Wall clock time and date at job start Sun Mar 29 2020 21:35:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46904 * 110.99420 * 2 1 4 4 C 1.53001 * 109.47158 * 286.64236 * 3 2 1 5 5 C 1.53001 * 109.46954 * 185.69210 * 4 3 2 6 6 C 1.52995 * 109.47122 * 305.69271 * 4 3 2 7 7 O 1.42900 * 109.47032 * 65.69187 * 4 3 2 8 8 C 1.46895 * 111.00137 * 123.95030 * 2 1 3 9 9 C 1.53004 * 109.46940 * 74.01182 * 8 2 1 10 10 C 1.50700 * 115.55117 * 54.38364 * 9 8 2 11 11 H 1.07994 * 120.00159 * 214.65964 * 10 9 8 12 12 C 1.37876 * 119.99638 * 34.38336 * 10 9 8 13 13 N 1.31517 * 120.00683 * 358.47087 * 12 10 9 14 14 Si 1.86811 * 119.99799 * 178.47161 * 12 10 9 15 15 H 1.48495 * 109.46824 * 89.99909 * 14 12 10 16 16 H 1.48494 * 109.46813 * 210.00157 * 14 12 10 17 17 H 1.48503 * 109.46757 * 329.99604 * 14 12 10 18 18 C 1.53002 * 117.49591 * 200.05518 * 9 8 2 19 19 C 1.53000 * 117.49798 * 268.71280 * 9 8 2 20 20 H 1.08999 * 109.47417 * 309.20892 * 1 2 3 21 21 H 1.08996 * 109.47315 * 69.21783 * 1 2 3 22 22 H 1.09005 * 109.47013 * 189.21464 * 1 2 3 23 23 H 1.08995 * 109.47346 * 46.64634 * 3 2 1 24 24 H 1.09002 * 109.46958 * 166.64682 * 3 2 1 25 25 H 1.09002 * 109.47372 * 60.00215 * 5 4 3 26 26 H 1.08999 * 109.46724 * 180.02562 * 5 4 3 27 27 H 1.08997 * 109.47212 * 300.00054 * 5 4 3 28 28 H 1.08996 * 109.47750 * 65.11863 * 6 4 3 29 29 H 1.09000 * 109.47027 * 185.11642 * 6 4 3 30 30 H 1.09005 * 109.47553 * 305.11361 * 6 4 3 31 31 H 0.96705 * 113.99804 * 59.99708 * 7 4 3 32 32 H 1.09000 * 109.47427 * 314.00924 * 8 2 1 33 33 H 1.09003 * 109.47522 * 194.00974 * 8 2 1 34 34 H 0.96995 * 120.00049 * 184.98906 * 13 12 10 35 35 H 1.09007 * 117.49500 * 215.00238 * 18 9 8 36 36 H 1.08993 * 117.49944 * 0.02562 * 18 9 8 37 37 H 1.09006 * 117.49501 * 359.97438 * 19 9 8 38 38 H 1.08999 * 117.49850 * 144.97580 * 19 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3715 0.0000 4 6 1.7923 1.9957 -1.3821 5 6 2.4654 3.3690 -1.4253 6 6 2.4133 1.0896 -2.4470 7 8 0.3940 2.1423 -1.6378 8 6 1.9954 -0.7659 1.1376 9 6 1.8073 -2.2616 0.8762 10 6 2.3839 -2.7727 -0.4190 11 1 1.8838 -3.5638 -0.9577 12 6 3.5468 -2.2263 -0.9189 13 7 4.1367 -1.2388 -0.2813 14 14 4.2848 -2.8887 -2.5021 15 1 3.7295 -2.1401 -3.6581 16 1 5.7601 -2.7233 -2.4676 17 1 3.9513 -4.3293 -2.6388 18 6 1.8427 -3.1998 2.0843 19 6 0.5156 -2.9096 1.3788 20 1 -0.3634 0.6496 0.7963 21 1 -0.3634 0.3646 -0.9607 22 1 -0.3633 -1.0145 0.1646 23 1 1.4669 1.9635 0.7472 24 1 3.0590 1.3525 0.2373 25 1 3.5320 3.2572 -1.2302 26 1 2.3204 3.8138 -2.4097 27 1 2.0230 4.0145 -0.6666 28 1 1.8740 0.1430 -2.4782 29 1 2.3494 1.5763 -3.4203 30 1 3.4590 0.9041 -2.2016 31 1 -0.0655 2.7055 -1.0000 32 1 1.4591 -0.4851 2.0440 33 1 3.0565 -0.5494 1.2615 34 1 4.9134 -0.8064 -0.6692 35 1 2.2832 -4.1868 1.9423 36 1 1.9997 -2.7514 3.0652 37 1 -0.1999 -2.2703 1.8962 38 1 0.0827 -3.7053 0.7726 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000086273682.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:35:57 Heat of formation + Delta-G solvation = -33.111766 kcal Electronic energy + Delta-G solvation = -17441.695967 eV Core-core repulsion = 14898.690927 eV Total energy + Delta-G solvation = -2543.005041 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.93371 -38.45171 -35.71079 -33.96641 -33.07408 -28.25414 -27.95574 -27.70468 -27.10371 -23.06192 -22.90046 -21.01706 -20.65178 -18.01441 -17.32217 -16.65474 -16.21777 -16.03430 -15.52534 -15.37700 -14.85482 -14.42631 -13.81691 -13.46039 -13.21351 -13.18953 -12.91367 -12.87272 -12.80487 -12.62812 -12.37611 -12.25131 -12.11556 -12.02586 -11.73029 -11.48860 -11.32379 -10.73829 -10.62235 -10.23815 -9.91067 -8.53240 -7.75623 -5.89477 1.46537 1.50041 1.55171 2.55788 3.13535 3.42966 3.58630 3.81378 4.10666 4.15013 4.30641 4.41481 4.57491 4.62854 4.74155 4.80862 4.84857 4.90142 4.95116 5.00611 5.03314 5.07041 5.11384 5.18188 5.22785 5.33130 5.48777 5.52576 5.58809 5.68197 5.76982 6.16070 6.54270 6.75718 6.86912 7.02347 7.09099 7.70757 9.16947 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.021382 B = 0.013049 C = 0.009405 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1309.202610 B = 2145.165447 C = 2976.436987 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 N -0.503 5.503 3 C 0.047 3.953 4 C 0.139 3.861 5 C -0.166 4.166 6 C -0.111 4.111 7 O -0.566 6.566 8 C 0.118 3.882 9 C 0.043 3.957 10 C -0.490 4.490 11 H 0.031 0.969 12 C 0.064 3.936 13 N -0.875 5.875 14 Si 0.924 3.076 15 H -0.279 1.279 16 H -0.285 1.285 17 H -0.284 1.284 18 C -0.211 4.211 19 C -0.200 4.200 20 H 0.011 0.989 21 H 0.078 0.922 22 H 0.048 0.952 23 H 0.026 0.974 24 H 0.066 0.934 25 H 0.064 0.936 26 H 0.066 0.934 27 H 0.071 0.929 28 H 0.045 0.955 29 H 0.048 0.952 30 H 0.053 0.947 31 H 0.380 0.620 32 H -0.020 1.020 33 H 0.095 0.905 34 H 0.254 0.746 35 H 0.068 0.932 36 H 0.074 0.926 37 H 0.079 0.921 38 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.534 8.899 0.288 9.579 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 N -0.225 5.225 3 C -0.082 4.082 4 C 0.099 3.901 5 C -0.224 4.224 6 C -0.169 4.169 7 O -0.374 6.374 8 C -0.010 4.010 9 C 0.042 3.958 10 C -0.527 4.527 11 H 0.050 0.950 12 C -0.138 4.138 13 N -0.512 5.512 14 Si 0.752 3.248 15 H -0.205 1.205 16 H -0.211 1.211 17 H -0.209 1.209 18 C -0.250 4.250 19 C -0.238 4.238 20 H 0.029 0.971 21 H 0.097 0.903 22 H 0.067 0.933 23 H 0.044 0.956 24 H 0.085 0.915 25 H 0.083 0.917 26 H 0.085 0.915 27 H 0.090 0.910 28 H 0.064 0.936 29 H 0.067 0.933 30 H 0.072 0.928 31 H 0.228 0.772 32 H -0.002 1.002 33 H 0.113 0.887 34 H 0.064 0.936 35 H 0.087 0.913 36 H 0.093 0.907 37 H 0.097 0.903 38 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -3.009 8.359 -0.629 8.906 hybrid contribution 0.021 -0.037 0.496 0.498 sum -2.989 8.321 -0.133 8.843 Atomic orbital electron populations 1.22573 0.88709 1.00068 1.00668 1.61421 1.06084 1.11183 1.43772 1.22681 1.00120 0.89471 0.95956 1.21151 0.81064 0.94132 0.93784 1.22358 1.01392 0.95718 1.02889 1.21379 0.99809 0.99103 0.96560 1.86553 1.21074 1.72977 1.56756 1.21576 1.00465 0.91953 0.87027 1.19094 0.93756 0.90797 0.92137 1.20362 1.07330 1.18887 1.06139 0.95035 1.25063 0.96203 0.94774 0.97728 1.69877 1.20934 1.22984 1.37413 0.86112 0.77654 0.78443 0.82549 1.20549 1.21060 1.20949 1.23001 1.02024 1.02043 0.97917 1.22871 0.91132 1.04317 1.05435 0.97051 0.90341 0.93305 0.95579 0.91544 0.91728 0.91455 0.91002 0.93573 0.93323 0.92780 0.77177 1.00209 0.88741 0.93587 0.91314 0.90707 0.90263 0.91326 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.07 8.86 127.69 1.13 2.20 16 2 N -0.50 -21.16 3.12 -922.45 -2.88 -24.04 16 3 C 0.05 1.67 4.30 86.30 0.37 2.04 16 4 C 0.14 4.44 1.15 -10.79 -0.01 4.42 16 5 C -0.17 -4.08 8.82 71.98 0.63 -3.44 16 6 C -0.11 -4.20 8.53 71.98 0.61 -3.59 16 7 O -0.57 -17.04 10.10 -148.98 -1.50 -18.55 16 8 C 0.12 5.43 3.92 86.31 0.34 5.76 16 9 C 0.04 2.11 1.75 -52.93 -0.09 2.01 16 10 C -0.49 -26.69 8.76 25.60 0.22 -26.46 16 11 H 0.03 1.79 7.81 -2.91 -0.02 1.77 16 12 C 0.06 3.39 5.28 84.65 0.45 3.83 16 13 N -0.87 -45.36 10.15 21.45 0.22 -45.14 16 14 Si 0.92 43.27 29.54 68.60 2.03 45.30 16 15 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 16 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 17 H -0.28 -13.45 7.11 99.48 0.71 -12.74 16 18 C -0.21 -9.56 9.96 30.62 0.30 -9.26 16 19 C -0.20 -8.75 8.39 30.62 0.26 -8.49 16 20 H 0.01 0.38 7.91 -2.39 -0.02 0.36 16 21 H 0.08 2.94 5.92 -2.39 -0.01 2.92 16 22 H 0.05 1.99 5.61 -2.38 -0.01 1.98 16 23 H 0.03 0.84 7.87 -2.39 -0.02 0.83 16 24 H 0.07 2.61 7.67 -2.39 -0.02 2.59 16 25 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 26 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 27 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 28 H 0.05 2.07 7.64 -2.39 -0.02 2.05 16 29 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 30 H 0.05 2.15 8.14 -2.38 -0.02 2.13 16 31 H 0.38 8.35 9.05 -74.05 -0.67 7.68 16 32 H -0.02 -0.89 7.97 -2.39 -0.02 -0.91 16 33 H 0.09 4.79 5.44 -2.39 -0.01 4.78 16 34 H 0.25 12.76 8.32 -92.71 -0.77 11.99 16 35 H 0.07 3.16 8.14 -2.38 -0.02 3.14 16 36 H 0.07 3.13 8.14 -2.39 -0.02 3.11 16 37 H 0.08 3.16 7.78 -2.38 -0.02 3.14 16 38 H 0.07 3.01 8.14 -2.39 -0.02 2.99 16 Total: -1.00 -56.47 298.07 2.43 -54.04 By element: Atomic # 1 Polarization: 19.01 SS G_CDS: 0.35 Total: 19.36 kcal Atomic # 6 Polarization: -35.18 SS G_CDS: 4.22 Total: -30.96 kcal Atomic # 7 Polarization: -66.52 SS G_CDS: -2.66 Total: -69.19 kcal Atomic # 8 Polarization: -17.04 SS G_CDS: -1.50 Total: -18.55 kcal Atomic # 14 Polarization: 43.27 SS G_CDS: 2.03 Total: 45.30 kcal Total: -56.47 2.43 -54.04 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086273682.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.929 kcal (2) G-P(sol) polarization free energy of solvation -56.466 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.537 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.425 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.040 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.112 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds