Wall clock time and date at job start Sun Mar 29 2020 21:56:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52988 * 1 3 3 C 1.53005 * 109.47113 * 2 1 4 4 H 1.09001 * 109.47291 * 55.11160 * 3 2 1 5 5 C 1.52997 * 109.47100 * 175.11026 * 3 2 1 6 6 O 1.42902 * 109.47362 * 55.03489 * 5 3 2 7 7 C 1.42898 * 114.00183 * 179.97438 * 6 5 3 8 8 N 1.46898 * 109.47115 * 295.11238 * 3 2 1 9 9 C 1.46897 * 111.00261 * 96.27579 * 8 3 2 10 10 C 1.53008 * 109.47037 * 88.04528 * 9 8 3 11 11 C 1.50704 * 115.54799 * 324.31455 * 10 9 8 12 12 H 1.07990 * 119.99936 * 279.64831 * 11 10 9 13 13 C 1.37878 * 119.99461 * 99.65491 * 11 10 9 14 14 N 1.31513 * 119.99844 * 172.08967 * 13 11 10 15 15 Si 1.86807 * 120.00198 * 352.08271 * 13 11 10 16 16 H 1.48499 * 109.46787 * 89.82905 * 15 13 11 17 17 H 1.48493 * 109.47041 * 209.83153 * 15 13 11 18 18 H 1.48497 * 109.47092 * 329.83184 * 15 13 11 19 19 C 1.52995 * 117.49554 * 178.65108 * 10 9 8 20 20 C 1.52999 * 60.02913 * 252.49775 * 19 10 9 21 21 H 1.08997 * 109.47367 * 185.88879 * 1 2 3 22 22 H 1.09005 * 109.47233 * 305.88383 * 1 2 3 23 23 H 1.09007 * 109.47501 * 65.88563 * 1 2 3 24 24 H 1.09004 * 109.47235 * 240.00649 * 2 1 3 25 25 H 1.08993 * 109.47785 * 119.99968 * 2 1 3 26 26 H 1.09000 * 109.47459 * 175.03048 * 5 3 2 27 27 H 1.09001 * 109.47600 * 295.02853 * 5 3 2 28 28 H 1.09000 * 109.47157 * 179.97438 * 7 6 5 29 29 H 1.08999 * 109.47206 * 299.99821 * 7 6 5 30 30 H 1.09002 * 109.47412 * 60.00163 * 7 6 5 31 31 H 1.00894 * 110.99834 * 332.31860 * 8 3 2 32 32 H 1.08998 * 109.46690 * 328.04992 * 9 8 3 33 33 H 1.09002 * 109.47361 * 208.04565 * 9 8 3 34 34 H 0.97003 * 120.00216 * 179.97438 * 14 13 11 35 35 H 1.09000 * 117.50427 * 359.97438 * 19 10 9 36 36 H 1.09008 * 117.49882 * 144.99745 * 19 10 9 37 37 H 1.08996 * 117.49803 * 107.50673 * 20 19 10 38 38 H 1.08998 * 117.49730 * 252.51864 * 20 19 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6068 1.9811 0.8430 5 6 3.5649 1.4443 0.1230 6 8 4.1276 0.6417 -0.9169 7 6 5.5549 0.5765 -0.8930 8 7 1.6490 2.1001 -1.2541 9 6 0.4122 2.8734 -1.0798 10 6 0.7570 4.2870 -0.6063 11 6 1.9329 4.3898 0.3307 12 1 1.8080 4.1678 1.3801 13 6 3.1679 4.7676 -0.1520 14 7 4.1547 5.0085 0.6833 15 14 3.4396 4.9370 -1.9924 16 1 3.1226 6.3252 -2.4138 17 1 4.8573 4.6338 -2.3135 18 1 2.5547 3.9868 -2.7130 19 6 -0.4016 5.2637 -0.3958 20 6 0.5359 5.4365 -1.5925 21 1 -0.3634 -1.0222 0.1054 22 1 -0.3634 0.6024 0.8327 23 1 -0.3634 0.4199 -0.9380 24 1 1.8933 -0.5137 -0.8901 25 1 1.8933 -0.5138 0.8899 26 1 3.9355 2.4655 0.0344 27 1 3.8518 1.0366 1.0923 28 1 5.9037 -0.0514 -1.7129 29 1 5.9663 1.5799 -1.0029 30 1 5.8835 0.1509 0.0552 31 1 1.5529 1.4278 -2.0002 32 1 -0.2196 2.3857 -0.3375 33 1 -0.1192 2.9280 -2.0299 34 1 5.0238 5.2739 0.3437 35 1 -1.4095 4.8995 -0.5950 36 1 -0.3134 5.9808 0.4204 37 1 0.1448 5.1859 -2.5785 38 1 1.2411 6.2671 -1.5635 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000083854431.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:56:35 Heat of formation + Delta-G solvation = -18.730533 kcal Electronic energy + Delta-G solvation = -17356.285424 eV Core-core repulsion = 14813.904001 eV Total energy + Delta-G solvation = -2542.381424 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -38.21371 -36.83736 -35.25862 -31.93987 -31.05204 -28.76494 -25.81363 -25.61008 -23.93560 -22.63058 -21.54775 -19.87848 -18.59615 -16.21088 -15.73667 -15.20999 -14.97158 -14.66751 -14.44879 -14.13592 -13.66260 -12.88268 -12.71768 -12.44108 -12.27129 -12.02308 -11.59115 -11.41840 -10.99660 -10.93493 -10.64831 -10.45836 -10.25765 -10.15856 -10.00282 -9.76705 -9.43417 -8.91716 -8.87627 -8.33513 -8.21943 -7.23173 -5.92753 -3.92389 3.53088 3.63166 3.87998 4.54527 4.73285 4.87605 5.23388 5.35891 5.40157 5.51733 5.59881 5.75781 5.85542 5.87391 6.07004 6.08141 6.14684 6.22505 6.23748 6.26780 6.32981 6.40357 6.43147 6.57991 6.63941 6.66265 6.82770 6.87494 7.03656 7.20227 7.22924 7.86019 7.94077 8.10511 8.43265 8.63100 9.04889 9.75922 11.16861 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.020536 B = 0.014695 C = 0.010191 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1363.119282 B = 1904.956481 C = 2746.989010 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.150 4.150 3 C 0.113 3.887 4 H 0.100 0.900 5 C 0.067 3.933 6 O -0.392 6.392 7 C 0.036 3.964 8 N -0.652 5.652 9 C 0.093 3.907 10 C 0.014 3.986 11 C -0.469 4.469 12 H 0.069 0.931 13 C 0.090 3.910 14 N -0.908 5.908 15 Si 0.893 3.107 16 H -0.301 1.301 17 H -0.310 1.310 18 H -0.236 1.236 19 C -0.192 4.192 20 C -0.206 4.206 21 H 0.045 0.955 22 H 0.054 0.946 23 H 0.051 0.949 24 H 0.066 0.934 25 H 0.057 0.943 26 H 0.089 0.911 27 H 0.030 0.970 28 H 0.073 0.927 29 H 0.037 0.963 30 H 0.031 0.969 31 H 0.325 0.675 32 H 0.033 0.967 33 H 0.040 0.960 34 H 0.259 0.741 35 H 0.066 0.934 36 H 0.083 0.917 37 H 0.069 0.931 38 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.669 -8.414 -2.834 9.607 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.189 4.189 3 C 0.003 3.997 4 H 0.118 0.882 5 C -0.010 4.010 6 O -0.311 6.311 7 C -0.062 4.062 8 N -0.281 5.281 9 C -0.036 4.036 10 C 0.013 3.987 11 C -0.506 4.506 12 H 0.087 0.913 13 C -0.111 4.111 14 N -0.546 5.546 15 Si 0.723 3.277 16 H -0.229 1.229 17 H -0.238 1.238 18 H -0.159 1.159 19 C -0.230 4.230 20 C -0.243 4.243 21 H 0.064 0.936 22 H 0.073 0.927 23 H 0.070 0.930 24 H 0.084 0.916 25 H 0.076 0.924 26 H 0.107 0.893 27 H 0.049 0.951 28 H 0.092 0.908 29 H 0.056 0.944 30 H 0.049 0.951 31 H 0.142 0.858 32 H 0.051 0.949 33 H 0.059 0.941 34 H 0.068 0.932 35 H 0.085 0.915 36 H 0.102 0.898 37 H 0.087 0.913 38 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -3.198 -7.926 -2.858 9.012 hybrid contribution -0.082 -0.305 -0.722 0.788 sum -3.280 -8.231 -3.580 9.556 Atomic orbital electron populations 1.21868 0.96688 1.00619 1.01709 1.22236 0.95127 0.99424 1.02107 1.21548 0.93057 0.90762 0.94381 0.88248 1.22866 0.94013 0.96444 0.87633 1.87774 1.18586 1.71320 1.53390 1.22577 0.82847 1.00493 1.00239 1.60092 1.34346 1.27976 1.05698 1.21677 0.89447 0.95073 0.97441 1.19542 0.95672 0.86849 0.96661 1.19966 0.90847 1.45982 0.93780 0.91273 1.24799 0.95512 0.93222 0.97561 1.69969 1.02838 1.47170 1.34663 0.86724 0.76257 0.77337 0.87343 1.22932 1.23840 1.15937 1.22891 0.94008 1.06025 1.00045 1.22971 1.03956 1.04271 0.93126 0.93622 0.92696 0.92966 0.91577 0.92443 0.89332 0.95135 0.90833 0.94406 0.95052 0.85772 0.94856 0.94106 0.93157 0.91517 0.89818 0.91266 0.89772 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.10 8.52 37.15 0.32 -1.79 16 2 C -0.15 -2.34 5.01 -26.73 -0.13 -2.48 16 3 C 0.11 2.15 1.56 -67.71 -0.11 2.05 16 4 H 0.10 2.10 6.37 -51.93 -0.33 1.77 16 5 C 0.07 1.38 5.74 37.16 0.21 1.59 16 6 O -0.39 -7.55 9.87 -35.23 -0.35 -7.90 16 7 C 0.04 0.58 11.01 101.05 1.11 1.69 16 8 N -0.65 -12.93 4.04 -106.72 -0.43 -13.36 16 9 C 0.09 1.82 5.08 -3.82 -0.02 1.80 16 10 C 0.01 0.32 1.47 -155.62 -0.23 0.10 16 11 C -0.47 -12.41 6.67 -34.44 -0.23 -12.63 16 12 H 0.07 2.01 7.92 -52.49 -0.42 1.59 16 13 C 0.09 2.50 3.60 -17.82 -0.06 2.43 16 14 N -0.91 -26.72 13.82 55.43 0.77 -25.95 16 15 Si 0.89 22.98 23.67 -169.99 -4.02 18.96 16 16 H -0.30 -7.83 6.73 56.52 0.38 -7.45 16 17 H -0.31 -8.24 7.11 56.52 0.40 -7.84 16 18 H -0.24 -5.85 6.37 56.52 0.36 -5.49 16 19 C -0.19 -3.95 9.95 -26.73 -0.27 -4.22 16 20 C -0.21 -4.55 7.33 -26.70 -0.20 -4.74 16 21 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 22 H 0.05 0.78 7.76 -51.93 -0.40 0.38 16 23 H 0.05 0.72 6.84 -51.93 -0.36 0.37 16 24 H 0.07 1.04 7.61 -51.93 -0.40 0.65 16 25 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 26 H 0.09 2.17 5.73 -51.93 -0.30 1.87 16 27 H 0.03 0.60 8.14 -51.93 -0.42 0.17 16 28 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 29 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.03 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.32 5.92 8.32 -39.30 -0.33 5.59 16 32 H 0.03 0.61 5.66 -51.93 -0.29 0.32 16 33 H 0.04 0.74 7.91 -51.93 -0.41 0.33 16 34 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 35 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 36 H 0.08 1.77 8.14 -51.92 -0.42 1.35 16 37 H 0.07 1.40 8.06 -51.93 -0.42 0.98 16 38 H 0.08 2.02 6.05 -51.93 -0.31 1.71 16 LS Contribution 289.22 15.07 4.36 4.36 Total: -1.00 -28.72 289.22 -5.82 -34.54 By element: Atomic # 1 Polarization: 12.10 SS G_CDS: -6.54 Total: 5.56 kcal Atomic # 6 Polarization: -16.60 SS G_CDS: 0.40 Total: -16.20 kcal Atomic # 7 Polarization: -39.65 SS G_CDS: 0.34 Total: -39.32 kcal Atomic # 8 Polarization: -7.55 SS G_CDS: -0.35 Total: -7.90 kcal Atomic # 14 Polarization: 22.98 SS G_CDS: -4.02 Total: 18.96 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -28.72 -5.82 -34.54 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083854431.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.811 kcal (2) G-P(sol) polarization free energy of solvation -28.722 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.911 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.820 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.542 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.731 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds