Wall clock time and date at job start Sun Mar 29 2020 21:50:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53006 * 109.46701 * 2 1 4 4 H 1.09007 * 109.46764 * 183.87923 * 3 2 1 5 5 C 1.50695 * 109.47322 * 303.88055 * 3 2 1 6 6 H 1.08005 * 119.99734 * 115.44045 * 5 3 2 7 7 C 1.37874 * 120.00357 * 295.43850 * 5 3 2 8 8 N 1.31520 * 119.99970 * 354.08027 * 7 5 3 9 9 Si 1.86801 * 120.00318 * 174.07952 * 7 5 3 10 10 H 1.48497 * 109.47144 * 179.97438 * 9 7 5 11 11 H 1.48502 * 109.46933 * 300.00345 * 9 7 5 12 12 H 1.48501 * 109.46839 * 59.99946 * 9 7 5 13 13 N 1.46897 * 109.47027 * 63.88769 * 3 2 1 14 14 C 1.46899 * 111.00570 * 80.82710 * 13 3 2 15 15 C 1.52997 * 109.47493 * 184.62886 * 14 13 3 16 16 O 1.42900 * 110.01656 * 63.60402 * 15 14 13 17 17 C 1.54268 * 110.02994 * 302.16508 * 15 14 13 18 18 C 1.54885 * 104.19573 * 217.10195 * 17 15 14 19 19 C 1.54889 * 102.74837 * 37.94621 * 18 17 15 20 20 C 1.53866 * 110.03503 * 184.99936 * 15 14 13 21 21 H 1.09005 * 109.47092 * 304.85793 * 1 2 3 22 22 H 1.08994 * 109.47311 * 64.85838 * 1 2 3 23 23 H 1.08998 * 109.46874 * 184.85989 * 1 2 3 24 24 H 1.08995 * 109.46738 * 240.00692 * 2 1 3 25 25 H 1.09001 * 109.47385 * 120.00153 * 2 1 3 26 26 H 0.97003 * 119.99445 * 354.18951 * 8 7 5 27 27 H 1.00910 * 110.99901 * 316.86825 * 13 3 2 28 28 H 1.09008 * 109.46865 * 304.62823 * 14 13 3 29 29 H 1.09003 * 109.46907 * 64.62383 * 14 13 3 30 30 H 0.96701 * 114.00384 * 300.70565 * 16 15 14 31 31 H 1.09001 * 110.48789 * 335.78366 * 17 15 14 32 32 H 1.09007 * 110.48762 * 98.42709 * 17 15 14 33 33 H 1.08999 * 110.75874 * 279.63168 * 18 17 15 34 34 H 1.09008 * 110.75354 * 156.25680 * 18 17 15 35 35 H 1.08995 * 110.48695 * 203.38035 * 19 18 17 36 36 H 1.08995 * 110.48997 * 80.73103 * 19 18 17 37 37 H 1.08997 * 110.03688 * 238.57026 * 20 15 14 38 38 H 1.09002 * 110.03312 * 359.97438 * 20 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 3.1278 1.4434 -0.0695 5 6 1.4606 2.1802 -1.1795 6 1 0.7885 3.0105 -1.0201 7 6 1.7885 1.7952 -2.4622 8 7 2.6949 0.8623 -2.6573 9 14 0.9456 2.5985 -3.9228 10 1 1.4720 2.0127 -5.1818 11 1 -0.5183 2.3628 -3.8407 12 1 1.2134 4.0591 -3.9071 13 7 1.6284 2.1074 1.2436 14 6 2.5281 1.7569 2.3507 15 6 2.0032 2.3729 3.6491 16 8 0.7298 1.8130 3.9763 17 6 1.8854 3.9036 3.4979 18 6 2.3024 4.4554 4.8838 19 6 3.4535 3.5054 5.2977 20 6 3.0002 2.1197 4.7934 21 1 -0.3633 0.5874 0.8433 22 1 -0.3633 0.4366 -0.9302 23 1 -0.3633 -1.0240 0.0871 24 1 1.8933 -0.5137 -0.8900 25 1 1.8934 -0.5138 0.8900 26 1 3.1928 0.5051 -1.9054 27 1 0.6707 1.8862 1.4720 28 1 2.5713 0.6726 2.4544 29 1 3.5265 2.1421 2.1433 30 1 0.0543 1.9490 3.2980 31 1 2.5634 4.2639 2.7241 32 1 0.8581 4.1864 3.2681 33 1 1.4749 4.3904 5.5903 34 1 2.6600 5.4817 4.7993 35 1 3.5706 3.4974 6.3813 36 1 4.3847 3.8012 4.8146 37 1 2.5126 1.5704 5.5988 38 1 3.8578 1.5575 4.4239 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000083466236.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:50:04 Heat of formation + Delta-G solvation = -75.156780 kcal Electronic energy + Delta-G solvation = -16774.137424 eV Core-core repulsion = 14229.309175 eV Total energy + Delta-G solvation = -2544.828249 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.24566 -36.46332 -34.68998 -32.57583 -30.74571 -28.78538 -28.06869 -25.67503 -23.60250 -23.08878 -20.75854 -19.61085 -19.51875 -17.07742 -16.23565 -15.55576 -15.39938 -14.47863 -13.83200 -13.69665 -13.57171 -13.25330 -12.74964 -12.70949 -12.21729 -12.03193 -11.48283 -11.34185 -11.15652 -11.07239 -10.92570 -10.78032 -10.55598 -10.43659 -10.15862 -10.07129 -10.04348 -9.86992 -9.55521 -8.58918 -8.28917 -7.37347 -6.30269 -4.00141 3.45624 3.46616 3.65416 4.35549 4.52301 4.69269 4.74833 5.03810 5.17463 5.38556 5.39925 5.59732 5.65234 5.72776 5.77225 5.92636 5.96081 6.07332 6.09043 6.12544 6.16355 6.26898 6.30554 6.33001 6.50750 6.51490 6.68894 6.97294 7.04098 7.24920 7.26998 7.86157 7.88916 8.22222 8.41131 8.61860 8.91340 9.67927 11.05329 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.037656 B = 0.006772 C = 0.006406 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 743.395223 B = 4133.386178 C = 4369.582625 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.153 4.153 3 C 0.205 3.795 4 H 0.025 0.975 5 C -0.571 4.571 6 H 0.054 0.946 7 C 0.018 3.982 8 N -0.916 5.916 9 Si 1.064 2.936 10 H -0.284 1.284 11 H -0.289 1.289 12 H -0.289 1.289 13 N -0.673 5.673 14 C 0.034 3.966 15 C 0.129 3.871 16 O -0.565 6.565 17 C -0.132 4.132 18 C -0.125 4.125 19 C -0.122 4.122 20 C -0.112 4.112 21 H 0.034 0.966 22 H 0.067 0.933 23 H 0.026 0.974 24 H 0.068 0.932 25 H 0.020 0.980 26 H 0.268 0.732 27 H 0.322 0.678 28 H 0.026 0.974 29 H 0.071 0.929 30 H 0.374 0.626 31 H 0.081 0.919 32 H 0.068 0.932 33 H 0.064 0.936 34 H 0.063 0.937 35 H 0.063 0.937 36 H 0.066 0.934 37 H 0.073 0.927 38 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.104 3.248 12.409 12.874 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.193 4.193 3 C 0.097 3.903 4 H 0.043 0.957 5 C -0.609 4.609 6 H 0.073 0.927 7 C -0.185 4.185 8 N -0.553 5.553 9 Si 0.893 3.107 10 H -0.210 1.210 11 H -0.215 1.215 12 H -0.215 1.215 13 N -0.304 5.304 14 C -0.096 4.096 15 C 0.089 3.911 16 O -0.371 6.371 17 C -0.169 4.169 18 C -0.163 4.163 19 C -0.160 4.160 20 C -0.150 4.150 21 H 0.053 0.947 22 H 0.086 0.914 23 H 0.046 0.954 24 H 0.087 0.913 25 H 0.039 0.961 26 H 0.079 0.921 27 H 0.141 0.859 28 H 0.044 0.956 29 H 0.090 0.910 30 H 0.222 0.778 31 H 0.100 0.900 32 H 0.087 0.913 33 H 0.083 0.917 34 H 0.082 0.918 35 H 0.082 0.918 36 H 0.085 0.915 37 H 0.092 0.908 38 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -0.568 3.614 11.141 11.726 hybrid contribution -0.373 -0.825 1.298 1.582 sum -0.941 2.789 12.438 12.782 Atomic orbital electron populations 1.21528 0.96778 0.98277 1.01782 1.22217 0.96133 1.01398 0.99527 1.19301 0.95350 0.88425 0.87241 0.95750 1.21819 1.30513 1.17574 0.91032 0.92722 1.25702 0.96694 0.95938 1.00179 1.70801 1.22372 1.26782 1.35350 0.83611 0.75631 0.75576 0.75875 1.20991 1.21543 1.21546 1.60887 1.04576 1.62245 1.02736 1.22671 0.98272 0.97442 0.91229 1.21958 0.83569 0.92282 0.93307 1.86476 1.21243 1.80886 1.48505 1.22856 1.02533 0.94748 0.96800 1.22507 0.97923 0.98440 0.97426 1.22340 0.98582 0.94793 1.00271 1.22114 0.97603 0.97719 0.97576 0.94692 0.91387 0.95448 0.91296 0.96130 0.92071 0.85903 0.95623 0.91047 0.77793 0.90026 0.91285 0.91746 0.91849 0.91829 0.91537 0.90817 0.91051 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.61 9.38 37.16 0.35 -2.26 16 2 C -0.15 -3.49 5.46 -26.73 -0.15 -3.64 16 3 C 0.21 4.97 1.95 -68.87 -0.13 4.83 16 4 H 0.02 0.66 7.31 -51.93 -0.38 0.28 16 5 C -0.57 -15.39 7.43 -34.44 -0.26 -15.65 16 6 H 0.05 1.50 7.82 -52.48 -0.41 1.09 16 7 C 0.02 0.51 5.27 -17.82 -0.09 0.41 16 8 N -0.92 -26.89 12.87 55.43 0.71 -26.18 16 9 Si 1.06 24.86 29.91 -169.99 -5.08 19.78 16 10 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 11 H -0.29 -6.45 7.11 56.52 0.40 -6.05 16 12 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 13 N -0.67 -13.64 5.80 -107.95 -0.63 -14.27 16 14 C 0.03 0.61 4.33 -3.83 -0.02 0.59 16 15 C 0.13 1.96 1.12 -89.51 -0.10 1.85 16 16 O -0.56 -8.76 12.89 -35.23 -0.45 -9.21 16 17 C -0.13 -1.89 5.67 -25.07 -0.14 -2.03 16 18 C -0.13 -1.51 6.91 -24.74 -0.17 -1.68 16 19 C -0.12 -1.40 6.83 -25.07 -0.17 -1.57 16 20 C -0.11 -1.49 6.27 -25.62 -0.16 -1.65 16 21 H 0.03 0.65 6.24 -51.93 -0.32 0.32 16 22 H 0.07 1.54 7.30 -51.93 -0.38 1.16 16 23 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 24 H 0.07 1.75 6.27 -51.93 -0.33 1.42 16 25 H 0.02 0.43 7.04 -51.93 -0.37 0.07 16 26 H 0.27 7.85 6.05 -40.82 -0.25 7.61 16 27 H 0.32 6.15 4.92 -39.29 -0.19 5.96 16 28 H 0.03 0.48 7.01 -51.92 -0.36 0.12 16 29 H 0.07 1.31 8.14 -51.93 -0.42 0.88 16 30 H 0.37 5.17 7.52 45.56 0.34 5.51 16 31 H 0.08 1.29 7.85 -51.93 -0.41 0.88 16 32 H 0.07 1.00 8.06 -51.93 -0.42 0.58 16 33 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.06 0.69 8.14 -51.92 -0.42 0.27 16 35 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.07 0.98 7.95 -51.93 -0.41 0.57 16 38 H 0.07 0.91 7.67 -51.93 -0.40 0.51 16 LS Contribution 291.26 15.07 4.39 4.39 Total: -1.00 -28.88 291.26 -7.72 -36.61 By element: Atomic # 1 Polarization: 15.29 SS G_CDS: -5.62 Total: 9.67 kcal Atomic # 6 Polarization: -19.74 SS G_CDS: -1.04 Total: -20.78 kcal Atomic # 7 Polarization: -40.54 SS G_CDS: 0.09 Total: -40.45 kcal Atomic # 8 Polarization: -8.76 SS G_CDS: -0.45 Total: -9.21 kcal Atomic # 14 Polarization: 24.86 SS G_CDS: -5.08 Total: 19.78 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -28.88 -7.72 -36.61 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083466236.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.551 kcal (2) G-P(sol) polarization free energy of solvation -28.885 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.436 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.721 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.605 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.157 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds