Wall clock time and date at job start Sun Mar 29 2020 21:35:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46904 * 110.99420 * 2 1 4 4 C 1.53001 * 109.47158 * 286.64236 * 3 2 1 5 5 C 1.53001 * 109.46954 * 185.69210 * 4 3 2 6 6 C 1.52995 * 109.47122 * 305.69271 * 4 3 2 7 7 O 1.42900 * 109.47032 * 65.69187 * 4 3 2 8 8 C 1.46895 * 111.00137 * 123.95030 * 2 1 3 9 9 C 1.53004 * 109.46940 * 74.01182 * 8 2 1 10 10 C 1.50700 * 115.55117 * 54.38364 * 9 8 2 11 11 H 1.07994 * 120.00159 * 214.65964 * 10 9 8 12 12 C 1.37876 * 119.99638 * 34.38336 * 10 9 8 13 13 N 1.31517 * 120.00683 * 358.47087 * 12 10 9 14 14 Si 1.86811 * 119.99799 * 178.47161 * 12 10 9 15 15 H 1.48495 * 109.46824 * 89.99909 * 14 12 10 16 16 H 1.48494 * 109.46813 * 210.00157 * 14 12 10 17 17 H 1.48503 * 109.46757 * 329.99604 * 14 12 10 18 18 C 1.53002 * 117.49591 * 200.05518 * 9 8 2 19 19 C 1.53000 * 117.49798 * 268.71280 * 9 8 2 20 20 H 1.08999 * 109.47417 * 309.20892 * 1 2 3 21 21 H 1.08996 * 109.47315 * 69.21783 * 1 2 3 22 22 H 1.09005 * 109.47013 * 189.21464 * 1 2 3 23 23 H 1.08995 * 109.47346 * 46.64634 * 3 2 1 24 24 H 1.09002 * 109.46958 * 166.64682 * 3 2 1 25 25 H 1.09002 * 109.47372 * 60.00215 * 5 4 3 26 26 H 1.08999 * 109.46724 * 180.02562 * 5 4 3 27 27 H 1.08997 * 109.47212 * 300.00054 * 5 4 3 28 28 H 1.08996 * 109.47750 * 65.11863 * 6 4 3 29 29 H 1.09000 * 109.47027 * 185.11642 * 6 4 3 30 30 H 1.09005 * 109.47553 * 305.11361 * 6 4 3 31 31 H 0.96705 * 113.99804 * 59.99708 * 7 4 3 32 32 H 1.09000 * 109.47427 * 314.00924 * 8 2 1 33 33 H 1.09003 * 109.47522 * 194.00974 * 8 2 1 34 34 H 0.96995 * 120.00049 * 184.98906 * 13 12 10 35 35 H 1.09007 * 117.49500 * 215.00238 * 18 9 8 36 36 H 1.08993 * 117.49944 * 0.02562 * 18 9 8 37 37 H 1.09006 * 117.49501 * 359.97438 * 19 9 8 38 38 H 1.08999 * 117.49850 * 144.97580 * 19 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3715 0.0000 4 6 1.7923 1.9957 -1.3821 5 6 2.4654 3.3690 -1.4253 6 6 2.4133 1.0896 -2.4470 7 8 0.3940 2.1423 -1.6378 8 6 1.9954 -0.7659 1.1376 9 6 1.8073 -2.2616 0.8762 10 6 2.3839 -2.7727 -0.4190 11 1 1.8838 -3.5638 -0.9577 12 6 3.5468 -2.2263 -0.9189 13 7 4.1367 -1.2388 -0.2813 14 14 4.2848 -2.8887 -2.5021 15 1 3.7295 -2.1401 -3.6581 16 1 5.7601 -2.7233 -2.4676 17 1 3.9513 -4.3293 -2.6388 18 6 1.8427 -3.1998 2.0843 19 6 0.5156 -2.9096 1.3788 20 1 -0.3634 0.6496 0.7963 21 1 -0.3634 0.3646 -0.9607 22 1 -0.3633 -1.0145 0.1646 23 1 1.4669 1.9635 0.7472 24 1 3.0590 1.3525 0.2373 25 1 3.5320 3.2572 -1.2302 26 1 2.3204 3.8138 -2.4097 27 1 2.0230 4.0145 -0.6666 28 1 1.8740 0.1430 -2.4782 29 1 2.3494 1.5763 -3.4203 30 1 3.4590 0.9041 -2.2016 31 1 -0.0655 2.7055 -1.0000 32 1 1.4591 -0.4851 2.0440 33 1 3.0565 -0.5494 1.2615 34 1 4.9134 -0.8064 -0.6692 35 1 2.2832 -4.1868 1.9423 36 1 1.9997 -2.7514 3.0652 37 1 -0.1999 -2.2703 1.8962 38 1 0.0827 -3.7053 0.7726 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000086273682.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:35:57 Heat of formation + Delta-G solvation = -16.840490 kcal Electronic energy + Delta-G solvation = -17440.990392 eV Core-core repulsion = 14898.690927 eV Total energy + Delta-G solvation = -2542.299465 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -38.44625 -36.76868 -34.10802 -31.97773 -31.71487 -26.79885 -26.33853 -26.15780 -25.15639 -21.45040 -21.08754 -19.63759 -18.74921 -16.17044 -15.89260 -14.96784 -14.49352 -14.48161 -13.90022 -13.70832 -13.27348 -12.73398 -12.23901 -12.10625 -11.81628 -11.47151 -11.33611 -11.24827 -11.08439 -10.91397 -10.68190 -10.57594 -10.38039 -10.31255 -10.11053 -9.81386 -9.61089 -8.98376 -8.76142 -8.49971 -7.98786 -6.92285 -5.76425 -3.84342 3.38781 3.44496 3.48692 4.53019 4.68821 4.92989 5.25102 5.40574 5.53433 5.64493 5.72336 5.90099 6.00524 6.20440 6.26438 6.28107 6.34849 6.47028 6.53359 6.55452 6.62851 6.70834 6.74583 6.77092 6.85180 7.01209 7.06807 7.27583 7.32057 7.41019 7.71398 8.11264 8.14140 8.37921 8.43267 8.68633 9.09872 9.75339 11.19580 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.021382 B = 0.013049 C = 0.009405 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1309.202610 B = 2145.165447 C = 2976.436987 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.484 5.484 3 C 0.044 3.956 4 C 0.133 3.867 5 C -0.175 4.175 6 C -0.117 4.117 7 O -0.557 6.557 8 C 0.105 3.895 9 C 0.069 3.931 10 C -0.466 4.466 11 H 0.051 0.949 12 C 0.090 3.910 13 N -0.873 5.873 14 Si 0.882 3.118 15 H -0.279 1.279 16 H -0.290 1.290 17 H -0.279 1.279 18 C -0.212 4.212 19 C -0.218 4.218 20 H -0.007 1.007 21 H 0.075 0.925 22 H 0.064 0.936 23 H 0.008 0.992 24 H 0.083 0.917 25 H 0.064 0.936 26 H 0.057 0.943 27 H 0.049 0.951 28 H 0.082 0.918 29 H 0.034 0.966 30 H 0.067 0.933 31 H 0.362 0.638 32 H -0.024 1.024 33 H 0.117 0.883 34 H 0.253 0.747 35 H 0.075 0.925 36 H 0.060 0.940 37 H 0.062 0.938 38 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.056 7.446 0.156 8.050 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 N -0.206 5.206 3 C -0.086 4.086 4 C 0.093 3.907 5 C -0.233 4.233 6 C -0.174 4.174 7 O -0.362 6.362 8 C -0.022 4.022 9 C 0.068 3.932 10 C -0.504 4.504 11 H 0.069 0.931 12 C -0.112 4.112 13 N -0.511 5.511 14 Si 0.711 3.289 15 H -0.205 1.205 16 H -0.216 1.216 17 H -0.204 1.204 18 C -0.251 4.251 19 C -0.256 4.256 20 H 0.011 0.989 21 H 0.094 0.906 22 H 0.083 0.917 23 H 0.026 0.974 24 H 0.102 0.898 25 H 0.083 0.917 26 H 0.076 0.924 27 H 0.068 0.932 28 H 0.101 0.899 29 H 0.053 0.947 30 H 0.086 0.914 31 H 0.207 0.793 32 H -0.006 1.006 33 H 0.135 0.865 34 H 0.064 0.936 35 H 0.094 0.906 36 H 0.079 0.921 37 H 0.080 0.920 38 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -2.523 6.892 -0.773 7.380 hybrid contribution -0.100 0.426 0.537 0.693 sum -2.623 7.318 -0.236 7.778 Atomic orbital electron populations 1.22674 0.89670 1.00618 0.99898 1.61481 1.05100 1.09593 1.44393 1.22673 1.01132 0.90512 0.94241 1.21313 0.80381 0.93024 0.96003 1.22469 1.01682 0.97603 1.01516 1.21493 1.01026 1.00129 0.94735 1.86600 1.21407 1.72217 1.55959 1.21852 1.01740 0.92415 0.86209 1.18987 0.91960 0.89753 0.92450 1.20281 1.06607 1.18675 1.04790 0.93051 1.24678 0.96069 0.94503 0.95972 1.69782 1.21112 1.23095 1.37122 0.86763 0.78102 0.79353 0.84701 1.20502 1.21583 1.20374 1.22998 1.01639 1.02698 0.97765 1.22923 0.91493 1.04856 1.06302 0.98868 0.90617 0.91744 0.97364 0.89823 0.91654 0.92375 0.93222 0.89864 0.94739 0.91379 0.79280 1.00567 0.86508 0.93603 0.90598 0.92122 0.91987 0.90991 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.39 8.86 60.06 0.53 0.93 16 2 N -0.48 -10.38 3.12 -242.92 -0.76 -11.14 16 3 C 0.04 0.82 4.30 -3.82 -0.02 0.80 16 4 C 0.13 2.25 1.15 -90.62 -0.10 2.15 16 5 C -0.17 -2.41 8.82 37.16 0.33 -2.08 16 6 C -0.12 -2.24 8.53 37.15 0.32 -1.93 16 7 O -0.56 -9.10 10.10 -35.23 -0.36 -9.46 16 8 C 0.11 2.45 3.92 -3.82 -0.01 2.44 16 9 C 0.07 1.71 1.75 -155.66 -0.27 1.43 16 10 C -0.47 -12.54 8.76 -34.44 -0.30 -12.84 16 11 H 0.05 1.42 7.81 -52.49 -0.41 1.01 16 12 C 0.09 2.36 5.28 -17.82 -0.09 2.26 16 13 N -0.87 -22.55 10.15 55.43 0.56 -21.99 16 14 Si 0.88 20.94 29.54 -169.99 -5.02 15.92 16 15 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 16 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 17 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 18 C -0.21 -4.88 9.96 -26.69 -0.27 -5.15 16 19 C -0.22 -4.87 8.39 -26.69 -0.22 -5.10 16 20 H -0.01 -0.13 7.91 -51.93 -0.41 -0.54 16 21 H 0.08 1.47 5.92 -51.93 -0.31 1.17 16 22 H 0.06 1.35 5.61 -51.93 -0.29 1.06 16 23 H 0.01 0.15 7.87 -51.93 -0.41 -0.26 16 24 H 0.08 1.67 7.67 -51.93 -0.40 1.28 16 25 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 26 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 27 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.08 1.87 7.64 -51.93 -0.40 1.47 16 29 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 31 H 0.36 4.60 9.05 45.56 0.41 5.02 16 32 H -0.02 -0.54 7.97 -51.93 -0.41 -0.95 16 33 H 0.12 2.96 5.44 -51.93 -0.28 2.68 16 34 H 0.25 6.36 8.32 -40.82 -0.34 6.02 16 35 H 0.08 1.75 8.14 -51.93 -0.42 1.33 16 36 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 37 H 0.06 1.30 7.78 -51.93 -0.40 0.89 16 38 H 0.07 1.60 8.14 -51.93 -0.42 1.17 16 LS Contribution 298.07 15.07 4.49 4.49 Total: -1.00 -26.88 298.07 -7.03 -33.90 By element: Atomic # 1 Polarization: 11.19 SS G_CDS: -5.83 Total: 5.36 kcal Atomic # 6 Polarization: -16.97 SS G_CDS: -0.12 Total: -17.09 kcal Atomic # 7 Polarization: -32.94 SS G_CDS: -0.20 Total: -33.13 kcal Atomic # 8 Polarization: -9.10 SS G_CDS: -0.36 Total: -9.46 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.92 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -26.88 -7.03 -33.90 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086273682.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.064 kcal (2) G-P(sol) polarization free energy of solvation -26.878 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.813 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.027 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.905 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.840 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds