Wall clock time and date at job start Sun Mar 29 2020 21:53:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53000 * 109.47361 * 2 1 4 4 H 1.09006 * 109.46814 * 55.23078 * 3 2 1 5 5 C 1.50693 * 109.47088 * 175.23141 * 3 2 1 6 6 H 1.08001 * 120.00441 * 119.99963 * 5 3 2 7 7 C 1.37885 * 120.00158 * 300.00062 * 5 3 2 8 8 N 1.31510 * 119.99752 * 0.02562 * 7 5 3 9 9 Si 1.86799 * 119.99914 * 180.02562 * 7 5 3 10 10 H 1.48493 * 109.47368 * 89.99738 * 9 7 5 11 11 H 1.48501 * 109.46711 * 209.99958 * 9 7 5 12 12 H 1.48499 * 109.47348 * 329.99614 * 9 7 5 13 13 N 1.46901 * 109.46779 * 295.23294 * 3 2 1 14 14 C 1.46899 * 110.99817 * 98.26650 * 13 3 2 15 15 H 1.08994 * 109.47414 * 335.50593 * 14 13 3 16 16 C 1.53000 * 109.47175 * 215.50645 * 14 13 3 17 17 O 1.42907 * 109.47067 * 296.56522 * 16 14 13 18 18 C 1.42895 * 114.00043 * 179.97438 * 17 16 14 19 19 C 1.53002 * 109.47306 * 95.51001 * 14 13 3 20 20 C 1.53004 * 117.49889 * 54.01377 * 19 14 13 21 21 C 1.53000 * 60.00158 * 252.51428 * 20 19 14 22 22 H 1.08996 * 109.47152 * 185.67967 * 1 2 3 23 23 H 1.09001 * 109.46772 * 305.68000 * 1 2 3 24 24 H 1.08995 * 109.46591 * 65.67606 * 1 2 3 25 25 H 1.08999 * 109.46796 * 239.99795 * 2 1 3 26 26 H 1.09006 * 109.46790 * 120.00308 * 2 1 3 27 27 H 0.96998 * 119.99918 * 180.02562 * 8 7 5 28 28 H 1.00898 * 111.00109 * 334.30540 * 13 3 2 29 29 H 1.09008 * 109.47015 * 56.55732 * 16 14 13 30 30 H 1.08990 * 109.47459 * 176.56028 * 16 14 13 31 31 H 1.09000 * 109.47271 * 179.97438 * 18 17 16 32 32 H 1.09003 * 109.47188 * 299.99909 * 18 17 16 33 33 H 1.09008 * 109.47325 * 59.99319 * 18 17 16 34 34 H 1.09000 * 115.56243 * 199.70763 * 19 14 13 35 35 H 1.09003 * 117.49629 * 145.02067 * 20 19 14 36 36 H 1.08997 * 117.49675 * 0.02562 * 20 19 14 37 37 H 1.09004 * 117.50230 * 107.48940 * 21 20 19 38 38 H 1.08999 * 117.49617 * 252.48947 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6087 1.9804 0.8442 5 6 3.5424 1.4440 0.1181 6 1 4.1448 1.8896 -0.6597 7 6 4.1480 0.8766 1.2192 8 7 3.4145 0.3336 2.1661 9 14 6.0102 0.8792 1.3659 10 1 6.4497 2.1111 2.0689 11 1 6.4477 -0.3129 2.1358 12 1 6.6137 0.8413 0.0096 13 7 1.6467 2.1009 -1.2529 14 6 0.4366 2.9120 -1.0638 15 1 -0.1313 2.5256 -0.2176 16 6 -0.4235 2.8471 -2.3275 17 8 0.2914 3.4271 -3.4206 18 6 -0.4268 3.4165 -4.6558 19 6 0.8335 4.3643 -0.7912 20 6 1.7590 5.0453 -1.8015 21 6 2.2934 4.6410 -0.4260 22 1 -0.3633 -1.0226 0.1017 23 1 -0.3633 0.5994 0.8348 24 1 -0.3632 0.4233 -0.9364 25 1 1.8933 -0.5139 -0.8900 26 1 1.8934 -0.5139 0.8900 27 1 3.8405 -0.0653 2.9409 28 1 1.5176 1.4255 -1.9913 29 1 -0.6553 1.8069 -2.5562 30 1 -1.3495 3.3986 -2.1655 31 1 0.1831 3.8741 -5.4347 32 1 -0.6585 2.3879 -4.9326 33 1 -1.3533 3.9795 -4.5424 34 1 0.0702 4.9788 -0.3139 35 1 1.6044 6.1079 -1.9889 36 1 2.0847 4.4589 -2.6605 37 1 2.9710 3.7884 -0.3800 38 1 2.4908 5.4376 0.2913 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000087480212.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:53:31 Heat of formation + Delta-G solvation = -21.880732 kcal Electronic energy + Delta-G solvation = -17008.638303 eV Core-core repulsion = 14466.120277 eV Total energy + Delta-G solvation = -2542.518026 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -38.61746 -36.58021 -35.05135 -32.31804 -30.73050 -28.77620 -26.45352 -25.41219 -22.98836 -22.62248 -21.32248 -19.67178 -18.82710 -16.55384 -16.23956 -15.54549 -15.11152 -14.65402 -14.40730 -13.70311 -13.40233 -13.17359 -12.77929 -12.33881 -12.03226 -11.70791 -11.44572 -11.21512 -11.11750 -10.76850 -10.61489 -10.40213 -10.34580 -9.89917 -9.80190 -9.69654 -9.47234 -9.24168 -9.05661 -8.82959 -8.27227 -7.06605 -5.91957 -3.94074 3.37111 3.43474 3.48103 4.08170 4.49632 4.74855 5.22853 5.34108 5.37519 5.42978 5.49736 5.59511 5.74661 5.77635 5.79557 5.91386 6.12007 6.13771 6.21832 6.33723 6.39671 6.50235 6.57114 6.77399 6.82346 7.02730 7.18284 7.26721 7.41934 7.53390 7.59019 7.81529 7.98835 8.39492 8.69247 8.70268 9.14089 9.70735 11.14061 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.028451 B = 0.008702 C = 0.007594 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 983.910579 B = 3216.926867 C = 3686.122505 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.150 4.150 3 C 0.218 3.782 4 H 0.032 0.968 5 C -0.487 4.487 6 H 0.064 0.936 7 C 0.054 3.946 8 N -0.897 5.897 9 Si 0.893 3.107 10 H -0.282 1.282 11 H -0.290 1.290 12 H -0.275 1.275 13 N -0.668 5.668 14 C 0.119 3.881 15 H 0.058 0.942 16 C 0.062 3.938 17 O -0.362 6.362 18 C 0.028 3.972 19 C -0.152 4.152 20 C -0.156 4.156 21 C -0.169 4.169 22 H 0.033 0.967 23 H 0.043 0.957 24 H 0.032 0.968 25 H 0.034 0.966 26 H 0.099 0.901 27 H 0.258 0.742 28 H 0.325 0.675 29 H 0.042 0.958 30 H 0.042 0.958 31 H 0.080 0.920 32 H 0.034 0.966 33 H 0.032 0.968 34 H 0.081 0.919 35 H 0.064 0.936 36 H 0.105 0.895 37 H 0.137 0.863 38 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.806 4.272 -7.945 11.929 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.189 4.189 3 C 0.111 3.889 4 H 0.050 0.950 5 C -0.526 4.526 6 H 0.082 0.918 7 C -0.146 4.146 8 N -0.538 5.538 9 Si 0.721 3.279 10 H -0.209 1.209 11 H -0.216 1.216 12 H -0.200 1.200 13 N -0.299 5.299 14 C 0.008 3.992 15 H 0.076 0.924 16 C -0.015 4.015 17 O -0.280 6.280 18 C -0.069 4.069 19 C -0.171 4.171 20 C -0.193 4.193 21 C -0.205 4.205 22 H 0.053 0.947 23 H 0.062 0.938 24 H 0.051 0.949 25 H 0.053 0.947 26 H 0.117 0.883 27 H 0.068 0.932 28 H 0.143 0.857 29 H 0.060 0.940 30 H 0.060 0.940 31 H 0.099 0.901 32 H 0.052 0.948 33 H 0.051 0.949 34 H 0.099 0.901 35 H 0.083 0.917 36 H 0.124 0.876 37 H 0.155 0.845 38 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -7.165 4.786 -7.661 11.530 hybrid contribution -0.205 -0.851 0.243 0.908 sum -7.371 3.935 -7.418 11.173 Atomic orbital electron populations 1.21938 0.99752 0.99466 0.99465 1.22270 0.91339 1.02389 1.02913 1.19291 0.95302 0.88324 0.86004 0.95016 1.21205 0.91197 1.35411 1.04736 0.91831 1.24950 0.97938 0.95718 0.95957 1.69868 1.34676 1.39507 1.09716 0.86576 0.86059 0.77238 0.77980 1.20865 1.21609 1.19974 1.60659 1.31144 1.28306 1.09807 1.21122 0.91123 0.93776 0.93178 0.92405 1.22842 0.94700 0.96037 0.87964 1.88110 1.41821 1.81400 1.16704 1.22689 0.96665 0.99791 0.87719 1.22068 0.93923 0.95727 1.05417 1.22667 1.04202 0.97883 0.94530 1.23197 0.96986 1.03772 0.96579 0.94740 0.93751 0.94921 0.94713 0.88261 0.93213 0.85711 0.94011 0.93962 0.90113 0.94767 0.94913 0.90085 0.91710 0.87645 0.84534 0.91556 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.84 8.63 37.16 0.32 -2.52 16 2 C -0.15 -3.43 5.11 -26.73 -0.14 -3.57 16 3 C 0.22 5.23 1.45 -68.87 -0.10 5.13 16 4 H 0.03 0.85 7.46 -51.93 -0.39 0.47 16 5 C -0.49 -13.05 7.47 -34.44 -0.26 -13.31 16 6 H 0.06 1.75 7.67 -52.49 -0.40 1.34 16 7 C 0.05 1.49 5.29 -17.82 -0.09 1.39 16 8 N -0.90 -25.31 11.29 55.43 0.63 -24.68 16 9 Si 0.89 21.49 29.54 -169.99 -5.02 16.47 16 10 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 11 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 12 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 13 N -0.67 -13.75 4.51 -100.96 -0.46 -14.20 16 14 C 0.12 2.14 1.79 -67.71 -0.12 2.02 16 15 H 0.06 1.09 6.04 -51.93 -0.31 0.78 16 16 C 0.06 0.93 5.26 37.16 0.20 1.13 16 17 O -0.36 -5.59 7.77 -35.23 -0.27 -5.86 16 18 C 0.03 0.33 11.01 101.05 1.11 1.44 16 19 C -0.15 -2.76 5.77 -90.61 -0.52 -3.28 16 20 C -0.16 -2.76 8.94 -26.73 -0.24 -3.00 16 21 C -0.17 -3.34 9.73 -26.73 -0.26 -3.60 16 22 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 23 H 0.04 0.85 7.80 -51.93 -0.41 0.45 16 24 H 0.03 0.56 6.04 -51.93 -0.31 0.24 16 25 H 0.03 0.79 8.03 -51.93 -0.42 0.37 16 26 H 0.10 2.60 5.96 -51.93 -0.31 2.29 16 27 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 28 H 0.33 6.56 7.59 -39.29 -0.30 6.27 16 29 H 0.04 0.61 7.21 -51.92 -0.37 0.23 16 30 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 32 H 0.03 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.03 0.34 8.14 -51.92 -0.42 -0.09 16 34 H 0.08 1.36 8.14 -51.93 -0.42 0.93 16 35 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 36 H 0.11 2.00 6.70 -51.93 -0.35 1.66 16 37 H 0.14 3.17 4.95 -51.93 -0.26 2.91 16 38 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 LS Contribution 293.78 15.07 4.43 4.43 Total: -1.00 -27.38 293.78 -7.14 -34.52 By element: Atomic # 1 Polarization: 13.82 SS G_CDS: -6.34 Total: 7.48 kcal Atomic # 6 Polarization: -18.05 SS G_CDS: -0.10 Total: -18.15 kcal Atomic # 7 Polarization: -39.05 SS G_CDS: 0.17 Total: -38.88 kcal Atomic # 8 Polarization: -5.59 SS G_CDS: -0.27 Total: -5.86 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -27.38 -7.14 -34.52 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087480212.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.640 kcal (2) G-P(sol) polarization free energy of solvation -27.377 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.738 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.143 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.520 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.881 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds