Wall clock time and date at job start Sun Mar 29 2020 21:52:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.46727 * 2 1 4 4 H 1.08993 * 109.47665 * 303.98913 * 3 2 1 5 5 C 1.50699 * 109.47037 * 183.98653 * 3 2 1 6 6 H 1.07998 * 120.00194 * 240.00440 * 5 3 2 7 7 C 1.37883 * 119.99914 * 60.00542 * 5 3 2 8 8 N 1.31515 * 119.99715 * 359.97438 * 7 5 3 9 9 Si 1.86799 * 120.00229 * 180.02562 * 7 5 3 10 10 H 1.48498 * 109.47367 * 59.99575 * 9 7 5 11 11 H 1.48498 * 109.47046 * 180.02562 * 9 7 5 12 12 H 1.48505 * 109.46580 * 300.00006 * 9 7 5 13 13 N 1.46901 * 109.46978 * 63.99257 * 3 2 1 14 14 C 1.46898 * 111.00020 * 204.84842 * 13 3 2 15 15 H 1.09000 * 108.96032 * 328.21459 * 14 13 3 16 16 C 1.54211 * 108.97663 * 209.49928 * 14 13 3 17 17 C 1.50619 * 109.06116 * 161.82508 * 16 14 13 18 18 C 1.53814 * 112.46983 * 90.32882 * 17 16 14 19 19 O 1.43988 * 113.41158 * 317.88770 * 18 17 16 20 20 C 1.40327 * 116.57877 * 317.88824 * 19 18 17 21 21 C 1.46279 * 108.97780 * 87.02132 * 14 13 3 22 22 H 1.08999 * 109.47740 * 54.86518 * 1 2 3 23 23 H 1.09005 * 109.47037 * 174.86880 * 1 2 3 24 24 H 1.08997 * 109.47103 * 294.85883 * 1 2 3 25 25 H 1.09000 * 109.47372 * 120.00365 * 2 1 3 26 26 H 1.08999 * 109.46878 * 240.00749 * 2 1 3 27 27 H 0.96998 * 119.99671 * 179.97438 * 8 7 5 28 28 H 1.00899 * 111.00123 * 80.88848 * 13 3 2 29 29 H 1.08994 * 109.53889 * 281.70168 * 16 14 13 30 30 H 1.09002 * 109.53811 * 41.94900 * 16 14 13 31 31 H 1.09001 * 108.88757 * 329.55282 * 17 16 14 32 32 H 1.09006 * 108.88140 * 211.09962 * 17 16 14 33 33 H 1.08993 * 108.69845 * 196.86241 * 18 17 16 34 34 H 1.09006 * 108.59247 * 78.82634 * 18 17 16 35 35 H 1.09002 * 109.60004 * 335.27522 * 20 19 18 36 36 H 1.08997 * 109.59899 * 214.80744 * 20 19 18 37 37 H 1.09000 * 108.93957 * 302.76336 * 21 14 13 38 38 H 1.09002 * 108.93943 * 61.45534 * 21 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6194 1.9766 -0.8520 5 6 3.5436 1.4438 -0.0988 6 1 4.1359 1.8929 0.6847 7 6 4.1634 0.8715 -1.1895 8 7 3.4421 0.3242 -2.1433 9 14 6.0273 0.8723 -1.3117 10 1 6.5999 0.1444 -0.1509 11 1 6.4412 0.2018 -2.5703 12 1 6.5227 2.2723 -1.3112 13 7 1.6305 2.1066 1.2448 14 6 1.5579 3.5628 1.0654 15 1 2.3061 3.8671 0.3334 16 6 1.8669 4.2498 2.4110 17 6 2.2333 5.6883 2.1561 18 6 1.0108 6.6212 2.1893 19 8 -0.1424 6.0770 1.5206 20 6 0.0890 5.4265 0.2989 21 6 0.2300 3.9146 0.5629 22 1 -0.3634 0.5914 -0.8404 23 1 -0.3633 -1.0236 -0.0919 24 1 -0.3633 0.4320 0.9324 25 1 1.8934 -0.5139 0.8899 26 1 1.8933 -0.5137 -0.8901 27 1 3.8780 -0.0781 -2.9108 28 1 2.2504 1.8661 2.0037 29 1 0.9873 4.2060 3.0531 30 1 2.7000 3.7419 2.8968 31 1 2.7079 5.7635 1.1777 32 1 2.9443 6.0113 2.9166 33 1 1.2780 7.5645 1.7132 34 1 0.7512 6.8170 3.2297 35 1 1.0070 5.8065 -0.1495 36 1 -0.7498 5.6034 -0.3742 37 1 0.0490 3.3749 -0.3666 38 1 -0.5173 3.6139 1.2973 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000083425684.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:52:24 Heat of formation + Delta-G solvation = -80.518208 kcal Electronic energy + Delta-G solvation = -16883.560097 eV Core-core repulsion = 14338.499358 eV Total energy + Delta-G solvation = -2545.060738 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.52618 -38.09495 -35.65112 -33.85487 -33.22892 -31.43316 -28.41922 -27.14959 -25.75987 -24.37119 -21.87311 -21.20530 -21.03702 -18.62504 -17.65584 -17.24300 -16.73399 -16.14331 -15.90723 -15.43789 -14.81209 -14.60323 -14.27412 -13.99137 -13.65215 -13.26601 -13.19725 -13.07730 -13.02286 -12.56327 -12.39918 -12.28677 -11.94100 -11.82310 -11.51971 -11.37825 -11.33410 -11.21830 -10.89950 -10.45942 -10.36714 -9.03071 -8.05700 -6.28256 1.37076 1.37880 1.45391 2.38588 2.95192 3.13355 3.56075 3.78937 3.96282 4.16235 4.19247 4.41022 4.48546 4.60053 4.64023 4.71141 4.73006 4.76544 4.85331 4.94660 5.07051 5.11694 5.18441 5.21504 5.27697 5.37561 5.42331 5.46406 5.57195 5.67065 5.78322 6.11658 6.21532 6.41024 6.48996 6.85457 7.03894 7.43253 8.90336 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.026577 B = 0.008328 C = 0.007043 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1053.305527 B = 3361.503251 C = 3974.643329 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.103 4.103 3 C 0.225 3.775 4 H -0.002 1.002 5 C -0.559 4.559 6 H 0.049 0.951 7 C 0.019 3.981 8 N -0.911 5.911 9 Si 0.949 3.051 10 H -0.272 1.272 11 H -0.284 1.284 12 H -0.275 1.275 13 N -0.681 5.681 14 C 0.096 3.904 15 H 0.011 0.989 16 C -0.108 4.108 17 C -0.150 4.150 18 C 0.062 3.938 19 O -0.398 6.398 20 C 0.076 3.924 21 C -0.127 4.127 22 H 0.029 0.971 23 H 0.043 0.957 24 H 0.056 0.944 25 H 0.027 0.973 26 H 0.060 0.940 27 H 0.262 0.738 28 H 0.328 0.672 29 H 0.073 0.927 30 H 0.061 0.939 31 H 0.051 0.949 32 H 0.094 0.906 33 H 0.062 0.938 34 H 0.103 0.897 35 H 0.049 0.951 36 H 0.096 0.904 37 H 0.046 0.954 38 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.661 9.709 7.095 12.571 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.142 4.142 3 C 0.116 3.884 4 H 0.016 0.984 5 C -0.598 4.598 6 H 0.067 0.933 7 C -0.181 4.181 8 N -0.550 5.550 9 Si 0.775 3.225 10 H -0.197 1.197 11 H -0.209 1.209 12 H -0.200 1.200 13 N -0.310 5.310 14 C -0.014 4.014 15 H 0.029 0.971 16 C -0.146 4.146 17 C -0.188 4.188 18 C -0.014 4.014 19 O -0.318 6.318 20 C -0.002 4.002 21 C -0.165 4.165 22 H 0.048 0.952 23 H 0.062 0.938 24 H 0.075 0.925 25 H 0.046 0.954 26 H 0.078 0.922 27 H 0.071 0.929 28 H 0.145 0.855 29 H 0.092 0.908 30 H 0.080 0.920 31 H 0.070 0.930 32 H 0.113 0.887 33 H 0.080 0.920 34 H 0.121 0.879 35 H 0.067 0.933 36 H 0.114 0.886 37 H 0.064 0.936 38 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -4.497 9.530 6.878 12.584 hybrid contribution 2.402 -0.229 -0.727 2.520 sum -2.096 9.301 6.151 11.346 Atomic orbital electron populations 1.21535 0.96427 0.99436 1.00555 1.21370 0.94366 0.98571 0.99912 1.18916 0.91259 0.91277 0.86922 0.98370 1.22151 0.94093 1.37700 1.05839 0.93326 1.25675 1.02136 0.94828 0.95457 1.70003 1.36521 1.38512 1.09968 0.85757 0.81103 0.78196 0.77445 1.19715 1.20890 1.20029 1.60977 1.55516 1.06782 1.07718 1.20428 0.96003 0.88790 0.96221 0.97072 1.21424 1.01618 0.95322 0.96216 1.21887 0.98980 0.95128 1.02845 1.23082 0.85127 0.94791 0.98364 1.87398 1.33516 1.74680 1.36169 1.22263 1.01437 0.90375 0.86146 1.21019 0.97743 0.96823 1.00953 0.95159 0.93794 0.92501 0.95448 0.92198 0.92903 0.85538 0.90828 0.92005 0.93031 0.88742 0.92010 0.87911 0.93287 0.88593 0.93550 0.91432 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.05 9.73 71.98 0.70 -4.35 16 2 C -0.10 -5.06 5.44 30.59 0.17 -4.89 16 3 C 0.23 11.32 1.73 44.17 0.08 11.39 16 4 H 0.00 -0.09 7.10 -2.39 -0.02 -0.11 16 5 C -0.56 -30.40 8.26 25.60 0.21 -30.19 16 6 H 0.05 2.61 7.74 -2.91 -0.02 2.59 16 7 C 0.02 1.05 5.30 84.66 0.45 1.50 16 8 N -0.91 -52.41 11.30 21.45 0.24 -52.17 16 9 Si 0.95 43.43 29.54 68.60 2.03 45.46 16 10 H -0.27 -12.13 7.11 99.48 0.71 -11.43 16 11 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 12 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 13 N -0.68 -28.61 5.51 -481.92 -2.66 -31.27 16 14 C 0.10 3.55 1.90 43.26 0.08 3.63 16 15 H 0.01 0.49 7.01 -2.39 -0.02 0.47 16 16 C -0.11 -3.19 5.06 30.23 0.15 -3.04 16 17 C -0.15 -3.65 5.32 30.10 0.16 -3.49 16 18 C 0.06 1.36 6.67 72.26 0.48 1.84 16 19 O -0.40 -11.02 10.17 -143.50 -1.46 -12.48 16 20 C 0.08 2.16 6.38 72.36 0.46 2.62 16 21 C -0.13 -4.39 4.94 28.90 0.14 -4.25 16 22 H 0.03 1.26 8.14 -2.39 -0.02 1.24 16 23 H 0.04 1.62 8.14 -2.38 -0.02 1.60 16 24 H 0.06 2.22 7.87 -2.39 -0.02 2.20 16 25 H 0.03 1.31 8.14 -2.39 -0.02 1.29 16 26 H 0.06 3.29 5.97 -2.39 -0.01 3.28 16 27 H 0.26 14.38 8.31 -92.71 -0.77 13.61 16 28 H 0.33 13.59 7.69 -89.69 -0.69 12.90 16 29 H 0.07 2.11 7.82 -2.39 -0.02 2.10 16 30 H 0.06 1.83 7.68 -2.39 -0.02 1.81 16 31 H 0.05 1.40 6.83 -2.39 -0.02 1.39 16 32 H 0.09 1.85 8.14 -2.38 -0.02 1.83 16 33 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 34 H 0.10 1.84 8.14 -2.38 -0.02 1.82 16 35 H 0.05 1.39 6.98 -2.39 -0.02 1.37 16 36 H 0.10 2.43 8.14 -2.39 -0.02 2.41 16 37 H 0.05 1.79 7.30 -2.39 -0.02 1.78 16 38 H 0.07 2.35 8.13 -2.39 -0.02 2.33 16 Total: -1.00 -59.27 291.99 1.56 -57.71 By element: Atomic # 1 Polarization: 21.64 SS G_CDS: 0.33 Total: 21.97 kcal Atomic # 6 Polarization: -32.31 SS G_CDS: 3.08 Total: -29.22 kcal Atomic # 7 Polarization: -81.02 SS G_CDS: -2.41 Total: -83.44 kcal Atomic # 8 Polarization: -11.02 SS G_CDS: -1.46 Total: -12.48 kcal Atomic # 14 Polarization: 43.43 SS G_CDS: 2.03 Total: 45.46 kcal Total: -59.27 1.56 -57.71 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083425684.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.808 kcal (2) G-P(sol) polarization free energy of solvation -59.275 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.083 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.565 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.710 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.518 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds