Wall clock time and date at job start Sun Mar 29 2020 21:53:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53002 * 109.47055 * 2 1 4 4 H 1.09008 * 109.47412 * 306.88480 * 3 2 1 5 5 C 1.50700 * 109.46971 * 186.88824 * 3 2 1 6 6 H 1.08004 * 120.00029 * 244.27289 * 5 3 2 7 7 C 1.37876 * 120.00276 * 64.27776 * 5 3 2 8 8 N 1.31511 * 120.00185 * 192.57974 * 7 5 3 9 9 Si 1.86800 * 119.99820 * 12.57426 * 7 5 3 10 10 H 1.48506 * 109.47126 * 94.07147 * 9 7 5 11 11 H 1.48498 * 109.47164 * 214.06856 * 9 7 5 12 12 H 1.48495 * 109.47215 * 334.06756 * 9 7 5 13 13 N 1.46898 * 109.47164 * 66.88723 * 3 2 1 14 14 C 1.46897 * 110.99915 * 269.79575 * 13 3 2 15 15 H 1.09003 * 109.47561 * 30.71117 * 14 13 3 16 16 C 1.53002 * 109.47214 * 150.70802 * 14 13 3 17 17 O 1.42904 * 109.46856 * 64.99998 * 16 14 13 18 18 C 1.42900 * 114.00126 * 180.02562 * 17 16 14 19 19 C 1.53003 * 109.47537 * 270.71190 * 14 13 3 20 20 C 1.52997 * 117.50042 * 180.02562 * 19 14 13 21 21 C 1.52999 * 60.02916 * 252.49710 * 20 19 14 22 22 H 1.08992 * 109.47283 * 182.41511 * 1 2 3 23 23 H 1.09006 * 109.47323 * 302.41353 * 1 2 3 24 24 H 1.09001 * 109.47694 * 62.41230 * 1 2 3 25 25 H 1.09003 * 109.46767 * 240.00428 * 2 1 3 26 26 H 1.08998 * 109.47156 * 120.00069 * 2 1 3 27 27 H 0.97001 * 120.00217 * 179.97438 * 8 7 5 28 28 H 1.00896 * 110.99803 * 33.74756 * 13 3 2 29 29 H 1.08998 * 109.47578 * 184.99582 * 16 14 13 30 30 H 1.08995 * 109.47386 * 305.00207 * 16 14 13 31 31 H 1.08994 * 109.46858 * 60.00274 * 18 17 16 32 32 H 1.09005 * 109.46942 * 180.02562 * 18 17 16 33 33 H 1.08999 * 109.47232 * 300.00072 * 18 17 16 34 34 H 1.08999 * 115.54374 * 325.66754 * 19 14 13 35 35 H 1.08998 * 117.49968 * 359.97438 * 20 19 14 36 36 H 1.08998 * 117.49951 * 144.99448 * 20 19 14 37 37 H 1.09002 * 117.49959 * 107.50689 * 21 20 19 38 38 H 1.09001 * 117.49877 * 252.52334 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5795 1.9908 -0.8220 5 6 3.5373 1.4459 -0.1704 6 1 4.1701 1.8191 0.6213 7 6 4.0995 0.9727 -1.3370 8 7 5.3929 0.7426 -1.3975 9 14 3.0239 0.6582 -2.8316 10 1 3.0319 1.8569 -3.7082 11 1 3.5508 -0.5087 -3.5839 12 1 1.6342 0.3765 -2.3908 13 7 1.6906 2.0854 1.2738 14 6 0.3784 2.7403 1.1904 15 1 -0.2555 2.1963 0.4901 16 6 -0.2774 2.7464 2.5728 17 8 0.4937 3.5566 3.4622 18 6 -0.0347 3.6295 4.7879 19 6 0.5568 4.1801 0.7043 20 6 -0.7026 5.0352 0.5512 21 6 0.0308 4.5255 -0.6911 22 1 -0.3633 -1.0267 0.0433 23 1 -0.3634 0.5509 0.8676 24 1 -0.3634 0.4759 -0.9108 25 1 1.8932 -0.5138 -0.8901 26 1 1.8933 -0.5138 0.8900 27 1 5.7884 0.4093 -2.2182 28 1 1.7156 1.4212 2.0328 29 1 -1.2862 3.1516 2.4947 30 1 -0.3238 1.7276 2.9574 31 1 -0.0757 2.6290 5.2182 32 1 0.6069 4.2630 5.4005 33 1 -1.0387 4.0528 4.7560 34 1 1.4665 4.6794 1.0377 35 1 -1.6584 4.5720 0.7964 36 1 -0.6213 6.0970 0.7834 37 1 -0.4424 3.7272 -1.2628 38 1 0.5951 5.2520 -1.2759 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000087480209.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:53:29 Heat of formation + Delta-G solvation = -37.446916 kcal Electronic energy + Delta-G solvation = -16861.206947 eV Core-core repulsion = 14318.013920 eV Total energy + Delta-G solvation = -2543.193027 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.06716 -37.99735 -37.21643 -34.40980 -32.79240 -30.46081 -28.27307 -26.74754 -24.59230 -24.01521 -23.08291 -21.73588 -20.70819 -18.78441 -17.48994 -17.04206 -16.67430 -16.34916 -16.21542 -15.44866 -15.21021 -14.87144 -14.60899 -14.12687 -13.68088 -13.47151 -13.10942 -13.00039 -12.64800 -12.39908 -12.36279 -12.28413 -12.13828 -11.84036 -11.68402 -11.27907 -11.24806 -11.03565 -10.63378 -10.51342 -10.44752 -8.84389 -8.23529 -6.20816 1.33753 1.37913 1.46652 2.38277 2.94037 3.07263 3.10670 3.52414 3.93332 4.03554 4.22900 4.28199 4.35901 4.38444 4.45396 4.50078 4.55518 4.65341 4.66406 4.69848 4.82077 4.86435 4.92791 4.98787 5.10857 5.14197 5.18794 5.23048 5.31153 5.52499 5.57996 5.76452 6.13422 6.42117 6.82680 6.84793 6.89253 7.42824 8.94403 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.027525 B = 0.008640 C = 0.008122 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1017.003559 B = 3239.858616 C = 3446.658854 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.155 4.155 3 C 0.203 3.797 4 H 0.027 0.973 5 C -0.501 4.501 6 H 0.027 0.973 7 C 0.009 3.991 8 N -0.952 5.952 9 Si 0.927 3.073 10 H -0.283 1.283 11 H -0.289 1.289 12 H -0.219 1.219 13 N -0.674 5.674 14 C 0.109 3.891 15 H 0.072 0.928 16 C 0.067 3.933 17 O -0.398 6.398 18 C 0.025 3.975 19 C -0.136 4.136 20 C -0.154 4.154 21 C -0.197 4.197 22 H 0.064 0.936 23 H 0.066 0.934 24 H 0.050 0.950 25 H 0.045 0.955 26 H 0.051 0.949 27 H 0.262 0.738 28 H 0.333 0.667 29 H 0.072 0.928 30 H 0.054 0.946 31 H 0.045 0.955 32 H 0.087 0.913 33 H 0.053 0.947 34 H 0.078 0.922 35 H 0.107 0.893 36 H 0.099 0.901 37 H 0.091 0.909 38 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.144 3.509 6.356 19.543 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.195 4.195 3 C 0.093 3.907 4 H 0.045 0.955 5 C -0.539 4.539 6 H 0.045 0.955 7 C -0.187 4.187 8 N -0.593 5.593 9 Si 0.751 3.249 10 H -0.209 1.209 11 H -0.215 1.215 12 H -0.141 1.141 13 N -0.305 5.305 14 C 0.000 4.000 15 H 0.089 0.911 16 C -0.009 4.009 17 O -0.317 6.317 18 C -0.071 4.071 19 C -0.155 4.155 20 C -0.191 4.191 21 C -0.234 4.234 22 H 0.083 0.917 23 H 0.085 0.915 24 H 0.069 0.931 25 H 0.064 0.936 26 H 0.070 0.930 27 H 0.071 0.929 28 H 0.151 0.849 29 H 0.090 0.910 30 H 0.072 0.928 31 H 0.063 0.937 32 H 0.106 0.894 33 H 0.071 0.929 34 H 0.097 0.903 35 H 0.126 0.874 36 H 0.117 0.883 37 H 0.110 0.890 38 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -17.500 4.118 6.075 18.977 hybrid contribution -0.059 -1.023 -0.713 1.248 sum -17.559 3.095 5.362 18.619 Atomic orbital electron populations 1.21999 0.95034 1.02151 1.01677 1.22588 0.96016 0.99858 1.00998 1.19329 0.93158 0.89481 0.88740 0.95529 1.21306 0.92126 1.39270 1.01234 0.95497 1.25784 0.96011 0.95026 1.01861 1.70116 1.13435 1.47545 1.28197 0.86214 0.82033 0.77431 0.79196 1.20904 1.21510 1.14149 1.60272 1.28578 1.36071 1.05595 1.21463 0.90149 0.93319 0.95104 0.91086 1.22759 0.94600 0.94460 0.89122 1.88037 1.52001 1.70303 1.21390 1.22880 0.99539 1.01349 0.83366 1.22068 0.97996 0.96192 0.99275 1.22944 0.95801 0.99856 1.00479 1.23061 1.04942 1.03913 0.91455 0.91704 0.91546 0.93109 0.93618 0.93005 0.92900 0.84858 0.90962 0.92818 0.93670 0.89433 0.92861 0.90344 0.87447 0.88262 0.89024 0.89612 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.57 8.66 71.98 0.62 -3.95 16 2 C -0.16 -6.26 4.54 30.59 0.14 -6.12 16 3 C 0.20 9.34 1.65 44.17 0.07 9.41 16 4 H 0.03 1.26 6.47 -2.38 -0.02 1.24 16 5 C -0.50 -29.49 9.30 25.60 0.24 -29.26 16 6 H 0.03 1.81 8.06 -2.91 -0.02 1.79 16 7 C 0.01 0.56 5.36 84.65 0.45 1.01 16 8 N -0.95 -61.32 13.96 21.45 0.30 -61.02 16 9 Si 0.93 44.30 25.71 68.60 1.76 46.06 16 10 H -0.28 -13.46 7.11 99.48 0.71 -12.75 16 11 H -0.29 -13.70 7.11 99.48 0.71 -12.99 16 12 H -0.22 -9.20 5.33 99.48 0.53 -8.67 16 13 N -0.67 -27.58 5.94 -473.30 -2.81 -30.39 16 14 C 0.11 3.49 1.45 44.92 0.07 3.56 16 15 H 0.07 2.14 4.86 -2.39 -0.01 2.13 16 16 C 0.07 1.73 5.09 71.98 0.37 2.09 16 17 O -0.40 -11.63 10.14 -148.98 -1.51 -13.14 16 18 C 0.02 0.50 11.01 113.37 1.25 1.75 16 19 C -0.14 -4.49 4.91 -10.77 -0.05 -4.54 16 20 C -0.15 -3.75 9.79 30.59 0.30 -3.45 16 21 C -0.20 -5.81 10.18 30.62 0.31 -5.50 16 22 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 23 H 0.07 1.77 5.55 -2.38 -0.01 1.76 16 24 H 0.05 1.50 8.10 -2.39 -0.02 1.48 16 25 H 0.05 1.97 4.70 -2.39 -0.01 1.96 16 26 H 0.05 2.10 7.98 -2.39 -0.02 2.08 16 27 H 0.26 15.83 8.31 -92.71 -0.77 15.06 16 28 H 0.33 13.06 7.78 -89.70 -0.70 12.36 16 29 H 0.07 1.47 7.47 -2.39 -0.02 1.45 16 30 H 0.05 1.25 8.02 -2.39 -0.02 1.23 16 31 H 0.04 0.81 8.14 -2.39 -0.02 0.79 16 32 H 0.09 1.63 8.14 -2.38 -0.02 1.61 16 33 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 34 H 0.08 3.12 8.14 -2.39 -0.02 3.10 16 35 H 0.11 2.14 7.66 -2.39 -0.02 2.12 16 36 H 0.10 2.21 8.14 -2.39 -0.02 2.20 16 37 H 0.09 2.60 8.05 -2.39 -0.02 2.58 16 38 H 0.09 2.56 8.14 -2.39 -0.02 2.54 16 Total: -1.00 -69.57 297.25 1.66 -67.91 By element: Atomic # 1 Polarization: 25.41 SS G_CDS: 0.15 Total: 25.57 kcal Atomic # 6 Polarization: -38.75 SS G_CDS: 3.76 Total: -34.99 kcal Atomic # 7 Polarization: -88.90 SS G_CDS: -2.51 Total: -91.41 kcal Atomic # 8 Polarization: -11.63 SS G_CDS: -1.51 Total: -13.14 kcal Atomic # 14 Polarization: 44.30 SS G_CDS: 1.76 Total: 46.06 kcal Total: -69.57 1.66 -67.91 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087480209.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.464 kcal (2) G-P(sol) polarization free energy of solvation -69.566 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.102 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.655 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.911 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.447 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds