Wall clock time and date at job start Sun Mar 29 2020 21:52:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53008 * 109.47104 * 2 1 4 4 H 1.09002 * 109.46869 * 305.65071 * 3 2 1 5 5 C 1.50698 * 109.47131 * 185.65148 * 3 2 1 6 6 H 1.08003 * 119.99884 * 239.99585 * 5 3 2 7 7 C 1.37877 * 119.99900 * 59.99835 * 5 3 2 8 8 N 1.31504 * 120.00247 * 359.97438 * 7 5 3 9 9 Si 1.86805 * 119.99548 * 180.02562 * 7 5 3 10 10 H 1.48493 * 109.47237 * 359.97438 * 9 7 5 11 11 H 1.48499 * 109.47250 * 119.99958 * 9 7 5 12 12 H 1.48499 * 109.46723 * 239.99748 * 9 7 5 13 13 N 1.46898 * 109.47164 * 65.64526 * 3 2 1 14 14 C 1.46899 * 111.00039 * 215.72038 * 13 3 2 15 15 H 1.08996 * 108.94331 * 31.00473 * 14 13 3 16 16 C 1.46282 * 108.96155 * 149.77272 * 14 13 3 17 17 C 1.54200 * 112.07574 * 181.55859 * 16 14 13 18 18 C 1.50413 * 108.77049 * 282.18921 * 17 16 14 19 19 O 1.44182 * 112.77535 * 92.57453 * 18 17 16 20 20 C 1.44188 * 116.92736 * 318.47945 * 19 18 17 21 21 C 1.50477 * 112.70189 * 318.46543 * 20 19 18 22 22 H 1.08998 * 109.47648 * 292.62603 * 1 2 3 23 23 H 1.09000 * 109.47148 * 52.63049 * 1 2 3 24 24 H 1.09004 * 109.47070 * 172.62913 * 1 2 3 25 25 H 1.09000 * 109.47230 * 119.99002 * 2 1 3 26 26 H 1.08999 * 109.47348 * 239.99970 * 2 1 3 27 27 H 0.97002 * 120.00011 * 180.02562 * 8 7 5 28 28 H 1.00893 * 111.00125 * 339.67904 * 13 3 2 29 29 H 1.09002 * 108.95905 * 302.22729 * 16 14 13 30 30 H 1.08997 * 108.96185 * 60.97788 * 16 14 13 31 31 H 1.09004 * 109.58655 * 41.97216 * 17 16 14 32 32 H 1.08994 * 109.58817 * 162.25535 * 17 16 14 33 33 H 1.09001 * 108.82210 * 213.42382 * 18 17 16 34 34 H 1.09001 * 108.81902 * 331.72855 * 18 17 16 35 35 H 1.08999 * 108.81948 * 79.32620 * 20 19 18 36 36 H 1.09005 * 108.81870 * 197.73173 * 20 19 18 37 37 H 1.08997 * 109.66686 * 332.86950 * 21 20 19 38 38 H 1.09003 * 109.53429 * 212.41764 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.5963 1.9848 -0.8351 5 6 3.5404 1.4449 -0.1399 6 1 4.1540 1.8866 0.6314 7 6 4.1299 0.8831 -1.2526 8 7 3.3828 0.3449 -2.1915 9 14 5.9899 0.8854 -1.4256 10 1 6.5963 1.5462 -0.2420 11 1 6.4802 -0.5133 -1.5176 12 1 6.3717 1.6257 -2.6550 13 7 1.6647 2.0946 1.2617 14 6 1.3367 3.5101 1.0456 15 1 0.9159 3.6273 0.0470 16 6 0.3398 3.9232 2.0332 17 6 -0.0863 5.3934 1.8465 18 6 0.9856 6.2837 2.4128 19 8 1.9555 6.6871 1.4252 20 6 2.3948 5.6797 0.4918 21 6 2.6295 4.3449 1.1457 22 1 -0.3634 0.3953 0.9485 23 1 -0.3633 0.6237 -0.8167 24 1 -0.3633 -1.0192 -0.1318 25 1 1.8933 -0.5137 0.8901 26 1 1.8933 -0.5138 -0.8900 27 1 3.7976 -0.0506 -2.9741 28 1 0.8993 1.6098 1.7056 29 1 -0.5387 3.2850 1.9379 30 1 0.7591 3.8015 3.0319 31 1 -0.2138 5.6049 0.7848 32 1 -1.0259 5.5707 2.3697 33 1 0.5179 7.1750 2.8309 34 1 1.4992 5.7504 3.2128 35 1 1.6371 5.5642 -0.2832 36 1 3.3238 6.0112 0.0280 37 1 2.8901 4.4907 2.1940 38 1 3.4402 3.8260 0.6342 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000083425686.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:52:27 Heat of formation + Delta-G solvation = -75.510521 kcal Electronic energy + Delta-G solvation = -16942.182174 eV Core-core repulsion = 14397.338586 eV Total energy + Delta-G solvation = -2544.843589 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.58424 -38.07837 -35.67915 -33.85229 -33.22085 -31.20685 -28.93063 -27.09785 -25.74866 -24.33263 -21.86042 -21.28568 -21.06489 -18.35206 -17.72320 -17.36616 -16.71688 -16.01297 -15.74646 -15.62362 -14.80270 -14.61893 -14.25991 -14.00024 -13.85173 -13.53233 -13.27448 -13.04647 -12.82566 -12.57081 -12.33400 -12.24854 -11.98863 -11.88471 -11.58285 -11.49859 -11.33427 -11.09259 -10.94261 -10.41240 -10.39369 -8.99737 -8.04465 -6.14625 1.39358 1.42413 1.53360 2.44519 2.89057 3.19855 3.45558 3.87233 3.95444 4.04041 4.16422 4.35168 4.45995 4.54480 4.55082 4.68293 4.69932 4.73087 4.75354 4.85537 4.95638 5.07147 5.14688 5.17971 5.21024 5.23153 5.35112 5.39423 5.48614 5.62859 5.77631 5.92893 6.33593 6.39569 6.58970 6.98846 7.02435 7.53780 8.98647 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.025674 B = 0.008961 C = 0.007051 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1090.332073 B = 3123.866762 C = 3970.016370 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.128 4.128 3 C 0.227 3.773 4 H -0.028 1.028 5 C -0.498 4.498 6 H 0.053 0.947 7 C 0.007 3.993 8 N -0.921 5.921 9 Si 0.949 3.051 10 H -0.270 1.270 11 H -0.282 1.282 12 H -0.284 1.284 13 N -0.686 5.686 14 C 0.099 3.901 15 H 0.013 0.987 16 C -0.121 4.121 17 C -0.143 4.143 18 C 0.058 3.942 19 O -0.414 6.414 20 C 0.072 3.928 21 C -0.135 4.135 22 H 0.058 0.942 23 H 0.034 0.966 24 H 0.056 0.944 25 H 0.037 0.963 26 H 0.067 0.933 27 H 0.258 0.742 28 H 0.329 0.671 29 H 0.068 0.932 30 H 0.074 0.926 31 H 0.061 0.939 32 H 0.105 0.895 33 H 0.106 0.894 34 H 0.051 0.949 35 H 0.043 0.957 36 H 0.086 0.914 37 H 0.069 0.931 38 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.098 7.612 7.658 12.922 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.167 4.167 3 C 0.119 3.881 4 H -0.010 1.010 5 C -0.537 4.537 6 H 0.071 0.929 7 C -0.190 4.190 8 N -0.562 5.562 9 Si 0.776 3.224 10 H -0.194 1.194 11 H -0.208 1.208 12 H -0.210 1.210 13 N -0.318 5.318 14 C -0.012 4.012 15 H 0.031 0.969 16 C -0.158 4.158 17 C -0.181 4.181 18 C -0.018 4.018 19 O -0.334 6.334 20 C -0.005 4.005 21 C -0.174 4.174 22 H 0.077 0.923 23 H 0.053 0.947 24 H 0.075 0.925 25 H 0.056 0.944 26 H 0.085 0.915 27 H 0.067 0.933 28 H 0.148 0.852 29 H 0.086 0.914 30 H 0.093 0.907 31 H 0.080 0.920 32 H 0.124 0.876 33 H 0.124 0.876 34 H 0.069 0.931 35 H 0.061 0.939 36 H 0.104 0.896 37 H 0.088 0.912 38 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -6.363 7.813 7.673 12.665 hybrid contribution 0.219 -0.739 -1.068 1.317 sum -6.144 7.075 6.605 11.464 Atomic orbital electron populations 1.21737 0.96316 1.01014 1.00454 1.21706 0.94219 0.99483 1.01279 1.19019 0.94110 0.90273 0.84715 1.01029 1.21538 0.92801 1.35558 1.03809 0.92909 1.25660 1.01840 0.95669 0.95873 1.70001 1.35958 1.40314 1.09959 0.85632 0.81414 0.77574 0.77775 1.19447 1.20822 1.20979 1.60681 1.42745 1.01739 1.26588 1.20505 0.94417 0.89442 0.96787 0.96899 1.20877 0.98018 0.97193 0.99752 1.21852 1.00084 0.93853 1.02318 1.22477 0.89146 1.00029 0.90134 1.88172 1.61029 1.37651 1.46549 1.22205 0.99299 0.88057 0.90906 1.21883 0.99082 0.94903 1.01486 0.92304 0.94717 0.92524 0.94424 0.91456 0.93256 0.85220 0.91383 0.90700 0.91994 0.87644 0.87563 0.93104 0.93907 0.89551 0.91247 0.91360 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.09 9.66 71.98 0.70 -4.39 16 2 C -0.13 -5.98 5.27 30.60 0.16 -5.82 16 3 C 0.23 11.23 2.03 44.17 0.09 11.32 16 4 H -0.03 -1.55 7.17 -2.39 -0.02 -1.57 16 5 C -0.50 -27.35 7.59 25.60 0.19 -27.16 16 6 H 0.05 2.96 7.08 -2.91 -0.02 2.94 16 7 C 0.01 0.40 5.29 84.66 0.45 0.85 16 8 N -0.92 -53.07 11.29 21.45 0.24 -52.83 16 9 Si 0.95 44.37 29.54 68.60 2.03 46.39 16 10 H -0.27 -12.38 7.11 99.48 0.71 -11.67 16 11 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 12 H -0.28 -13.06 7.11 99.48 0.71 -12.35 16 13 N -0.69 -28.06 6.14 -481.90 -2.96 -31.02 16 14 C 0.10 3.53 2.07 43.26 0.09 3.62 16 15 H 0.01 0.53 6.64 -2.39 -0.02 0.51 16 16 C -0.12 -3.23 4.50 28.93 0.13 -3.10 16 17 C -0.14 -3.19 5.61 30.16 0.17 -3.02 16 18 C 0.06 1.36 6.26 71.15 0.45 1.80 16 19 O -0.41 -12.56 10.88 -148.98 -1.62 -14.18 16 20 C 0.07 2.34 6.27 71.17 0.45 2.79 16 21 C -0.14 -4.93 5.17 30.19 0.16 -4.77 16 22 H 0.06 1.86 6.78 -2.39 -0.02 1.85 16 23 H 0.03 1.32 8.13 -2.39 -0.02 1.30 16 24 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 25 H 0.04 1.73 8.14 -2.39 -0.02 1.71 16 26 H 0.07 3.61 5.94 -2.39 -0.01 3.60 16 27 H 0.26 14.22 8.31 -92.71 -0.77 13.45 16 28 H 0.33 12.01 6.02 -89.70 -0.54 11.47 16 29 H 0.07 1.69 7.99 -2.39 -0.02 1.67 16 30 H 0.07 1.94 7.55 -2.39 -0.02 1.92 16 31 H 0.06 1.55 7.15 -2.38 -0.02 1.53 16 32 H 0.11 1.72 8.14 -2.39 -0.02 1.70 16 33 H 0.11 1.93 8.14 -2.39 -0.02 1.91 16 34 H 0.05 1.20 6.67 -2.39 -0.02 1.18 16 35 H 0.04 1.41 6.67 -2.39 -0.02 1.40 16 36 H 0.09 2.73 8.14 -2.38 -0.02 2.71 16 37 H 0.07 2.42 7.14 -2.39 -0.02 2.40 16 38 H 0.07 2.99 5.95 -2.39 -0.01 2.97 16 Total: -1.00 -60.52 284.78 1.21 -59.31 By element: Atomic # 1 Polarization: 19.72 SS G_CDS: 0.49 Total: 20.21 kcal Atomic # 6 Polarization: -30.93 SS G_CDS: 3.03 Total: -27.90 kcal Atomic # 7 Polarization: -81.13 SS G_CDS: -2.72 Total: -83.84 kcal Atomic # 8 Polarization: -12.56 SS G_CDS: -1.62 Total: -14.18 kcal Atomic # 14 Polarization: 44.37 SS G_CDS: 2.03 Total: 46.39 kcal Total: -60.52 1.21 -59.31 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083425686.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.196 kcal (2) G-P(sol) polarization free energy of solvation -60.523 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.719 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.208 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.315 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.511 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds