Wall clock time and date at job start Sun Mar 29 2020 21:50:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53006 * 109.46701 * 2 1 4 4 H 1.09007 * 109.46764 * 183.87923 * 3 2 1 5 5 C 1.50695 * 109.47322 * 303.88055 * 3 2 1 6 6 H 1.08005 * 119.99734 * 115.44045 * 5 3 2 7 7 C 1.37874 * 120.00357 * 295.43850 * 5 3 2 8 8 N 1.31520 * 119.99970 * 354.08027 * 7 5 3 9 9 Si 1.86801 * 120.00318 * 174.07952 * 7 5 3 10 10 H 1.48497 * 109.47144 * 179.97438 * 9 7 5 11 11 H 1.48502 * 109.46933 * 300.00345 * 9 7 5 12 12 H 1.48501 * 109.46839 * 59.99946 * 9 7 5 13 13 N 1.46897 * 109.47027 * 63.88769 * 3 2 1 14 14 C 1.46899 * 111.00570 * 80.82710 * 13 3 2 15 15 C 1.52997 * 109.47493 * 184.62886 * 14 13 3 16 16 O 1.42900 * 110.01656 * 63.60402 * 15 14 13 17 17 C 1.54268 * 110.02994 * 302.16508 * 15 14 13 18 18 C 1.54885 * 104.19573 * 217.10195 * 17 15 14 19 19 C 1.54889 * 102.74837 * 37.94621 * 18 17 15 20 20 C 1.53866 * 110.03503 * 184.99936 * 15 14 13 21 21 H 1.09005 * 109.47092 * 304.85793 * 1 2 3 22 22 H 1.08994 * 109.47311 * 64.85838 * 1 2 3 23 23 H 1.08998 * 109.46874 * 184.85989 * 1 2 3 24 24 H 1.08995 * 109.46738 * 240.00692 * 2 1 3 25 25 H 1.09001 * 109.47385 * 120.00153 * 2 1 3 26 26 H 0.97003 * 119.99445 * 354.18951 * 8 7 5 27 27 H 1.00910 * 110.99901 * 316.86825 * 13 3 2 28 28 H 1.09008 * 109.46865 * 304.62823 * 14 13 3 29 29 H 1.09003 * 109.46907 * 64.62383 * 14 13 3 30 30 H 0.96701 * 114.00384 * 300.70565 * 16 15 14 31 31 H 1.09001 * 110.48789 * 335.78366 * 17 15 14 32 32 H 1.09007 * 110.48762 * 98.42709 * 17 15 14 33 33 H 1.08999 * 110.75874 * 279.63168 * 18 17 15 34 34 H 1.09008 * 110.75354 * 156.25680 * 18 17 15 35 35 H 1.08995 * 110.48695 * 203.38035 * 19 18 17 36 36 H 1.08995 * 110.48997 * 80.73103 * 19 18 17 37 37 H 1.08997 * 110.03688 * 238.57026 * 20 15 14 38 38 H 1.09002 * 110.03312 * 359.97438 * 20 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 3.1278 1.4434 -0.0695 5 6 1.4606 2.1802 -1.1795 6 1 0.7885 3.0105 -1.0201 7 6 1.7885 1.7952 -2.4622 8 7 2.6949 0.8623 -2.6573 9 14 0.9456 2.5985 -3.9228 10 1 1.4720 2.0127 -5.1818 11 1 -0.5183 2.3628 -3.8407 12 1 1.2134 4.0591 -3.9071 13 7 1.6284 2.1074 1.2436 14 6 2.5281 1.7569 2.3507 15 6 2.0032 2.3729 3.6491 16 8 0.7298 1.8130 3.9763 17 6 1.8854 3.9036 3.4979 18 6 2.3024 4.4554 4.8838 19 6 3.4535 3.5054 5.2977 20 6 3.0002 2.1197 4.7934 21 1 -0.3633 0.5874 0.8433 22 1 -0.3633 0.4366 -0.9302 23 1 -0.3633 -1.0240 0.0871 24 1 1.8933 -0.5137 -0.8900 25 1 1.8934 -0.5138 0.8900 26 1 3.1928 0.5051 -1.9054 27 1 0.6707 1.8862 1.4720 28 1 2.5713 0.6726 2.4544 29 1 3.5265 2.1421 2.1433 30 1 0.0543 1.9490 3.2980 31 1 2.5634 4.2639 2.7241 32 1 0.8581 4.1864 3.2681 33 1 1.4749 4.3904 5.5903 34 1 2.6600 5.4817 4.7993 35 1 3.5706 3.4974 6.3813 36 1 4.3847 3.8012 4.8146 37 1 2.5126 1.5704 5.5988 38 1 3.8578 1.5575 4.4239 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000083466236.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:50:04 Heat of formation + Delta-G solvation = -94.798990 kcal Electronic energy + Delta-G solvation = -16774.989174 eV Core-core repulsion = 14229.309175 eV Total energy + Delta-G solvation = -2545.679999 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.50034 -38.21196 -35.84495 -34.46757 -32.51212 -29.93385 -29.41797 -27.47353 -25.54320 -24.55377 -21.82346 -21.38522 -20.79088 -18.93183 -17.68129 -16.88404 -16.62359 -16.01461 -15.63524 -15.33677 -15.25616 -14.53343 -14.30198 -14.11226 -13.77358 -13.49531 -13.14413 -12.92099 -12.61944 -12.51261 -12.17187 -12.03576 -11.97038 -11.93851 -11.89639 -11.72856 -11.44984 -11.42376 -10.89317 -10.56318 -10.38723 -9.10121 -8.51014 -6.21513 1.56125 1.62794 1.81611 2.60349 3.21604 3.25241 3.35147 3.67115 3.83544 3.89824 4.22485 4.30009 4.33320 4.41397 4.49770 4.54893 4.57141 4.71070 4.82759 4.85840 4.92300 5.00177 5.03222 5.09538 5.17460 5.19245 5.23698 5.36360 5.38984 5.47764 5.50078 5.93847 6.18533 6.51349 6.65263 6.75391 6.76052 7.54541 8.84527 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.037656 B = 0.006772 C = 0.006406 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 743.395223 B = 4133.386178 C = 4369.582625 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.145 4.145 3 C 0.209 3.791 4 H -0.010 1.010 5 C -0.574 4.574 6 H 0.048 0.952 7 C -0.029 4.029 8 N -0.941 5.941 9 Si 1.108 2.892 10 H -0.289 1.289 11 H -0.270 1.270 12 H -0.276 1.276 13 N -0.670 5.670 14 C 0.039 3.961 15 C 0.133 3.867 16 O -0.569 6.569 17 C -0.132 4.132 18 C -0.120 4.120 19 C -0.118 4.118 20 C -0.114 4.114 21 H 0.055 0.945 22 H 0.045 0.955 23 H 0.049 0.951 24 H 0.038 0.962 25 H 0.032 0.968 26 H 0.256 0.744 27 H 0.331 0.669 28 H 0.017 0.983 29 H 0.061 0.939 30 H 0.380 0.620 31 H 0.063 0.937 32 H 0.066 0.934 33 H 0.070 0.930 34 H 0.076 0.924 35 H 0.084 0.916 36 H 0.070 0.930 37 H 0.076 0.924 38 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.087 4.016 13.762 14.487 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.185 4.185 3 C 0.100 3.900 4 H 0.008 0.992 5 C -0.613 4.613 6 H 0.067 0.933 7 C -0.227 4.227 8 N -0.579 5.579 9 Si 0.931 3.069 10 H -0.215 1.215 11 H -0.196 1.196 12 H -0.201 1.201 13 N -0.303 5.303 14 C -0.091 4.091 15 C 0.093 3.907 16 O -0.377 6.377 17 C -0.170 4.170 18 C -0.157 4.157 19 C -0.155 4.155 20 C -0.152 4.152 21 H 0.074 0.926 22 H 0.064 0.936 23 H 0.068 0.932 24 H 0.057 0.943 25 H 0.051 0.949 26 H 0.066 0.934 27 H 0.151 0.849 28 H 0.035 0.965 29 H 0.080 0.920 30 H 0.229 0.771 31 H 0.081 0.919 32 H 0.085 0.915 33 H 0.088 0.912 34 H 0.095 0.905 35 H 0.103 0.897 36 H 0.089 0.911 37 H 0.094 0.906 38 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -1.564 4.389 12.524 13.363 hybrid contribution -0.047 -1.072 0.926 1.418 sum -1.612 3.317 13.451 13.947 Atomic orbital electron populations 1.21449 0.94762 0.99992 1.01472 1.22076 0.97832 1.00016 0.98599 1.19074 0.93115 0.89430 0.88408 0.99238 1.22077 1.29830 1.17268 0.92100 0.93343 1.26984 0.96642 0.95829 1.03197 1.70913 1.23764 1.28403 1.34851 0.83042 0.75732 0.75368 0.72769 1.21534 1.19563 1.20134 1.60732 1.05475 1.61799 1.02279 1.22694 0.97543 0.97039 0.91859 1.21973 0.83859 0.92530 0.92378 1.86476 1.21390 1.80993 1.48813 1.22809 1.01988 0.94185 0.97985 1.22491 0.98327 0.99200 0.95700 1.22353 0.98404 0.93191 1.01600 1.22160 0.97089 0.99103 0.96812 0.92591 0.93594 0.93172 0.94304 0.94892 0.93389 0.84919 0.96533 0.92015 0.77091 0.91867 0.91531 0.91154 0.90503 0.89730 0.91137 0.90568 0.90978 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.79 9.38 71.98 0.68 -4.11 16 2 C -0.15 -6.67 5.46 30.60 0.17 -6.51 16 3 C 0.21 10.28 1.95 44.17 0.09 10.37 16 4 H -0.01 -0.57 7.31 -2.38 -0.02 -0.59 16 5 C -0.57 -31.21 7.43 25.60 0.19 -31.02 16 6 H 0.05 2.65 7.82 -2.91 -0.02 2.63 16 7 C -0.03 -1.61 5.27 84.65 0.45 -1.16 16 8 N -0.94 -56.51 12.87 21.45 0.28 -56.24 16 9 Si 1.11 49.87 29.91 68.60 2.05 51.93 16 10 H -0.29 -13.22 7.11 99.48 0.71 -12.51 16 11 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 12 H -0.28 -11.74 7.11 99.48 0.71 -11.04 16 13 N -0.67 -27.07 5.80 -495.44 -2.88 -29.94 16 14 C 0.04 1.37 4.33 86.30 0.37 1.74 16 15 C 0.13 3.85 1.12 -10.07 -0.01 3.83 16 16 O -0.57 -16.57 12.89 -148.98 -1.92 -18.50 16 17 C -0.13 -3.60 5.67 31.67 0.18 -3.42 16 18 C -0.12 -2.57 6.91 31.88 0.22 -2.35 16 19 C -0.12 -2.38 6.83 31.67 0.22 -2.17 16 20 C -0.11 -2.79 6.27 31.32 0.20 -2.60 16 21 H 0.06 1.98 6.24 -2.38 -0.01 1.96 16 22 H 0.04 2.04 7.30 -2.39 -0.02 2.02 16 23 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 24 H 0.04 2.01 6.27 -2.39 -0.01 1.99 16 25 H 0.03 1.40 7.04 -2.39 -0.02 1.38 16 26 H 0.26 15.59 6.05 -92.71 -0.56 15.03 16 27 H 0.33 12.27 4.92 -89.69 -0.44 11.83 16 28 H 0.02 0.62 7.01 -2.38 -0.02 0.60 16 29 H 0.06 2.29 8.14 -2.39 -0.02 2.27 16 30 H 0.38 9.77 7.52 -74.06 -0.56 9.21 16 31 H 0.06 1.95 7.85 -2.39 -0.02 1.94 16 32 H 0.07 1.83 8.06 -2.38 -0.02 1.81 16 33 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 34 H 0.08 1.46 8.14 -2.38 -0.02 1.44 16 35 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 36 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 37 H 0.08 1.85 7.95 -2.39 -0.02 1.83 16 38 H 0.07 1.74 7.67 -2.39 -0.02 1.73 16 Total: -1.00 -61.81 291.26 0.52 -61.29 By element: Atomic # 1 Polarization: 28.60 SS G_CDS: 0.25 Total: 28.85 kcal Atomic # 6 Polarization: -40.12 SS G_CDS: 2.74 Total: -37.38 kcal Atomic # 7 Polarization: -83.58 SS G_CDS: -2.60 Total: -86.18 kcal Atomic # 8 Polarization: -16.57 SS G_CDS: -1.92 Total: -18.50 kcal Atomic # 14 Polarization: 49.87 SS G_CDS: 2.05 Total: 51.93 kcal Total: -61.81 0.52 -61.29 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083466236.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.512 kcal (2) G-P(sol) polarization free energy of solvation -61.809 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.320 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.521 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.287 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.799 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds