Wall clock time and date at job start Sun Mar 29 2020 21:52:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53000 * 109.47225 * 2 1 4 4 H 1.08996 * 109.47000 * 54.48313 * 3 2 1 5 5 C 1.50699 * 109.47133 * 174.48417 * 3 2 1 6 6 H 1.07999 * 120.00163 * 119.99657 * 5 3 2 7 7 C 1.37882 * 119.99843 * 300.00249 * 5 3 2 8 8 N 1.31510 * 119.99833 * 359.97438 * 7 5 3 9 9 Si 1.86803 * 119.99710 * 180.02562 * 7 5 3 10 10 H 1.48502 * 109.47434 * 59.99497 * 9 7 5 11 11 H 1.48500 * 109.46811 * 179.97438 * 9 7 5 12 12 H 1.48504 * 109.47015 * 299.99217 * 9 7 5 13 13 N 1.46898 * 109.47227 * 294.48267 * 3 2 1 14 14 C 1.46898 * 111.00131 * 153.12649 * 13 3 2 15 15 H 1.08994 * 109.63134 * 33.74059 * 14 13 3 16 16 C 1.50296 * 109.63501 * 154.14032 * 14 13 3 17 17 C 1.54354 * 113.09572 * 211.60944 * 16 14 13 18 18 C 1.54351 * 111.52802 * 319.30599 * 17 16 14 19 19 O 1.39966 * 112.56896 * 319.15598 * 18 17 16 20 20 C 1.44229 * 112.36826 * 97.12349 * 19 18 17 21 21 C 1.45986 * 112.10261 * 277.40749 * 20 19 18 22 22 H 1.09003 * 109.46577 * 60.78965 * 1 2 3 23 23 H 1.09001 * 109.46853 * 300.79370 * 1 2 3 24 24 H 1.08996 * 109.46853 * 180.78959 * 1 2 3 25 25 H 1.09003 * 109.47164 * 120.00209 * 2 1 3 26 26 H 1.09002 * 109.46731 * 240.00013 * 2 1 3 27 27 H 0.97001 * 119.99798 * 180.02562 * 8 7 5 28 28 H 1.00904 * 111.00110 * 29.16909 * 13 3 2 29 29 H 1.09003 * 108.78484 * 332.67876 * 16 14 13 30 30 H 1.09001 * 108.78279 * 90.88425 * 16 14 13 31 31 H 1.08996 * 109.17193 * 198.69096 * 17 16 14 32 32 H 1.09001 * 108.86468 * 79.71670 * 17 16 14 33 33 H 1.08999 * 108.86408 * 198.35568 * 18 17 16 34 34 H 1.09005 * 108.86582 * 79.95274 * 18 17 16 35 35 H 1.08996 * 108.95426 * 156.73223 * 20 19 18 36 36 H 1.08999 * 108.88083 * 38.03729 * 20 19 18 37 37 H 1.08993 * 109.03038 * 299.48681 * 21 20 19 38 38 H 1.09000 * 109.02445 * 180.64238 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5983 1.9840 0.8364 5 6 3.5409 1.4447 0.1366 6 1 4.1528 1.8868 -0.6357 7 6 4.1328 0.8820 1.2475 8 7 3.3877 0.3439 2.1881 9 14 5.9931 0.8853 1.4171 10 1 6.4877 2.2856 1.4174 11 1 6.3751 0.2256 2.6915 12 1 6.5954 0.1478 0.2775 13 7 1.6622 2.0955 -1.2604 14 6 1.5386 3.5486 -1.0841 15 1 2.2665 3.8915 -0.3489 16 6 1.7829 4.2391 -2.3965 17 6 2.4293 5.6317 -2.2369 18 6 1.8184 6.4071 -1.0503 19 8 0.4299 6.2521 -0.9651 20 6 0.0486 5.2304 -0.0212 21 6 0.1140 3.8931 -0.6030 22 1 -0.3632 0.5015 -0.8970 23 1 -0.3633 0.5261 0.8828 24 1 -0.3633 -1.0275 0.0142 25 1 1.8934 -0.5139 0.8900 26 1 1.8933 -0.5139 -0.8900 27 1 3.8041 -0.0516 2.9698 28 1 0.8096 1.7023 -1.6300 29 1 2.4371 3.6149 -3.0052 30 1 0.8309 4.3554 -2.9145 31 1 2.2778 6.2037 -3.1522 32 1 3.4989 5.5066 -2.0680 33 1 2.0484 7.4663 -1.1655 34 1 2.2703 6.0491 -0.1252 35 1 -0.9708 5.4211 0.3143 36 1 0.7181 5.2761 0.8377 37 1 -0.5698 3.8402 -1.4501 38 1 -0.1939 3.1641 0.1466 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000083425685.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:52:26 Heat of formation + Delta-G solvation = -59.406171 kcal Electronic energy + Delta-G solvation = -16977.001375 eV Core-core repulsion = 14432.856124 eV Total energy + Delta-G solvation = -2544.145252 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.38419 -36.53231 -33.91948 -32.41595 -31.66640 -29.78613 -26.87847 -25.85660 -23.95439 -22.54667 -21.18372 -19.74223 -19.24991 -16.32321 -16.27927 -15.96117 -14.91531 -14.77523 -14.26555 -14.05084 -13.63599 -12.92111 -12.85403 -12.53304 -12.42323 -11.86883 -11.76540 -11.23198 -11.04804 -10.84781 -10.65851 -10.61356 -10.57691 -10.25749 -10.03206 -9.94987 -9.67006 -9.45697 -9.32624 -9.04831 -8.34331 -7.19451 -5.96330 -4.00246 3.33439 3.37782 3.41268 4.09467 4.44634 4.99025 5.14306 5.27633 5.31905 5.34237 5.47041 5.53866 5.75835 5.82920 5.85020 6.03143 6.15140 6.15653 6.16769 6.26009 6.32377 6.40932 6.45837 6.54721 6.76641 6.82325 6.84806 7.09274 7.19574 7.46647 7.52902 7.79158 7.93533 8.34549 8.42194 8.79095 9.07935 9.64712 11.08872 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.024128 B = 0.009054 C = 0.007523 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1160.220190 B = 3091.867938 C = 3721.257851 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.127 4.127 3 C 0.219 3.781 4 H 0.002 0.998 5 C -0.492 4.492 6 H 0.060 0.940 7 C 0.055 3.945 8 N -0.897 5.897 9 Si 0.894 3.106 10 H -0.279 1.279 11 H -0.289 1.289 12 H -0.278 1.278 13 N -0.680 5.680 14 C 0.098 3.902 15 H 0.080 0.920 16 C -0.106 4.106 17 C -0.143 4.143 18 C 0.058 3.942 19 O -0.375 6.375 20 C 0.066 3.934 21 C -0.183 4.183 22 H 0.035 0.965 23 H 0.041 0.959 24 H 0.037 0.963 25 H 0.099 0.901 26 H 0.040 0.960 27 H 0.259 0.741 28 H 0.317 0.683 29 H 0.071 0.929 30 H 0.050 0.950 31 H 0.059 0.941 32 H 0.068 0.932 33 H 0.071 0.929 34 H 0.052 0.948 35 H 0.079 0.921 36 H 0.053 0.947 37 H 0.063 0.937 38 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.122 7.434 -4.499 10.087 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.166 4.166 3 C 0.112 3.888 4 H 0.020 0.980 5 C -0.531 4.531 6 H 0.078 0.922 7 C -0.146 4.146 8 N -0.537 5.537 9 Si 0.722 3.278 10 H -0.205 1.205 11 H -0.215 1.215 12 H -0.203 1.203 13 N -0.310 5.310 14 C -0.013 4.013 15 H 0.098 0.902 16 C -0.144 4.144 17 C -0.181 4.181 18 C -0.020 4.020 19 O -0.294 6.294 20 C -0.010 4.010 21 C -0.223 4.223 22 H 0.054 0.946 23 H 0.060 0.940 24 H 0.056 0.944 25 H 0.117 0.883 26 H 0.059 0.941 27 H 0.069 0.931 28 H 0.135 0.865 29 H 0.090 0.910 30 H 0.068 0.932 31 H 0.078 0.922 32 H 0.086 0.914 33 H 0.090 0.910 34 H 0.070 0.930 35 H 0.098 0.902 36 H 0.071 0.929 37 H 0.082 0.918 38 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -4.573 7.455 -4.654 9.907 hybrid contribution 0.324 -0.231 0.824 0.915 sum -4.249 7.225 -3.830 9.215 Atomic orbital electron populations 1.21888 0.99653 0.99579 0.99597 1.21789 0.91193 1.00553 1.03044 1.19156 0.95301 0.89837 0.84550 0.98015 1.21192 0.91333 1.36360 1.04183 0.92181 1.24956 0.98004 0.95707 0.95891 1.69860 1.34720 1.39543 1.09581 0.86631 0.85917 0.78119 0.77122 1.20464 1.21490 1.20316 1.60883 1.36821 1.01242 1.32030 1.21154 0.93510 0.90190 0.96466 0.90223 1.21317 1.00488 0.94386 0.98238 1.22516 1.00217 0.96637 0.98725 1.22322 0.82180 0.99195 0.98272 1.87703 1.21962 1.56088 1.63625 1.21473 1.00530 0.88084 0.90954 1.21959 1.00692 0.97641 1.01975 0.94586 0.93952 0.94435 0.88284 0.94114 0.93074 0.86511 0.90984 0.93166 0.92198 0.91373 0.91042 0.92984 0.90242 0.92915 0.91784 0.90937 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.86 9.74 37.16 0.36 -2.50 16 2 C -0.13 -2.97 5.35 -26.73 -0.14 -3.11 16 3 C 0.22 5.33 1.74 -68.87 -0.12 5.21 16 4 H 0.00 0.06 7.33 -51.93 -0.38 -0.32 16 5 C -0.49 -13.42 8.60 -34.44 -0.30 -13.72 16 6 H 0.06 1.68 7.81 -52.49 -0.41 1.27 16 7 C 0.05 1.50 5.29 -17.82 -0.09 1.41 16 8 N -0.90 -25.29 11.29 55.43 0.63 -24.66 16 9 Si 0.89 21.41 29.54 -169.99 -5.02 16.39 16 10 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 11 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 12 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 13 N -0.68 -14.20 5.93 -101.68 -0.60 -14.80 16 14 C 0.10 1.81 1.92 -68.40 -0.13 1.68 16 15 H 0.08 1.67 6.66 -51.93 -0.35 1.33 16 16 C -0.11 -1.75 5.17 -27.37 -0.14 -1.89 16 17 C -0.14 -2.05 6.26 -25.31 -0.16 -2.21 16 18 C 0.06 0.82 6.09 37.87 0.23 1.05 16 19 O -0.38 -5.78 10.35 -32.84 -0.34 -6.12 16 20 C 0.07 0.98 6.12 33.83 0.21 1.18 16 21 C -0.18 -2.96 4.81 -29.39 -0.14 -3.11 16 22 H 0.04 0.62 6.48 -51.93 -0.34 0.28 16 23 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 24 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 25 H 0.10 2.60 5.94 -51.93 -0.31 2.30 16 26 H 0.04 0.95 8.14 -51.93 -0.42 0.53 16 27 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 28 H 0.32 6.14 6.24 -39.29 -0.25 5.89 16 29 H 0.07 1.26 7.96 -51.93 -0.41 0.85 16 30 H 0.05 0.80 7.35 -51.93 -0.38 0.41 16 31 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 33 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 34 H 0.05 0.76 6.54 -51.93 -0.34 0.42 16 35 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 36 H 0.05 0.79 7.34 -51.93 -0.38 0.41 16 37 H 0.06 0.99 7.55 -51.93 -0.39 0.59 16 38 H 0.07 1.24 7.55 -51.93 -0.39 0.85 16 LS Contribution 289.58 15.07 4.36 4.36 Total: -1.00 -27.87 289.58 -7.82 -35.69 By element: Atomic # 1 Polarization: 11.56 SS G_CDS: -6.42 Total: 5.14 kcal Atomic # 6 Polarization: -15.58 SS G_CDS: -0.43 Total: -16.01 kcal Atomic # 7 Polarization: -39.49 SS G_CDS: 0.02 Total: -39.46 kcal Atomic # 8 Polarization: -5.78 SS G_CDS: -0.34 Total: -6.12 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -27.87 -7.82 -35.69 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083425685.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.715 kcal (2) G-P(sol) polarization free energy of solvation -27.870 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.585 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.822 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.691 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.406 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds