Wall clock time and date at job start Sun Mar 29 2020 21:47:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53008 * 109.46757 * 2 1 4 4 H 1.09002 * 109.47049 * 56.55052 * 3 2 1 5 5 C 1.50696 * 109.47067 * 176.55226 * 3 2 1 6 6 H 1.07995 * 119.99938 * 120.00228 * 5 3 2 7 7 C 1.37884 * 119.99792 * 300.00100 * 5 3 2 8 8 N 1.31511 * 119.99808 * 359.97438 * 7 5 3 9 9 Si 1.86795 * 119.99604 * 180.02562 * 7 5 3 10 10 H 1.48497 * 109.47502 * 0.02562 * 9 7 5 11 11 H 1.48507 * 109.47037 * 120.00055 * 9 7 5 12 12 H 1.48495 * 109.47367 * 239.99781 * 9 7 5 13 13 N 1.46898 * 109.47022 * 296.55252 * 3 2 1 14 14 C 1.46842 * 111.00039 * 298.86108 * 13 3 2 15 15 C 1.53045 * 109.52336 * 174.16158 * 14 13 3 16 16 C 1.53118 * 109.27539 * 59.17988 * 15 14 13 17 17 C 1.53123 * 109.16225 * 302.34413 * 16 15 14 18 18 C 1.52998 * 109.50236 * 177.59751 * 17 16 15 19 19 O 1.42900 * 109.50260 * 297.71607 * 17 16 15 20 20 C 1.46850 * 110.99898 * 174.65095 * 13 3 2 21 21 H 1.09003 * 109.46745 * 185.06098 * 1 2 3 22 22 H 1.08993 * 109.47416 * 305.06339 * 1 2 3 23 23 H 1.09008 * 109.47406 * 65.07445 * 1 2 3 24 24 H 1.08998 * 109.47359 * 240.00785 * 2 1 3 25 25 H 1.08997 * 109.47387 * 119.99726 * 2 1 3 26 26 H 0.97005 * 119.99218 * 179.97438 * 8 7 5 27 27 H 1.08995 * 109.46667 * 294.17680 * 14 13 3 28 28 H 1.09000 * 109.46418 * 54.15169 * 14 13 3 29 29 H 1.08995 * 109.50433 * 179.11794 * 15 14 13 30 30 H 1.08997 * 109.49982 * 299.23955 * 15 14 13 31 31 H 1.09006 * 109.52563 * 62.25231 * 16 15 14 32 32 H 1.08997 * 109.52416 * 182.37920 * 16 15 14 33 33 H 1.08997 * 109.47264 * 60.00257 * 18 17 16 34 34 H 1.08999 * 109.47196 * 180.02562 * 18 17 16 35 35 H 1.09003 * 109.47191 * 300.00072 * 18 17 16 36 36 H 0.96697 * 113.99940 * 300.00046 * 19 17 16 37 37 H 1.09005 * 109.46100 * 305.85637 * 20 13 3 38 38 H 1.08995 * 109.46142 * 65.82270 * 20 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6269 1.9740 0.8575 5 6 3.5444 1.4435 0.0854 6 1 4.1297 1.8952 -0.7018 7 6 4.1738 0.8677 1.1688 8 7 3.4610 0.3182 2.1276 9 14 6.0387 0.8696 1.2750 10 1 6.6020 1.5465 0.0793 11 1 6.4641 1.5940 2.4996 12 1 6.5327 -0.5297 1.3309 13 7 1.6194 2.1106 -1.2389 14 6 2.1804 1.4366 -2.4167 15 6 1.6072 2.0669 -3.6881 16 6 1.9565 3.5574 -3.7151 17 6 1.4024 4.2264 -2.4541 18 6 1.7986 5.7042 -2.4438 19 8 -0.0220 4.1135 -2.4407 20 6 1.9816 3.5336 -1.2186 21 1 -0.3633 -1.0237 0.0907 22 1 -0.3634 0.5903 0.8411 23 1 -0.3634 0.4331 -0.9320 24 1 1.8933 -0.5137 -0.8900 25 1 1.8933 -0.5138 0.8900 26 1 3.9038 -0.0872 2.8896 27 1 3.2650 1.5449 -2.4149 28 1 1.9212 0.3783 -2.3874 29 1 2.0357 1.5768 -4.5623 30 1 0.5239 1.9467 -3.6972 31 1 3.0395 3.6774 -3.7452 32 1 1.5142 4.0193 -4.5978 33 1 1.3888 6.1964 -3.3258 34 1 1.4044 6.1798 -1.5458 35 1 2.8853 5.7891 -2.4523 36 1 -0.4566 4.5288 -3.1981 37 1 1.5780 3.9983 -0.3189 38 1 3.0671 3.6321 -1.2223 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000123830675.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:47:09 Heat of formation + Delta-G solvation = -60.809624 kcal Electronic energy + Delta-G solvation = -17314.139652 eV Core-core repulsion = 14769.933542 eV Total energy + Delta-G solvation = -2544.206110 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.11526 -36.24351 -33.55205 -31.78115 -30.92517 -30.55391 -26.59507 -26.11759 -23.84543 -22.11970 -21.56828 -19.41458 -18.77926 -16.28986 -15.92527 -15.39745 -14.66592 -14.39147 -14.02964 -13.37945 -13.29766 -12.88107 -12.61415 -12.33372 -11.92746 -11.56689 -11.51599 -11.44067 -11.20624 -11.08572 -10.85979 -10.56020 -10.43037 -10.30876 -10.12180 -9.75119 -9.57587 -9.35517 -9.13805 -8.96625 -8.32628 -6.96998 -5.94447 -4.08982 3.26129 3.34875 3.37519 4.41037 4.63490 4.99609 5.10268 5.25921 5.28900 5.49049 5.55594 5.80577 5.84310 6.03450 6.12009 6.23004 6.29579 6.38174 6.41746 6.47879 6.54758 6.57593 6.73954 6.75849 6.83700 6.97058 7.20406 7.29090 7.43113 7.67895 7.81993 8.06588 8.12311 8.23286 8.42245 8.56872 9.02842 9.58454 11.03428 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.026745 B = 0.009771 C = 0.008400 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1046.675296 B = 2864.930443 C = 3332.434767 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.111 4.111 3 C 0.213 3.787 4 H 0.038 0.962 5 C -0.542 4.542 6 H 0.055 0.945 7 C 0.068 3.932 8 N -0.884 5.884 9 Si 0.885 3.115 10 H -0.275 1.275 11 H -0.284 1.284 12 H -0.284 1.284 13 N -0.521 5.521 14 C 0.060 3.940 15 C -0.113 4.113 16 C -0.141 4.141 17 C 0.131 3.869 18 C -0.176 4.176 19 O -0.538 6.538 20 C 0.082 3.918 21 H 0.023 0.977 22 H 0.039 0.961 23 H 0.047 0.953 24 H 0.033 0.967 25 H 0.091 0.909 26 H 0.260 0.740 27 H 0.032 0.968 28 H 0.070 0.930 29 H 0.051 0.949 30 H 0.068 0.932 31 H 0.063 0.937 32 H 0.053 0.947 33 H 0.052 0.948 34 H 0.062 0.938 35 H 0.062 0.938 36 H 0.357 0.643 37 H 0.067 0.933 38 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.328 5.886 -9.513 11.671 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.149 4.149 3 C 0.107 3.893 4 H 0.056 0.944 5 C -0.581 4.581 6 H 0.073 0.927 7 C -0.134 4.134 8 N -0.523 5.523 9 Si 0.713 3.287 10 H -0.200 1.200 11 H -0.211 1.211 12 H -0.210 1.210 13 N -0.245 5.245 14 C -0.068 4.068 15 C -0.151 4.151 16 C -0.179 4.179 17 C 0.089 3.911 18 C -0.234 4.234 19 O -0.342 6.342 20 C -0.047 4.047 21 H 0.042 0.958 22 H 0.058 0.942 23 H 0.067 0.933 24 H 0.051 0.949 25 H 0.109 0.891 26 H 0.070 0.930 27 H 0.050 0.950 28 H 0.088 0.912 29 H 0.070 0.930 30 H 0.087 0.913 31 H 0.082 0.918 32 H 0.072 0.928 33 H 0.071 0.929 34 H 0.081 0.919 35 H 0.081 0.919 36 H 0.202 0.798 37 H 0.086 0.914 38 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -3.691 5.426 -8.785 10.965 hybrid contribution 2.010 0.368 -0.351 2.073 sum -1.681 5.794 -9.135 10.948 Atomic orbital electron populations 1.21686 0.98733 0.98145 1.00783 1.21609 0.92335 0.99142 1.01836 1.19295 0.92568 0.91105 0.86360 0.94446 1.21799 0.92925 1.37515 1.05901 0.92675 1.24913 0.97765 0.95124 0.95634 1.69893 1.34723 1.37987 1.09679 0.86652 0.86432 0.77701 0.77873 1.20026 1.21052 1.21022 1.62310 1.58259 1.00376 1.03548 1.21918 0.96756 0.98446 0.89722 1.21552 1.01707 0.94221 0.97628 1.22226 1.00991 0.97425 0.97272 1.21363 0.81187 0.92629 0.95871 1.22460 1.02079 0.96980 1.01883 1.86766 1.18270 1.80665 1.48454 1.21775 0.97250 0.90611 0.95075 0.95797 0.94195 0.93350 0.94876 0.89106 0.92994 0.95000 0.91182 0.92992 0.91319 0.91848 0.92786 0.92909 0.91882 0.91902 0.79828 0.91436 0.93585 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.91 9.72 37.16 0.36 -2.55 16 2 C -0.11 -2.69 5.02 -26.73 -0.13 -2.83 16 3 C 0.21 5.36 1.76 -68.86 -0.12 5.24 16 4 H 0.04 1.06 8.07 -51.93 -0.42 0.64 16 5 C -0.54 -14.56 7.19 -34.44 -0.25 -14.81 16 6 H 0.06 1.49 5.84 -52.49 -0.31 1.18 16 7 C 0.07 1.86 5.30 -17.82 -0.09 1.76 16 8 N -0.88 -25.04 11.30 55.43 0.63 -24.41 16 9 Si 0.89 21.18 29.54 -169.99 -5.02 16.16 16 10 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 11 H -0.28 -6.80 7.11 56.52 0.40 -6.39 16 12 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 13 N -0.52 -11.35 4.00 -228.08 -0.91 -12.26 16 14 C 0.06 1.20 4.80 -3.83 -0.02 1.18 16 15 C -0.11 -1.83 5.94 -26.65 -0.16 -1.99 16 16 C -0.14 -2.06 4.99 -26.61 -0.13 -2.20 16 17 C 0.13 2.07 1.00 -90.54 -0.09 1.98 16 18 C -0.18 -2.29 8.82 37.16 0.33 -1.97 16 19 O -0.54 -8.66 12.31 -35.23 -0.43 -9.09 16 20 C 0.08 1.64 4.10 -3.83 -0.02 1.63 16 21 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 22 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16 23 H 0.05 1.01 7.85 -51.92 -0.41 0.60 16 24 H 0.03 0.79 6.13 -51.93 -0.32 0.47 16 25 H 0.09 2.45 5.99 -51.93 -0.31 2.14 16 26 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 27 H 0.03 0.69 6.61 -51.93 -0.34 0.35 16 28 H 0.07 1.45 5.97 -51.93 -0.31 1.14 16 29 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.07 1.14 7.80 -51.93 -0.40 0.74 16 31 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 32 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 35 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 36 H 0.36 4.10 9.05 45.56 0.41 4.51 16 37 H 0.07 1.43 8.07 -51.93 -0.42 1.01 16 38 H 0.05 0.98 6.99 -51.93 -0.36 0.61 16 LS Contribution 288.92 15.07 4.35 4.35 Total: -1.00 -28.74 288.92 -7.42 -36.16 By element: Atomic # 1 Polarization: 9.34 SS G_CDS: -5.71 Total: 3.63 kcal Atomic # 6 Polarization: -14.22 SS G_CDS: -0.32 Total: -14.54 kcal Atomic # 7 Polarization: -36.39 SS G_CDS: -0.29 Total: -36.67 kcal Atomic # 8 Polarization: -8.66 SS G_CDS: -0.43 Total: -9.09 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.16 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -28.74 -7.42 -36.16 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000123830675.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.651 kcal (2) G-P(sol) polarization free energy of solvation -28.740 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.391 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.419 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.159 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.810 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds