988 0.98194 1.00387 1.21496 0.92087 0.99337 1.01581 1.19180 0.92426 0.91088 0.86560 0.95044 1.21847 0.92806 1.37895 1.05831 0.93042 1.24935 0.97871 0.95048 0.95682 1.69868 1.34941 1.37932 1.09581 0.86737 0.86216 0.78125 0.77375 1.20305 1.21217 1.20477 1.61017 1.56120 1.05225 1.09344 1.20349 0.96179 0.90147 0.94931 0.93976 1.21505 1.01434 0.94054 0.98400 1.21913 0.97946 0.96510 1.02778 1.22871 0.86255 0.94673 0.97169 1.87412 1.32134 1.74781 1.36318 1.22367 1.00669 0.92396 0.85614 1.21082 0.98763 0.94870 1.02370 0.94522 0.95763 0.93420 0.95178 0.89291 0.92847 0.85653 0.91365 0.91938 0.91643 0.91253 0.93803 0.90030 0.93333 0.90196 0.91226 0.91186 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.81 9.73 37.16 0.36 -2.45 16 2 C -0.11 -2.56 5.44 -26.73 -0.15 -2.71 16 3 C 0.22 5.28 1.73 -68.86 -0.12 5.16 16 4 H 0.03 0.86 7.10 -51.93 -0.37 0.49 16 5 C -0.54 -14.57 8.26 -34.44 -0.28 -14.86 16 6 H 0.05 1.37 7.74 -52.49 -0.41 0.96 16 7 C 0.07 1.83 5.30 -17.82 -0.09 1.74 16 8 N -0.88 -24.94 11.30 55.43 0.63 -24.32 16 9 Si 0.89 21.08 29.54 -169.99 -5.02 16.06 16 10 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 11 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 12 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 13 N -0.69 -14.32 5.51 -103.67 -0.57 -14.89 16 14 C 0.09 1.74 1.90 -70.28 -0.13 1.61 16 15 H 0.04 0.89 7.01 -51.93 -0.36 0.53 16 16 C -0.12 -1.80 5.06 -27.29 -0.14 -1.93 16 17 C -0.15 -2.03 5.32 -27.50 -0.15 -2.18 16 18 C 0.07 0.83 6.67 37.58 0.25 1.08 16 19 O -0.39 -5.80 10.17 -33.70 -0.34 -6.14 16 20 C 0.07 1.00 6.38 37.74 0.24 1.24 16 21 C -0.13 -2.29 4.94 -29.34 -0.14 -2.43 16 22 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 23 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 24 H 0.05 0.95 7.87 -51.93 -0.41 0.54 16 25 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 26 H 0.09 2.39 5.97 -51.93 -0.31 2.08 16 27 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 28 H 0.33 6.78 7.69 -39.29 -0.30 6.48 16 29 H 0.07 1.05 7.82 -51.93 -0.41 0.65 16 30 H 0.06 0.97 7.68 -51.93 -0.40 0.57 16 31 H 0.06 0.93 6.83 -51.93 -0.35 0.58 16 32 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.04 0.49 8.14 -51.93 -0.42 0.06 16 34 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 35 H 0.05 0.71 6.98 -51.93 -0.36 0.34 16 36 H 0.08 1.07 8.14 -51.93 -0.42 0.64 16 37 H 0.07 1.31 7.30 -51.93 -0.38 0.93 16 38 H 0.07 1.24 8.13 -51.93 -0.42 0.82 16 LS Contribution 291.99 15.07 4.40 4.40 Total: -1.00 -27.60 291.99 -7.84 -35.44 By element: Atomic # 1 Polarization: 11.77 SS G_CDS: -6.58 Total: 5.19 kcal Atomic # 6 Polarization: -15.39 SS G_CDS: -0.35 Total: -15.74 kcal Atomic # 7 Polarization: -39.26 SS G_CDS: 0.05 Total: -39.21 kcal Atomic # 8 Polarization: -5.80 SS G_CDS: -0.34 Total: -6.14 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.06 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -27.60 -7.84 -35.44 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083425684.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.800 kcal (2) G-P(sol) polarization free energy of solvation -27.603 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.403 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.840 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.444 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.244 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds