Wall clock time and date at job start Sun Mar 29 2020 21:53:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53002 * 109.47055 * 2 1 4 4 H 1.09008 * 109.47412 * 306.88480 * 3 2 1 5 5 C 1.50700 * 109.46971 * 186.88824 * 3 2 1 6 6 H 1.08004 * 120.00029 * 244.27289 * 5 3 2 7 7 C 1.37876 * 120.00276 * 64.27776 * 5 3 2 8 8 N 1.31511 * 120.00185 * 192.57974 * 7 5 3 9 9 Si 1.86800 * 119.99820 * 12.57426 * 7 5 3 10 10 H 1.48506 * 109.47126 * 94.07147 * 9 7 5 11 11 H 1.48498 * 109.47164 * 214.06856 * 9 7 5 12 12 H 1.48495 * 109.47215 * 334.06756 * 9 7 5 13 13 N 1.46898 * 109.47164 * 66.88723 * 3 2 1 14 14 C 1.46897 * 110.99915 * 269.79575 * 13 3 2 15 15 H 1.09003 * 109.47561 * 30.71117 * 14 13 3 16 16 C 1.53002 * 109.47214 * 150.70802 * 14 13 3 17 17 O 1.42904 * 109.46856 * 64.99998 * 16 14 13 18 18 C 1.42900 * 114.00126 * 180.02562 * 17 16 14 19 19 C 1.53003 * 109.47537 * 270.71190 * 14 13 3 20 20 C 1.52997 * 117.50042 * 180.02562 * 19 14 13 21 21 C 1.52999 * 60.02916 * 252.49710 * 20 19 14 22 22 H 1.08992 * 109.47283 * 182.41511 * 1 2 3 23 23 H 1.09006 * 109.47323 * 302.41353 * 1 2 3 24 24 H 1.09001 * 109.47694 * 62.41230 * 1 2 3 25 25 H 1.09003 * 109.46767 * 240.00428 * 2 1 3 26 26 H 1.08998 * 109.47156 * 120.00069 * 2 1 3 27 27 H 0.97001 * 120.00217 * 179.97438 * 8 7 5 28 28 H 1.00896 * 110.99803 * 33.74756 * 13 3 2 29 29 H 1.08998 * 109.47578 * 184.99582 * 16 14 13 30 30 H 1.08995 * 109.47386 * 305.00207 * 16 14 13 31 31 H 1.08994 * 109.46858 * 60.00274 * 18 17 16 32 32 H 1.09005 * 109.46942 * 180.02562 * 18 17 16 33 33 H 1.08999 * 109.47232 * 300.00072 * 18 17 16 34 34 H 1.08999 * 115.54374 * 325.66754 * 19 14 13 35 35 H 1.08998 * 117.49968 * 359.97438 * 20 19 14 36 36 H 1.08998 * 117.49951 * 144.99448 * 20 19 14 37 37 H 1.09002 * 117.49959 * 107.50689 * 21 20 19 38 38 H 1.09001 * 117.49877 * 252.52334 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5795 1.9908 -0.8220 5 6 3.5373 1.4459 -0.1704 6 1 4.1701 1.8191 0.6213 7 6 4.0995 0.9727 -1.3370 8 7 5.3929 0.7426 -1.3975 9 14 3.0239 0.6582 -2.8316 10 1 3.0319 1.8569 -3.7082 11 1 3.5508 -0.5087 -3.5839 12 1 1.6342 0.3765 -2.3908 13 7 1.6906 2.0854 1.2738 14 6 0.3784 2.7403 1.1904 15 1 -0.2555 2.1963 0.4901 16 6 -0.2774 2.7464 2.5728 17 8 0.4937 3.5566 3.4622 18 6 -0.0347 3.6295 4.7879 19 6 0.5568 4.1801 0.7043 20 6 -0.7026 5.0352 0.5512 21 6 0.0308 4.5255 -0.6911 22 1 -0.3633 -1.0267 0.0433 23 1 -0.3634 0.5509 0.8676 24 1 -0.3634 0.4759 -0.9108 25 1 1.8932 -0.5138 -0.8901 26 1 1.8933 -0.5138 0.8900 27 1 5.7884 0.4093 -2.2182 28 1 1.7156 1.4212 2.0328 29 1 -1.2862 3.1516 2.4947 30 1 -0.3238 1.7276 2.9574 31 1 -0.0757 2.6290 5.2182 32 1 0.6069 4.2630 5.4005 33 1 -1.0387 4.0528 4.7560 34 1 1.4665 4.6794 1.0377 35 1 -1.6584 4.5720 0.7964 36 1 -0.6213 6.0970 0.7834 37 1 -0.4424 3.7272 -1.2628 38 1 0.5951 5.2520 -1.2759 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000087480209.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:53:29 Heat of formation + Delta-G solvation = -15.478301 kcal Electronic energy + Delta-G solvation = -16860.254316 eV Core-core repulsion = 14318.013920 eV Total energy + Delta-G solvation = -2542.240396 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -38.76993 -36.77987 -35.75257 -32.36474 -31.26310 -28.96561 -26.78666 -25.50961 -23.26522 -22.37332 -21.91977 -19.94627 -19.40065 -16.75445 -16.25520 -15.83338 -15.18193 -15.01727 -14.82531 -13.93631 -13.76258 -13.36867 -12.96276 -12.68789 -12.19762 -12.03519 -11.60040 -11.55669 -11.36222 -11.15006 -10.87364 -10.74736 -10.57741 -10.37843 -9.98111 -9.83123 -9.53022 -9.45574 -9.25295 -9.13373 -8.33805 -7.24936 -5.98477 -3.90939 3.31718 3.40625 3.43109 3.99690 4.24070 4.49053 4.89501 5.10868 5.18631 5.28913 5.34405 5.37903 5.45656 5.52946 5.69379 5.73109 5.79426 5.81971 5.86575 5.91045 5.95862 6.02754 6.17144 6.31284 6.44041 6.48208 6.60883 6.78375 6.83509 6.97214 7.26284 7.38669 7.83103 8.05074 8.46792 8.80234 9.18199 9.67604 11.15250 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.027525 B = 0.008640 C = 0.008122 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1017.003559 B = 3239.858616 C = 3446.658854 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.156 4.156 3 C 0.192 3.808 4 H 0.031 0.969 5 C -0.494 4.494 6 H 0.080 0.920 7 C 0.069 3.931 8 N -0.899 5.899 9 Si 0.858 3.142 10 H -0.282 1.282 11 H -0.290 1.290 12 H -0.253 1.253 13 N -0.657 5.657 14 C 0.108 3.892 15 H 0.062 0.938 16 C 0.064 3.936 17 O -0.365 6.365 18 C 0.030 3.970 19 C -0.108 4.108 20 C -0.188 4.188 21 C -0.186 4.186 22 H 0.040 0.960 23 H 0.048 0.952 24 H 0.045 0.955 25 H 0.062 0.938 26 H 0.055 0.945 27 H 0.261 0.739 28 H 0.331 0.669 29 H 0.045 0.955 30 H 0.043 0.957 31 H 0.035 0.965 32 H 0.082 0.918 33 H 0.033 0.967 34 H 0.114 0.886 35 H 0.083 0.917 36 H 0.088 0.912 37 H 0.086 0.914 38 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.336 3.670 6.405 16.125 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.196 4.196 3 C 0.083 3.917 4 H 0.048 0.952 5 C -0.532 4.532 6 H 0.098 0.902 7 C -0.131 4.131 8 N -0.538 5.538 9 Si 0.686 3.314 10 H -0.209 1.209 11 H -0.216 1.216 12 H -0.177 1.177 13 N -0.287 5.287 14 C -0.002 4.002 15 H 0.079 0.921 16 C -0.013 4.013 17 O -0.283 6.283 18 C -0.067 4.067 19 C -0.127 4.127 20 C -0.226 4.226 21 C -0.223 4.223 22 H 0.059 0.941 23 H 0.067 0.933 24 H 0.064 0.936 25 H 0.080 0.920 26 H 0.074 0.926 27 H 0.071 0.929 28 H 0.149 0.851 29 H 0.063 0.937 30 H 0.061 0.939 31 H 0.054 0.946 32 H 0.101 0.899 33 H 0.052 0.948 34 H 0.132 0.868 35 H 0.101 0.899 36 H 0.106 0.894 37 H 0.104 0.896 38 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -13.659 4.269 6.094 15.554 hybrid contribution -1.339 -1.158 -0.865 1.971 sum -14.998 3.111 5.229 16.185 Atomic orbital electron populations 1.22087 0.98831 1.00138 1.00609 1.22747 0.92663 1.02269 1.01908 1.19616 0.96879 0.87674 0.87487 0.95155 1.20974 0.89305 1.40312 1.02634 0.90196 1.24898 0.94686 0.95086 0.98474 1.69949 1.11037 1.45581 1.27211 0.87315 0.82347 0.77803 0.83930 1.20853 1.21617 1.17687 1.60465 1.25301 1.36114 1.06827 1.21404 0.91942 0.94027 0.92837 0.92058 1.22778 0.94063 0.93661 0.90804 1.88080 1.50661 1.69920 1.19598 1.22704 0.98486 1.00429 0.85109 1.22184 0.97333 0.95488 0.97702 1.22872 0.96578 0.99653 1.03492 1.22981 1.04370 1.03520 0.91445 0.94069 0.93286 0.93559 0.91993 0.92625 0.92914 0.85074 0.93675 0.93871 0.94589 0.89915 0.94829 0.86819 0.89871 0.89378 0.89557 0.89136 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.73 8.66 37.16 0.32 -2.41 16 2 C -0.16 -3.30 4.54 -26.73 -0.12 -3.42 16 3 C 0.19 4.46 1.65 -68.86 -0.11 4.35 16 4 H 0.03 0.74 6.47 -51.92 -0.34 0.40 16 5 C -0.49 -13.99 9.30 -34.44 -0.32 -14.31 16 6 H 0.08 2.52 8.06 -52.48 -0.42 2.10 16 7 C 0.07 2.01 5.36 -17.82 -0.10 1.92 16 8 N -0.90 -27.80 13.96 55.43 0.77 -27.03 16 9 Si 0.86 21.30 25.71 -169.99 -4.37 16.93 16 10 H -0.28 -7.05 7.11 56.52 0.40 -6.65 16 11 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 12 H -0.25 -5.80 5.33 56.52 0.30 -5.50 16 13 N -0.66 -13.47 5.94 -100.95 -0.60 -14.07 16 14 C 0.11 1.84 1.45 -67.71 -0.10 1.74 16 15 H 0.06 1.04 4.86 -51.93 -0.25 0.78 16 16 C 0.06 0.92 5.09 37.16 0.19 1.11 16 17 O -0.36 -5.63 10.14 -35.23 -0.36 -5.99 16 18 C 0.03 0.34 11.01 101.05 1.11 1.45 16 19 C -0.11 -1.84 4.91 -90.59 -0.44 -2.29 16 20 C -0.19 -2.61 9.79 -26.73 -0.26 -2.87 16 21 C -0.19 -2.93 10.18 -26.70 -0.27 -3.20 16 22 H 0.04 0.63 8.14 -51.93 -0.42 0.20 16 23 H 0.05 0.76 5.55 -51.93 -0.29 0.47 16 24 H 0.05 0.79 8.10 -51.93 -0.42 0.37 16 25 H 0.06 1.40 4.70 -51.93 -0.24 1.16 16 26 H 0.06 1.15 7.98 -51.93 -0.41 0.74 16 27 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 28 H 0.33 6.52 7.78 -39.29 -0.31 6.22 16 29 H 0.05 0.56 7.47 -51.93 -0.39 0.18 16 30 H 0.04 0.58 8.02 -51.93 -0.42 0.16 16 31 H 0.04 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.08 0.84 8.14 -51.93 -0.42 0.41 16 33 H 0.03 0.33 8.14 -51.93 -0.42 -0.10 16 34 H 0.11 2.20 8.14 -51.93 -0.42 1.77 16 35 H 0.08 1.04 7.66 -51.93 -0.40 0.64 16 36 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 37 H 0.09 1.34 8.05 -51.93 -0.42 0.93 16 38 H 0.09 1.39 8.14 -51.93 -0.42 0.97 16 LS Contribution 297.25 15.07 4.48 4.48 Total: -1.00 -30.59 297.25 -6.68 -37.27 By element: Atomic # 1 Polarization: 12.84 SS G_CDS: -6.50 Total: 6.34 kcal Atomic # 6 Polarization: -17.83 SS G_CDS: -0.10 Total: -17.93 kcal Atomic # 7 Polarization: -41.27 SS G_CDS: 0.17 Total: -41.10 kcal Atomic # 8 Polarization: -5.63 SS G_CDS: -0.36 Total: -5.99 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -4.37 Total: 16.93 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -30.59 -6.68 -37.27 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087480209.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.787 kcal (2) G-P(sol) polarization free energy of solvation -30.587 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.800 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.678 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.265 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.478 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds