Wall clock time and date at job start Sun Mar 29 2020 21:53:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53000 * 109.47361 * 2 1 4 4 H 1.09006 * 109.46814 * 55.23078 * 3 2 1 5 5 C 1.50693 * 109.47088 * 175.23141 * 3 2 1 6 6 H 1.08001 * 120.00441 * 119.99963 * 5 3 2 7 7 C 1.37885 * 120.00158 * 300.00062 * 5 3 2 8 8 N 1.31510 * 119.99752 * 0.02562 * 7 5 3 9 9 Si 1.86799 * 119.99914 * 180.02562 * 7 5 3 10 10 H 1.48493 * 109.47368 * 89.99738 * 9 7 5 11 11 H 1.48501 * 109.46711 * 209.99958 * 9 7 5 12 12 H 1.48499 * 109.47348 * 329.99614 * 9 7 5 13 13 N 1.46901 * 109.46779 * 295.23294 * 3 2 1 14 14 C 1.46899 * 110.99817 * 98.26650 * 13 3 2 15 15 H 1.08994 * 109.47414 * 335.50593 * 14 13 3 16 16 C 1.53000 * 109.47175 * 215.50645 * 14 13 3 17 17 O 1.42907 * 109.47067 * 296.56522 * 16 14 13 18 18 C 1.42895 * 114.00043 * 179.97438 * 17 16 14 19 19 C 1.53002 * 109.47306 * 95.51001 * 14 13 3 20 20 C 1.53004 * 117.49889 * 54.01377 * 19 14 13 21 21 C 1.53000 * 60.00158 * 252.51428 * 20 19 14 22 22 H 1.08996 * 109.47152 * 185.67967 * 1 2 3 23 23 H 1.09001 * 109.46772 * 305.68000 * 1 2 3 24 24 H 1.08995 * 109.46591 * 65.67606 * 1 2 3 25 25 H 1.08999 * 109.46796 * 239.99795 * 2 1 3 26 26 H 1.09006 * 109.46790 * 120.00308 * 2 1 3 27 27 H 0.96998 * 119.99918 * 180.02562 * 8 7 5 28 28 H 1.00898 * 111.00109 * 334.30540 * 13 3 2 29 29 H 1.09008 * 109.47015 * 56.55732 * 16 14 13 30 30 H 1.08990 * 109.47459 * 176.56028 * 16 14 13 31 31 H 1.09000 * 109.47271 * 179.97438 * 18 17 16 32 32 H 1.09003 * 109.47188 * 299.99909 * 18 17 16 33 33 H 1.09008 * 109.47325 * 59.99319 * 18 17 16 34 34 H 1.09000 * 115.56243 * 199.70763 * 19 14 13 35 35 H 1.09003 * 117.49629 * 145.02067 * 20 19 14 36 36 H 1.08997 * 117.49675 * 0.02562 * 20 19 14 37 37 H 1.09004 * 117.50230 * 107.48940 * 21 20 19 38 38 H 1.08999 * 117.49617 * 252.48947 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6087 1.9804 0.8442 5 6 3.5424 1.4440 0.1181 6 1 4.1448 1.8896 -0.6597 7 6 4.1480 0.8766 1.2192 8 7 3.4145 0.3336 2.1661 9 14 6.0102 0.8792 1.3659 10 1 6.4497 2.1111 2.0689 11 1 6.4477 -0.3129 2.1358 12 1 6.6137 0.8413 0.0096 13 7 1.6467 2.1009 -1.2529 14 6 0.4366 2.9120 -1.0638 15 1 -0.1313 2.5256 -0.2176 16 6 -0.4235 2.8471 -2.3275 17 8 0.2914 3.4271 -3.4206 18 6 -0.4268 3.4165 -4.6558 19 6 0.8335 4.3643 -0.7912 20 6 1.7590 5.0453 -1.8015 21 6 2.2934 4.6410 -0.4260 22 1 -0.3633 -1.0226 0.1017 23 1 -0.3633 0.5994 0.8348 24 1 -0.3632 0.4233 -0.9364 25 1 1.8933 -0.5139 -0.8900 26 1 1.8934 -0.5139 0.8900 27 1 3.8405 -0.0653 2.9409 28 1 1.5176 1.4255 -1.9913 29 1 -0.6553 1.8069 -2.5562 30 1 -1.3495 3.3986 -2.1655 31 1 0.1831 3.8741 -5.4347 32 1 -0.6585 2.3879 -4.9326 33 1 -1.3533 3.9795 -4.5424 34 1 0.0702 4.9788 -0.3139 35 1 1.6044 6.1079 -1.9889 36 1 2.0847 4.4589 -2.6605 37 1 2.9710 3.7884 -0.3800 38 1 2.4908 5.4376 0.2913 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000087480212.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:53:30 Heat of formation + Delta-G solvation = -38.351243 kcal Electronic energy + Delta-G solvation = -17009.352518 eV Core-core repulsion = 14466.120277 eV Total energy + Delta-G solvation = -2543.232241 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.02561 -37.88400 -36.72002 -34.24327 -32.36055 -30.33108 -27.91057 -26.81024 -24.51328 -24.25315 -22.83771 -21.51141 -20.29777 -18.38896 -17.67338 -16.82985 -16.48316 -16.37764 -15.79609 -15.36152 -14.97200 -14.62914 -14.49384 -13.76766 -13.46163 -13.19656 -13.09842 -12.96753 -12.64357 -12.43671 -12.28349 -12.02273 -11.76713 -11.71884 -11.56809 -11.51453 -11.02128 -10.77376 -10.42907 -10.37525 -10.33730 -8.75597 -8.00910 -6.09330 1.43229 1.44781 1.54505 2.48205 2.97946 3.25497 3.32211 3.74885 4.07511 4.18044 4.40751 4.43925 4.48855 4.50670 4.56683 4.66772 4.67050 4.73099 4.80206 4.89195 4.95680 5.02149 5.10052 5.14463 5.25707 5.33904 5.43512 5.63450 5.72687 5.81496 5.91957 5.97602 6.40084 6.46437 6.81419 7.00373 7.07164 7.59422 9.02727 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.028451 B = 0.008702 C = 0.007594 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 983.910579 B = 3216.926867 C = 3686.122505 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.145 4.145 3 C 0.232 3.768 4 H -0.002 1.002 5 C -0.497 4.497 6 H 0.050 0.950 7 C 0.009 3.991 8 N -0.921 5.921 9 Si 0.949 3.051 10 H -0.281 1.281 11 H -0.286 1.286 12 H -0.272 1.272 13 N -0.668 5.668 14 C 0.115 3.885 15 H 0.051 0.949 16 C 0.070 3.930 17 O -0.387 6.387 18 C 0.024 3.976 19 C -0.149 4.149 20 C -0.133 4.133 21 C -0.193 4.193 22 H 0.051 0.949 23 H 0.037 0.963 24 H 0.054 0.946 25 H 0.032 0.968 26 H 0.065 0.935 27 H 0.257 0.743 28 H 0.328 0.672 29 H 0.050 0.950 30 H 0.064 0.936 31 H 0.091 0.909 32 H 0.042 0.958 33 H 0.048 0.952 34 H 0.100 0.900 35 H 0.088 0.912 36 H 0.093 0.907 37 H 0.100 0.900 38 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.940 4.869 -9.303 13.790 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.184 4.184 3 C 0.124 3.876 4 H 0.016 0.984 5 C -0.535 4.535 6 H 0.068 0.932 7 C -0.188 4.188 8 N -0.562 5.562 9 Si 0.776 3.224 10 H -0.207 1.207 11 H -0.212 1.212 12 H -0.197 1.197 13 N -0.299 5.299 14 C 0.004 3.996 15 H 0.068 0.932 16 C -0.007 4.007 17 O -0.306 6.306 18 C -0.072 4.072 19 C -0.168 4.168 20 C -0.170 4.170 21 C -0.231 4.231 22 H 0.070 0.930 23 H 0.056 0.944 24 H 0.073 0.927 25 H 0.051 0.949 26 H 0.084 0.916 27 H 0.066 0.934 28 H 0.146 0.854 29 H 0.068 0.932 30 H 0.082 0.918 31 H 0.109 0.891 32 H 0.061 0.939 33 H 0.066 0.934 34 H 0.118 0.882 35 H 0.106 0.894 36 H 0.111 0.889 37 H 0.118 0.882 38 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -8.306 5.388 -9.038 13.406 hybrid contribution 0.136 -0.995 0.620 1.180 sum -8.170 4.393 -8.418 12.527 Atomic orbital electron populations 1.21785 0.96523 1.00690 1.00385 1.22094 0.94245 1.01032 1.01073 1.18938 0.93588 0.88762 0.86337 0.98364 1.21464 0.92944 1.34812 1.04324 0.93174 1.25605 1.01653 0.95701 0.95874 1.69994 1.35965 1.40225 1.10050 0.85697 0.81703 0.77147 0.77879 1.20734 1.21221 1.19688 1.60503 1.33185 1.27993 1.08189 1.21173 0.90381 0.93084 0.94932 0.93169 1.22691 0.94409 0.97035 0.86611 1.88060 1.43061 1.81551 1.17890 1.22869 0.97272 1.00785 0.86293 1.22216 0.93303 0.96163 1.05163 1.22592 1.02654 0.98927 0.92812 1.23032 0.97970 1.03178 0.98876 0.93033 0.94374 0.92703 0.94904 0.91631 0.93365 0.85422 0.93179 0.91766 0.89091 0.93928 0.93367 0.88210 0.89378 0.88869 0.88212 0.90874 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.03 8.63 71.98 0.62 -4.41 16 2 C -0.14 -6.69 5.11 30.60 0.16 -6.54 16 3 C 0.23 11.36 1.45 44.17 0.06 11.42 16 4 H 0.00 -0.08 7.46 -2.38 -0.02 -0.10 16 5 C -0.50 -27.34 7.47 25.60 0.19 -27.15 16 6 H 0.05 2.84 7.67 -2.91 -0.02 2.81 16 7 C 0.01 0.51 5.29 84.66 0.45 0.96 16 8 N -0.92 -53.21 11.29 21.45 0.24 -52.97 16 9 Si 0.95 44.85 29.54 68.60 2.03 46.88 16 10 H -0.28 -13.16 7.11 99.48 0.71 -12.45 16 11 H -0.29 -13.29 7.11 99.48 0.71 -12.58 16 12 H -0.27 -12.63 7.11 99.48 0.71 -11.93 16 13 N -0.67 -27.40 4.51 -473.32 -2.13 -29.53 16 14 C 0.11 3.98 1.79 44.92 0.08 4.06 16 15 H 0.05 1.84 6.04 -2.39 -0.01 1.82 16 16 C 0.07 1.91 5.26 71.98 0.38 2.29 16 17 O -0.39 -10.91 7.77 -148.98 -1.16 -12.07 16 18 C 0.02 0.48 11.01 113.37 1.25 1.73 16 19 C -0.15 -5.20 5.77 -10.79 -0.06 -5.26 16 20 C -0.13 -4.49 8.94 30.60 0.27 -4.22 16 21 C -0.19 -7.66 9.73 30.60 0.30 -7.36 16 22 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 23 H 0.04 1.44 7.80 -2.39 -0.02 1.42 16 24 H 0.05 1.76 6.04 -2.39 -0.01 1.74 16 25 H 0.03 1.49 8.03 -2.39 -0.02 1.47 16 26 H 0.07 3.51 5.96 -2.38 -0.01 3.49 16 27 H 0.26 14.28 8.31 -92.71 -0.77 13.51 16 28 H 0.33 12.99 7.59 -89.70 -0.68 12.31 16 29 H 0.05 1.29 7.21 -2.38 -0.02 1.27 16 30 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 31 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 32 H 0.04 0.77 8.14 -2.39 -0.02 0.75 16 33 H 0.05 0.81 8.14 -2.38 -0.02 0.79 16 34 H 0.10 3.10 8.14 -2.39 -0.02 3.08 16 35 H 0.09 2.56 8.14 -2.39 -0.02 2.54 16 36 H 0.09 3.42 6.70 -2.39 -0.02 3.40 16 37 H 0.10 4.77 4.95 -2.39 -0.01 4.76 16 38 H 0.07 2.72 8.14 -2.39 -0.02 2.70 16 Total: -1.00 -59.60 293.78 3.02 -56.58 By element: Atomic # 1 Polarization: 25.23 SS G_CDS: 0.35 Total: 25.58 kcal Atomic # 6 Polarization: -38.17 SS G_CDS: 3.70 Total: -34.47 kcal Atomic # 7 Polarization: -80.61 SS G_CDS: -1.89 Total: -82.50 kcal Atomic # 8 Polarization: -10.91 SS G_CDS: -1.16 Total: -12.07 kcal Atomic # 14 Polarization: 44.85 SS G_CDS: 2.03 Total: 46.88 kcal Total: -59.60 3.02 -56.58 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087480212.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.225 kcal (2) G-P(sol) polarization free energy of solvation -59.597 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.372 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.021 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.577 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.351 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds