Wall clock time and date at job start Sun Mar 29 2020 21:52:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53000 * 109.47225 * 2 1 4 4 H 1.08996 * 109.47000 * 54.48313 * 3 2 1 5 5 C 1.50699 * 109.47133 * 174.48417 * 3 2 1 6 6 H 1.07999 * 120.00163 * 119.99657 * 5 3 2 7 7 C 1.37882 * 119.99843 * 300.00249 * 5 3 2 8 8 N 1.31510 * 119.99833 * 359.97438 * 7 5 3 9 9 Si 1.86803 * 119.99710 * 180.02562 * 7 5 3 10 10 H 1.48502 * 109.47434 * 59.99497 * 9 7 5 11 11 H 1.48500 * 109.46811 * 179.97438 * 9 7 5 12 12 H 1.48504 * 109.47015 * 299.99217 * 9 7 5 13 13 N 1.46898 * 109.47227 * 294.48267 * 3 2 1 14 14 C 1.46898 * 111.00131 * 153.12649 * 13 3 2 15 15 H 1.08994 * 109.63134 * 33.74059 * 14 13 3 16 16 C 1.50296 * 109.63501 * 154.14032 * 14 13 3 17 17 C 1.54354 * 113.09572 * 211.60944 * 16 14 13 18 18 C 1.54351 * 111.52802 * 319.30599 * 17 16 14 19 19 O 1.39966 * 112.56896 * 319.15598 * 18 17 16 20 20 C 1.44229 * 112.36826 * 97.12349 * 19 18 17 21 21 C 1.45986 * 112.10261 * 277.40749 * 20 19 18 22 22 H 1.09003 * 109.46577 * 60.78965 * 1 2 3 23 23 H 1.09001 * 109.46853 * 300.79370 * 1 2 3 24 24 H 1.08996 * 109.46853 * 180.78959 * 1 2 3 25 25 H 1.09003 * 109.47164 * 120.00209 * 2 1 3 26 26 H 1.09002 * 109.46731 * 240.00013 * 2 1 3 27 27 H 0.97001 * 119.99798 * 180.02562 * 8 7 5 28 28 H 1.00904 * 111.00110 * 29.16909 * 13 3 2 29 29 H 1.09003 * 108.78484 * 332.67876 * 16 14 13 30 30 H 1.09001 * 108.78279 * 90.88425 * 16 14 13 31 31 H 1.08996 * 109.17193 * 198.69096 * 17 16 14 32 32 H 1.09001 * 108.86468 * 79.71670 * 17 16 14 33 33 H 1.08999 * 108.86408 * 198.35568 * 18 17 16 34 34 H 1.09005 * 108.86582 * 79.95274 * 18 17 16 35 35 H 1.08996 * 108.95426 * 156.73223 * 20 19 18 36 36 H 1.08999 * 108.88083 * 38.03729 * 20 19 18 37 37 H 1.08993 * 109.03038 * 299.48681 * 21 20 19 38 38 H 1.09000 * 109.02445 * 180.64238 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5983 1.9840 0.8364 5 6 3.5409 1.4447 0.1366 6 1 4.1528 1.8868 -0.6357 7 6 4.1328 0.8820 1.2475 8 7 3.3877 0.3439 2.1881 9 14 5.9931 0.8853 1.4171 10 1 6.4877 2.2856 1.4174 11 1 6.3751 0.2256 2.6915 12 1 6.5954 0.1478 0.2775 13 7 1.6622 2.0955 -1.2604 14 6 1.5386 3.5486 -1.0841 15 1 2.2665 3.8915 -0.3489 16 6 1.7829 4.2391 -2.3965 17 6 2.4293 5.6317 -2.2369 18 6 1.8184 6.4071 -1.0503 19 8 0.4299 6.2521 -0.9651 20 6 0.0486 5.2304 -0.0212 21 6 0.1140 3.8931 -0.6030 22 1 -0.3632 0.5015 -0.8970 23 1 -0.3633 0.5261 0.8828 24 1 -0.3633 -1.0275 0.0142 25 1 1.8934 -0.5139 0.8900 26 1 1.8933 -0.5139 -0.8900 27 1 3.8041 -0.0516 2.9698 28 1 0.8096 1.7023 -1.6300 29 1 2.4371 3.6149 -3.0052 30 1 0.8309 4.3554 -2.9145 31 1 2.2778 6.2037 -3.1522 32 1 3.4989 5.5066 -2.0680 33 1 2.0484 7.4663 -1.1655 34 1 2.2703 6.0491 -0.1252 35 1 -0.9708 5.4211 0.3143 36 1 0.7181 5.2761 0.8377 37 1 -0.5698 3.8402 -1.4501 38 1 -0.1939 3.1641 0.1466 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000083425685.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:52:26 Heat of formation + Delta-G solvation = -77.012137 kcal Electronic energy + Delta-G solvation = -16977.764827 eV Core-core repulsion = 14432.856124 eV Total energy + Delta-G solvation = -2544.908704 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.67731 -38.16122 -35.55133 -33.88301 -33.39235 -31.35209 -28.62260 -27.32597 -25.44976 -24.27688 -22.45544 -21.52870 -20.72327 -18.31737 -17.57179 -17.33083 -16.64262 -16.18762 -15.78785 -15.59414 -15.19458 -14.71286 -14.09714 -14.03480 -13.91095 -13.49157 -13.27381 -12.99549 -12.76212 -12.55466 -12.35677 -12.05123 -11.90346 -11.89711 -11.67071 -11.53973 -11.44125 -11.06540 -10.92686 -10.52452 -10.42221 -8.93955 -8.05970 -6.17633 1.40773 1.41922 1.49596 2.43555 2.93606 3.18700 3.60075 3.72680 4.07937 4.13321 4.24141 4.27995 4.48070 4.50075 4.56620 4.57794 4.67555 4.69931 4.83103 4.85181 4.95680 5.06254 5.12506 5.16785 5.23313 5.26191 5.33957 5.42267 5.46253 5.64121 5.77736 5.92035 6.29448 6.38861 6.57580 6.96550 7.04606 7.51436 8.96548 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.024128 B = 0.009054 C = 0.007523 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1160.220190 B = 3091.867938 C = 3721.257851 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.123 4.123 3 C 0.228 3.772 4 H -0.027 1.027 5 C -0.511 4.511 6 H 0.046 0.954 7 C 0.011 3.989 8 N -0.919 5.919 9 Si 0.951 3.049 10 H -0.274 1.274 11 H -0.284 1.284 12 H -0.274 1.274 13 N -0.683 5.683 14 C 0.098 3.902 15 H 0.048 0.952 16 C -0.102 4.102 17 C -0.140 4.140 18 C 0.055 3.945 19 O -0.380 6.380 20 C 0.066 3.934 21 C -0.173 4.173 22 H 0.056 0.944 23 H 0.037 0.963 24 H 0.056 0.944 25 H 0.067 0.933 26 H 0.034 0.966 27 H 0.260 0.740 28 H 0.327 0.673 29 H 0.058 0.942 30 H 0.060 0.940 31 H 0.080 0.920 32 H 0.064 0.936 33 H 0.097 0.903 34 H 0.040 0.960 35 H 0.104 0.896 36 H 0.044 0.956 37 H 0.078 0.922 38 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.677 8.308 -5.360 11.401 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.162 4.162 3 C 0.120 3.880 4 H -0.010 1.010 5 C -0.549 4.549 6 H 0.065 0.935 7 C -0.188 4.188 8 N -0.559 5.559 9 Si 0.778 3.222 10 H -0.200 1.200 11 H -0.209 1.209 12 H -0.200 1.200 13 N -0.314 5.314 14 C -0.013 4.013 15 H 0.066 0.934 16 C -0.140 4.140 17 C -0.179 4.179 18 C -0.023 4.023 19 O -0.298 6.298 20 C -0.010 4.010 21 C -0.212 4.212 22 H 0.075 0.925 23 H 0.056 0.944 24 H 0.075 0.925 25 H 0.085 0.915 26 H 0.053 0.947 27 H 0.069 0.931 28 H 0.146 0.854 29 H 0.077 0.923 30 H 0.079 0.921 31 H 0.099 0.901 32 H 0.083 0.917 33 H 0.115 0.885 34 H 0.058 0.942 35 H 0.122 0.878 36 H 0.063 0.937 37 H 0.096 0.904 38 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -5.136 8.340 -5.528 11.247 hybrid contribution 0.496 -0.490 1.072 1.278 sum -4.640 7.851 -4.457 10.150 Atomic orbital electron populations 1.21747 0.96227 1.01147 1.00420 1.21624 0.94283 0.99243 1.01076 1.18886 0.93717 0.90419 0.84968 1.00990 1.21455 0.93011 1.36420 1.04054 0.93523 1.25645 1.02038 0.95425 0.95648 1.69986 1.36167 1.39922 1.09835 0.85716 0.81124 0.78230 0.77167 1.19970 1.20937 1.19988 1.60784 1.37683 1.02680 1.30210 1.21145 0.94371 0.88751 0.97004 0.93360 1.21247 1.00915 0.95209 0.96618 1.22511 0.99829 0.95590 0.99923 1.22430 0.81638 1.00630 0.97552 1.87696 1.22479 1.55960 1.63684 1.21495 1.01800 0.87261 0.90491 1.21836 0.98979 0.98277 1.02149 0.92475 0.94372 0.92469 0.91453 0.94744 0.93119 0.85387 0.92333 0.92094 0.90100 0.91707 0.88465 0.94155 0.87770 0.93730 0.90365 0.92068 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.11 9.74 71.98 0.70 -4.41 16 2 C -0.12 -5.82 5.35 30.60 0.16 -5.65 16 3 C 0.23 11.36 1.74 44.17 0.08 11.43 16 4 H -0.03 -1.51 7.33 -2.39 -0.02 -1.52 16 5 C -0.51 -28.52 8.60 25.60 0.22 -28.29 16 6 H 0.05 2.66 7.81 -2.91 -0.02 2.64 16 7 C 0.01 0.59 5.29 84.66 0.45 1.03 16 8 N -0.92 -52.78 11.29 21.45 0.24 -52.54 16 9 Si 0.95 44.32 29.54 68.60 2.03 46.34 16 10 H -0.27 -12.49 7.11 99.48 0.71 -11.78 16 11 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 12 H -0.27 -12.58 7.11 99.48 0.71 -11.87 16 13 N -0.68 -28.57 5.93 -475.61 -2.82 -31.39 16 14 C 0.10 3.60 1.92 44.47 0.09 3.69 16 15 H 0.05 2.08 6.66 -2.39 -0.02 2.07 16 16 C -0.10 -3.23 5.17 30.18 0.16 -3.08 16 17 C -0.14 -3.80 6.26 31.51 0.20 -3.61 16 18 C 0.05 1.46 6.09 72.44 0.44 1.90 16 19 O -0.38 -10.83 10.35 -140.42 -1.45 -12.29 16 20 C 0.07 1.85 6.12 69.83 0.43 2.28 16 21 C -0.17 -5.40 4.81 28.87 0.14 -5.26 16 22 H 0.06 1.86 6.48 -2.39 -0.02 1.84 16 23 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 24 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 25 H 0.07 3.62 5.94 -2.39 -0.01 3.60 16 26 H 0.03 1.62 8.14 -2.39 -0.02 1.60 16 27 H 0.26 14.29 8.31 -92.71 -0.77 13.52 16 28 H 0.33 12.35 6.24 -89.69 -0.56 11.79 16 29 H 0.06 2.01 7.96 -2.39 -0.02 1.99 16 30 H 0.06 1.80 7.35 -2.39 -0.02 1.78 16 31 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 32 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 33 H 0.10 2.09 8.14 -2.39 -0.02 2.07 16 34 H 0.04 1.16 6.54 -2.38 -0.02 1.14 16 35 H 0.10 2.42 8.14 -2.39 -0.02 2.40 16 36 H 0.04 1.32 7.34 -2.39 -0.02 1.30 16 37 H 0.08 2.22 7.55 -2.39 -0.02 2.20 16 38 H 0.06 2.05 7.55 -2.39 -0.02 2.04 16 Total: -1.00 -59.86 289.58 1.51 -58.35 By element: Atomic # 1 Polarization: 21.04 SS G_CDS: 0.46 Total: 21.50 kcal Atomic # 6 Polarization: -33.03 SS G_CDS: 3.06 Total: -29.97 kcal Atomic # 7 Polarization: -81.35 SS G_CDS: -2.58 Total: -83.93 kcal Atomic # 8 Polarization: -10.83 SS G_CDS: -1.45 Total: -12.29 kcal Atomic # 14 Polarization: 44.32 SS G_CDS: 2.03 Total: 46.34 kcal Total: -59.86 1.51 -58.35 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083425685.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.666 kcal (2) G-P(sol) polarization free energy of solvation -59.858 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.523 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.511 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.346 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.012 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds