Wall clock time and date at job start Sun Mar 29 2020 21:56:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52988 * 1 3 3 C 1.53005 * 109.47113 * 2 1 4 4 H 1.09001 * 109.47291 * 55.11160 * 3 2 1 5 5 C 1.52997 * 109.47100 * 175.11026 * 3 2 1 6 6 O 1.42902 * 109.47362 * 55.03489 * 5 3 2 7 7 C 1.42898 * 114.00183 * 179.97438 * 6 5 3 8 8 N 1.46898 * 109.47115 * 295.11238 * 3 2 1 9 9 C 1.46897 * 111.00261 * 96.27579 * 8 3 2 10 10 C 1.53008 * 109.47037 * 88.04528 * 9 8 3 11 11 C 1.50704 * 115.54799 * 324.31455 * 10 9 8 12 12 H 1.07990 * 119.99936 * 279.64831 * 11 10 9 13 13 C 1.37878 * 119.99461 * 99.65491 * 11 10 9 14 14 N 1.31513 * 119.99844 * 172.08967 * 13 11 10 15 15 Si 1.86807 * 120.00198 * 352.08271 * 13 11 10 16 16 H 1.48499 * 109.46787 * 89.82905 * 15 13 11 17 17 H 1.48493 * 109.47041 * 209.83153 * 15 13 11 18 18 H 1.48497 * 109.47092 * 329.83184 * 15 13 11 19 19 C 1.52995 * 117.49554 * 178.65108 * 10 9 8 20 20 C 1.52999 * 60.02913 * 252.49775 * 19 10 9 21 21 H 1.08997 * 109.47367 * 185.88879 * 1 2 3 22 22 H 1.09005 * 109.47233 * 305.88383 * 1 2 3 23 23 H 1.09007 * 109.47501 * 65.88563 * 1 2 3 24 24 H 1.09004 * 109.47235 * 240.00649 * 2 1 3 25 25 H 1.08993 * 109.47785 * 119.99968 * 2 1 3 26 26 H 1.09000 * 109.47459 * 175.03048 * 5 3 2 27 27 H 1.09001 * 109.47600 * 295.02853 * 5 3 2 28 28 H 1.09000 * 109.47157 * 179.97438 * 7 6 5 29 29 H 1.08999 * 109.47206 * 299.99821 * 7 6 5 30 30 H 1.09002 * 109.47412 * 60.00163 * 7 6 5 31 31 H 1.00894 * 110.99834 * 332.31860 * 8 3 2 32 32 H 1.08998 * 109.46690 * 328.04992 * 9 8 3 33 33 H 1.09002 * 109.47361 * 208.04565 * 9 8 3 34 34 H 0.97003 * 120.00216 * 179.97438 * 14 13 11 35 35 H 1.09000 * 117.50427 * 359.97438 * 19 10 9 36 36 H 1.09008 * 117.49882 * 144.99745 * 19 10 9 37 37 H 1.08996 * 117.49803 * 107.50673 * 20 19 10 38 38 H 1.08998 * 117.49730 * 252.51864 * 20 19 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6068 1.9811 0.8430 5 6 3.5649 1.4443 0.1230 6 8 4.1276 0.6417 -0.9169 7 6 5.5549 0.5765 -0.8930 8 7 1.6490 2.1001 -1.2541 9 6 0.4122 2.8734 -1.0798 10 6 0.7570 4.2870 -0.6063 11 6 1.9329 4.3898 0.3307 12 1 1.8080 4.1678 1.3801 13 6 3.1679 4.7676 -0.1520 14 7 4.1547 5.0085 0.6833 15 14 3.4396 4.9370 -1.9924 16 1 3.1226 6.3252 -2.4138 17 1 4.8573 4.6338 -2.3135 18 1 2.5547 3.9868 -2.7130 19 6 -0.4016 5.2637 -0.3958 20 6 0.5359 5.4365 -1.5925 21 1 -0.3634 -1.0222 0.1054 22 1 -0.3634 0.6024 0.8327 23 1 -0.3634 0.4199 -0.9380 24 1 1.8933 -0.5137 -0.8901 25 1 1.8933 -0.5138 0.8899 26 1 3.9355 2.4655 0.0344 27 1 3.8518 1.0366 1.0923 28 1 5.9037 -0.0514 -1.7129 29 1 5.9663 1.5799 -1.0029 30 1 5.8835 0.1509 0.0552 31 1 1.5529 1.4278 -2.0002 32 1 -0.2196 2.3857 -0.3375 33 1 -0.1192 2.9280 -2.0299 34 1 5.0238 5.2739 0.3437 35 1 -1.4095 4.8995 -0.5950 36 1 -0.3134 5.9808 0.4204 37 1 0.1448 5.1859 -2.5785 38 1 1.2411 6.2671 -1.5635 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000083854431.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:56:35 Heat of formation + Delta-G solvation = -38.442982 kcal Electronic energy + Delta-G solvation = -17357.140220 eV Core-core repulsion = 14813.904001 eV Total energy + Delta-G solvation = -2543.236219 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.77577 -38.45857 -36.76546 -34.06304 -32.42357 -30.19827 -27.68490 -27.14126 -25.58689 -23.97756 -23.23713 -21.38292 -20.42780 -18.15009 -17.28723 -16.78671 -16.68845 -16.21228 -16.01412 -15.52940 -15.36907 -14.65083 -14.18413 -14.04606 -13.98317 -13.49281 -13.10823 -12.99157 -12.66169 -12.45428 -12.25710 -12.00362 -11.89560 -11.70369 -11.56631 -11.50848 -11.35659 -10.73616 -10.59133 -10.24942 -10.05827 -8.76336 -8.10748 -6.09190 1.44403 1.52629 1.79227 2.60816 3.07710 3.20201 3.35931 3.65941 4.05915 4.23919 4.28669 4.36959 4.44326 4.46968 4.54202 4.60075 4.73526 4.78832 4.82997 4.85916 4.93464 4.97471 4.98696 5.04338 5.14295 5.17586 5.33034 5.42083 5.42707 5.53999 5.57197 5.92481 6.34516 6.44630 6.56618 6.87319 7.05788 7.60676 9.02686 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.020536 B = 0.014695 C = 0.010191 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1363.119282 B = 1904.956481 C = 2746.989010 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.137 4.137 3 C 0.119 3.881 4 H 0.072 0.928 5 C 0.071 3.929 6 O -0.395 6.395 7 C 0.030 3.970 8 N -0.670 5.670 9 C 0.101 3.899 10 C -0.012 4.012 11 C -0.450 4.450 12 H 0.030 0.970 13 C 0.054 3.946 14 N -0.951 5.951 15 Si 0.936 3.064 16 H -0.306 1.306 17 H -0.328 1.328 18 H -0.214 1.214 19 C -0.173 4.173 20 C -0.209 4.209 21 H 0.067 0.933 22 H 0.047 0.953 23 H 0.055 0.945 24 H 0.069 0.931 25 H 0.061 0.939 26 H 0.046 0.954 27 H 0.032 0.968 28 H 0.105 0.895 29 H 0.016 0.984 30 H 0.046 0.954 31 H 0.337 0.663 32 H 0.047 0.953 33 H 0.065 0.935 34 H 0.254 0.746 35 H 0.105 0.895 36 H 0.070 0.930 37 H 0.096 0.904 38 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.649 -10.060 -4.436 12.361 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.177 4.177 3 C 0.008 3.992 4 H 0.090 0.910 5 C -0.006 4.006 6 O -0.315 6.315 7 C -0.067 4.067 8 N -0.300 5.300 9 C -0.028 4.028 10 C -0.013 4.013 11 C -0.487 4.487 12 H 0.049 0.951 13 C -0.143 4.143 14 N -0.592 5.592 15 Si 0.767 3.233 16 H -0.234 1.234 17 H -0.257 1.257 18 H -0.136 1.136 19 C -0.210 4.210 20 C -0.246 4.246 21 H 0.086 0.914 22 H 0.066 0.934 23 H 0.074 0.926 24 H 0.088 0.912 25 H 0.080 0.920 26 H 0.064 0.936 27 H 0.051 0.949 28 H 0.124 0.876 29 H 0.035 0.965 30 H 0.065 0.935 31 H 0.156 0.844 32 H 0.065 0.935 33 H 0.084 0.916 34 H 0.063 0.937 35 H 0.123 0.877 36 H 0.088 0.912 37 H 0.115 0.885 38 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -5.208 -9.586 -4.472 11.790 hybrid contribution 0.559 0.214 -0.138 0.614 sum -4.649 -9.372 -4.610 11.432 Atomic orbital electron populations 1.21812 0.94934 1.01965 1.01615 1.22077 0.96528 0.96591 1.02459 1.21356 0.91806 0.92768 0.93221 0.90983 1.22690 0.95349 0.94341 0.88242 1.87746 1.20153 1.70641 1.52910 1.22786 0.81364 1.00089 1.02460 1.59956 1.34875 1.28857 1.06318 1.21576 0.89569 0.92708 0.98929 1.19644 0.95426 0.89287 0.96985 1.20043 0.92175 1.43735 0.92778 0.95140 1.25257 0.95462 0.93655 0.99937 1.70077 1.03237 1.49845 1.36041 0.86056 0.75350 0.77266 0.84625 1.23442 1.25750 1.13577 1.22910 0.95160 1.04215 0.98758 1.22978 1.04046 1.02802 0.94790 0.91439 0.93375 0.92564 0.91201 0.92040 0.93584 0.94946 0.87645 0.96487 0.93545 0.84436 0.93507 0.91618 0.93725 0.87709 0.91157 0.88531 0.92370 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.57 8.52 71.98 0.61 -2.96 16 2 C -0.14 -3.98 5.01 30.59 0.15 -3.82 16 3 C 0.12 4.43 1.56 44.92 0.07 4.50 16 4 H 0.07 3.07 6.37 -2.39 -0.02 3.06 16 5 C 0.07 2.94 5.74 71.98 0.41 3.36 16 6 O -0.40 -14.84 9.87 -148.98 -1.47 -16.31 16 7 C 0.03 0.94 11.01 113.37 1.25 2.19 16 8 N -0.67 -25.15 4.04 -491.56 -1.98 -27.14 16 9 C 0.10 3.65 5.08 86.31 0.44 4.09 16 10 C -0.01 -0.52 1.47 -52.90 -0.08 -0.60 16 11 C -0.45 -24.19 6.67 25.60 0.17 -24.02 16 12 H 0.03 1.84 7.92 -2.92 -0.02 1.82 16 13 C 0.05 3.04 3.60 84.66 0.31 3.34 16 14 N -0.95 -58.36 13.82 21.45 0.30 -58.06 16 15 Si 0.94 47.78 23.67 68.60 1.62 49.41 16 16 H -0.31 -15.69 6.73 99.48 0.67 -15.02 16 17 H -0.33 -17.55 7.11 99.48 0.71 -16.84 16 18 H -0.21 -10.02 6.37 99.48 0.63 -9.39 16 19 C -0.17 -6.64 9.95 30.59 0.30 -6.34 16 20 C -0.21 -8.68 7.33 30.62 0.22 -8.45 16 21 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 22 H 0.05 1.24 7.76 -2.38 -0.02 1.22 16 23 H 0.06 1.33 6.84 -2.38 -0.02 1.32 16 24 H 0.07 1.99 7.61 -2.38 -0.02 1.98 16 25 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 26 H 0.05 2.33 5.73 -2.39 -0.01 2.32 16 27 H 0.03 1.29 8.14 -2.39 -0.02 1.27 16 28 H 0.11 2.65 8.14 -2.39 -0.02 2.63 16 29 H 0.02 0.59 8.14 -2.39 -0.02 0.57 16 30 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16 31 H 0.34 11.22 8.32 -89.70 -0.75 10.47 16 32 H 0.05 1.56 5.66 -2.39 -0.01 1.55 16 33 H 0.07 2.06 7.91 -2.39 -0.02 2.04 16 34 H 0.25 15.18 8.31 -92.71 -0.77 14.41 16 35 H 0.10 3.27 8.14 -2.39 -0.02 3.25 16 36 H 0.07 2.88 8.14 -2.38 -0.02 2.86 16 37 H 0.10 3.48 8.06 -2.39 -0.02 3.46 16 38 H 0.06 2.72 6.05 -2.39 -0.01 2.71 16 Total: -1.00 -63.26 289.22 2.50 -60.76 By element: Atomic # 1 Polarization: 19.89 SS G_CDS: 0.17 Total: 20.06 kcal Atomic # 6 Polarization: -32.58 SS G_CDS: 3.86 Total: -28.71 kcal Atomic # 7 Polarization: -83.51 SS G_CDS: -1.69 Total: -85.20 kcal Atomic # 8 Polarization: -14.84 SS G_CDS: -1.47 Total: -16.31 kcal Atomic # 14 Polarization: 47.78 SS G_CDS: 1.62 Total: 49.41 kcal Total: -63.26 2.50 -60.76 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083854431.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.320 kcal (2) G-P(sol) polarization free energy of solvation -63.258 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.938 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.495 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.763 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.443 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds