Wall clock time and date at job start Sun Mar 29 2020 21:52:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53008 * 109.47104 * 2 1 4 4 H 1.09002 * 109.46869 * 305.65071 * 3 2 1 5 5 C 1.50698 * 109.47131 * 185.65148 * 3 2 1 6 6 H 1.08003 * 119.99884 * 239.99585 * 5 3 2 7 7 C 1.37877 * 119.99900 * 59.99835 * 5 3 2 8 8 N 1.31504 * 120.00247 * 359.97438 * 7 5 3 9 9 Si 1.86805 * 119.99548 * 180.02562 * 7 5 3 10 10 H 1.48493 * 109.47237 * 359.97438 * 9 7 5 11 11 H 1.48499 * 109.47250 * 119.99958 * 9 7 5 12 12 H 1.48499 * 109.46723 * 239.99748 * 9 7 5 13 13 N 1.46898 * 109.47164 * 65.64526 * 3 2 1 14 14 C 1.46899 * 111.00039 * 215.72038 * 13 3 2 15 15 H 1.08996 * 108.94331 * 31.00473 * 14 13 3 16 16 C 1.46282 * 108.96155 * 149.77272 * 14 13 3 17 17 C 1.54200 * 112.07574 * 181.55859 * 16 14 13 18 18 C 1.50413 * 108.77049 * 282.18921 * 17 16 14 19 19 O 1.44182 * 112.77535 * 92.57453 * 18 17 16 20 20 C 1.44188 * 116.92736 * 318.47945 * 19 18 17 21 21 C 1.50477 * 112.70189 * 318.46543 * 20 19 18 22 22 H 1.08998 * 109.47648 * 292.62603 * 1 2 3 23 23 H 1.09000 * 109.47148 * 52.63049 * 1 2 3 24 24 H 1.09004 * 109.47070 * 172.62913 * 1 2 3 25 25 H 1.09000 * 109.47230 * 119.99002 * 2 1 3 26 26 H 1.08999 * 109.47348 * 239.99970 * 2 1 3 27 27 H 0.97002 * 120.00011 * 180.02562 * 8 7 5 28 28 H 1.00893 * 111.00125 * 339.67904 * 13 3 2 29 29 H 1.09002 * 108.95905 * 302.22729 * 16 14 13 30 30 H 1.08997 * 108.96185 * 60.97788 * 16 14 13 31 31 H 1.09004 * 109.58655 * 41.97216 * 17 16 14 32 32 H 1.08994 * 109.58817 * 162.25535 * 17 16 14 33 33 H 1.09001 * 108.82210 * 213.42382 * 18 17 16 34 34 H 1.09001 * 108.81902 * 331.72855 * 18 17 16 35 35 H 1.08999 * 108.81948 * 79.32620 * 20 19 18 36 36 H 1.09005 * 108.81870 * 197.73173 * 20 19 18 37 37 H 1.08997 * 109.66686 * 332.86950 * 21 20 19 38 38 H 1.09003 * 109.53429 * 212.41764 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.5963 1.9848 -0.8351 5 6 3.5404 1.4449 -0.1399 6 1 4.1540 1.8866 0.6314 7 6 4.1299 0.8831 -1.2526 8 7 3.3828 0.3449 -2.1915 9 14 5.9899 0.8854 -1.4256 10 1 6.5963 1.5462 -0.2420 11 1 6.4802 -0.5133 -1.5176 12 1 6.3717 1.6257 -2.6550 13 7 1.6647 2.0946 1.2617 14 6 1.3367 3.5101 1.0456 15 1 0.9159 3.6273 0.0470 16 6 0.3398 3.9232 2.0332 17 6 -0.0863 5.3934 1.8465 18 6 0.9856 6.2837 2.4128 19 8 1.9555 6.6871 1.4252 20 6 2.3948 5.6797 0.4918 21 6 2.6295 4.3449 1.1457 22 1 -0.3634 0.3953 0.9485 23 1 -0.3633 0.6237 -0.8167 24 1 -0.3633 -1.0192 -0.1318 25 1 1.8933 -0.5137 0.8901 26 1 1.8933 -0.5138 -0.8900 27 1 3.7976 -0.0506 -2.9741 28 1 0.8993 1.6098 1.7056 29 1 -0.5387 3.2850 1.9379 30 1 0.7591 3.8015 3.0319 31 1 -0.2138 5.6049 0.7848 32 1 -1.0259 5.5707 2.3697 33 1 0.5179 7.1750 2.8309 34 1 1.4992 5.7504 3.2128 35 1 1.6371 5.5642 -0.2832 36 1 3.3238 6.0112 0.0280 37 1 2.8901 4.4907 2.1940 38 1 3.4402 3.8260 0.6342 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000083425686.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:52:28 Heat of formation + Delta-G solvation = -57.422895 kcal Electronic energy + Delta-G solvation = -16941.397836 eV Core-core repulsion = 14397.338586 eV Total energy + Delta-G solvation = -2544.059250 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.26039 -36.47969 -34.11680 -32.18517 -31.66217 -29.63949 -27.23527 -25.62148 -24.29527 -22.55993 -20.48603 -19.83905 -19.41730 -16.53303 -16.25281 -16.05927 -14.83693 -14.63494 -14.25266 -13.97134 -13.30400 -13.07630 -12.82970 -12.55511 -12.35707 -12.09918 -11.76343 -11.22735 -11.09681 -10.95445 -10.84730 -10.67434 -10.46193 -10.25940 -10.15061 -9.82307 -9.65453 -9.44425 -9.20185 -9.02368 -8.33072 -7.23764 -5.96207 -3.99505 3.31268 3.39731 3.44602 4.06443 4.44553 4.83228 5.01203 5.13880 5.25817 5.32854 5.43177 5.67663 5.72175 5.90777 5.96596 6.00167 6.08661 6.11755 6.13704 6.20025 6.27686 6.38536 6.44231 6.47736 6.74375 6.80822 7.00249 7.05837 7.18296 7.47794 7.55044 7.77430 7.94248 8.33043 8.43874 8.75112 9.08463 9.65195 11.09048 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.025674 B = 0.008961 C = 0.007051 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1090.332073 B = 3123.866762 C = 3970.016370 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.132 4.132 3 C 0.218 3.782 4 H 0.007 0.993 5 C -0.487 4.487 6 H 0.064 0.936 7 C 0.053 3.947 8 N -0.897 5.897 9 Si 0.891 3.109 10 H -0.273 1.273 11 H -0.286 1.286 12 H -0.286 1.286 13 N -0.684 5.684 14 C 0.095 3.905 15 H 0.034 0.966 16 C -0.124 4.124 17 C -0.151 4.151 18 C 0.067 3.933 19 O -0.403 6.403 20 C 0.064 3.936 21 C -0.142 4.142 22 H 0.033 0.967 23 H 0.042 0.958 24 H 0.037 0.963 25 H 0.040 0.960 26 H 0.100 0.900 27 H 0.258 0.742 28 H 0.318 0.682 29 H 0.056 0.944 30 H 0.067 0.933 31 H 0.072 0.928 32 H 0.072 0.928 33 H 0.078 0.922 34 H 0.050 0.950 35 H 0.046 0.954 36 H 0.084 0.916 37 H 0.064 0.936 38 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.194 6.884 6.240 11.167 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.170 4.170 3 C 0.111 3.889 4 H 0.024 0.976 5 C -0.526 4.526 6 H 0.082 0.918 7 C -0.147 4.147 8 N -0.537 5.537 9 Si 0.720 3.280 10 H -0.197 1.197 11 H -0.212 1.212 12 H -0.213 1.213 13 N -0.316 5.316 14 C -0.015 4.015 15 H 0.052 0.948 16 C -0.162 4.162 17 C -0.189 4.189 18 C -0.010 4.010 19 O -0.323 6.323 20 C -0.012 4.012 21 C -0.180 4.180 22 H 0.052 0.948 23 H 0.061 0.939 24 H 0.056 0.944 25 H 0.059 0.941 26 H 0.118 0.882 27 H 0.068 0.932 28 H 0.136 0.864 29 H 0.075 0.925 30 H 0.086 0.914 31 H 0.091 0.909 32 H 0.090 0.910 33 H 0.096 0.904 34 H 0.068 0.932 35 H 0.064 0.936 36 H 0.102 0.898 37 H 0.083 0.917 38 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -5.449 7.079 6.236 10.894 hybrid contribution -0.046 -0.539 -0.667 0.859 sum -5.495 6.539 5.569 10.196 Atomic orbital electron populations 1.21876 0.99647 0.99733 0.99399 1.21873 0.91203 1.00840 1.03111 1.19286 0.95565 0.89690 0.84340 0.97568 1.21299 0.91294 1.35949 1.04067 0.91807 1.24979 0.97965 0.95763 0.95994 1.69875 1.34537 1.39671 1.09615 0.86540 0.85997 0.77597 0.77883 1.19737 1.21206 1.21270 1.60799 1.41833 1.00420 1.28507 1.20465 0.93553 0.90950 0.96575 0.94778 1.20936 0.98837 0.95455 1.00924 1.21884 0.98845 0.95697 1.02508 1.22204 0.89450 0.98447 0.90880 1.88183 1.60067 1.37916 1.46148 1.22382 0.99126 0.88806 0.90881 1.22013 1.00191 0.94220 1.01610 0.94801 0.93926 0.94391 0.94148 0.88181 0.93195 0.86443 0.92516 0.91388 0.90942 0.90951 0.90380 0.93194 0.93574 0.89779 0.91713 0.87812 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.85 9.66 37.15 0.36 -2.49 16 2 C -0.13 -3.05 5.27 -26.73 -0.14 -3.19 16 3 C 0.22 5.29 2.03 -68.86 -0.14 5.15 16 4 H 0.01 0.18 7.17 -51.93 -0.37 -0.19 16 5 C -0.49 -13.06 7.59 -34.44 -0.26 -13.32 16 6 H 0.06 1.74 7.08 -52.48 -0.37 1.37 16 7 C 0.05 1.45 5.29 -17.82 -0.09 1.35 16 8 N -0.90 -25.23 11.29 55.43 0.63 -24.60 16 9 Si 0.89 21.29 29.54 -169.99 -5.02 16.27 16 10 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 11 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 12 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 13 N -0.68 -14.08 6.14 -103.67 -0.64 -14.72 16 14 C 0.09 1.72 2.07 -70.27 -0.15 1.57 16 15 H 0.03 0.68 6.64 -51.93 -0.34 0.33 16 16 C -0.12 -1.80 4.50 -29.30 -0.13 -1.93 16 17 C -0.15 -1.91 5.61 -27.39 -0.15 -2.07 16 18 C 0.07 0.88 6.26 35.87 0.22 1.10 16 19 O -0.40 -6.45 10.88 -35.23 -0.38 -6.84 16 20 C 0.06 1.06 6.27 35.90 0.22 1.28 16 21 C -0.14 -2.58 5.17 -27.36 -0.14 -2.72 16 22 H 0.03 0.57 6.78 -51.93 -0.35 0.22 16 23 H 0.04 0.83 8.13 -51.93 -0.42 0.40 16 24 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 25 H 0.04 0.93 8.14 -51.93 -0.42 0.51 16 26 H 0.10 2.62 5.94 -51.93 -0.31 2.32 16 27 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 28 H 0.32 6.04 6.02 -39.30 -0.24 5.80 16 29 H 0.06 0.79 7.99 -51.93 -0.41 0.37 16 30 H 0.07 0.98 7.55 -51.93 -0.39 0.58 16 31 H 0.07 0.98 7.15 -51.93 -0.37 0.61 16 32 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 34 H 0.05 0.66 6.67 -51.93 -0.35 0.31 16 35 H 0.05 0.76 6.67 -51.93 -0.35 0.41 16 36 H 0.08 1.32 8.14 -51.93 -0.42 0.90 16 37 H 0.06 1.15 7.14 -51.93 -0.37 0.78 16 38 H 0.10 2.20 5.95 -51.93 -0.31 1.89 16 LS Contribution 284.78 15.07 4.29 4.29 Total: -1.00 -27.78 284.78 -7.73 -35.51 By element: Atomic # 1 Polarization: 11.56 SS G_CDS: -6.21 Total: 5.35 kcal Atomic # 6 Polarization: -14.87 SS G_CDS: -0.40 Total: -15.27 kcal Atomic # 7 Polarization: -39.31 SS G_CDS: -0.01 Total: -39.32 kcal Atomic # 8 Polarization: -6.45 SS G_CDS: -0.38 Total: -6.84 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.27 kcal Total LS contribution 4.29 Total: 4.29 kcal Total: -27.78 -7.73 -35.51 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083425686.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.909 kcal (2) G-P(sol) polarization free energy of solvation -27.783 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.692 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.731 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.514 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.423 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds