Wall clock time and date at job start Sun Mar 29 2020 21:47:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53008 * 109.46757 * 2 1 4 4 H 1.09002 * 109.47049 * 56.55052 * 3 2 1 5 5 C 1.50696 * 109.47067 * 176.55226 * 3 2 1 6 6 H 1.07995 * 119.99938 * 120.00228 * 5 3 2 7 7 C 1.37884 * 119.99792 * 300.00100 * 5 3 2 8 8 N 1.31511 * 119.99808 * 359.97438 * 7 5 3 9 9 Si 1.86795 * 119.99604 * 180.02562 * 7 5 3 10 10 H 1.48497 * 109.47502 * 0.02562 * 9 7 5 11 11 H 1.48507 * 109.47037 * 120.00055 * 9 7 5 12 12 H 1.48495 * 109.47367 * 239.99781 * 9 7 5 13 13 N 1.46898 * 109.47022 * 296.55252 * 3 2 1 14 14 C 1.46842 * 111.00039 * 298.86108 * 13 3 2 15 15 C 1.53045 * 109.52336 * 174.16158 * 14 13 3 16 16 C 1.53118 * 109.27539 * 59.17988 * 15 14 13 17 17 C 1.53123 * 109.16225 * 302.34413 * 16 15 14 18 18 C 1.52998 * 109.50236 * 177.59751 * 17 16 15 19 19 O 1.42900 * 109.50260 * 297.71607 * 17 16 15 20 20 C 1.46850 * 110.99898 * 174.65095 * 13 3 2 21 21 H 1.09003 * 109.46745 * 185.06098 * 1 2 3 22 22 H 1.08993 * 109.47416 * 305.06339 * 1 2 3 23 23 H 1.09008 * 109.47406 * 65.07445 * 1 2 3 24 24 H 1.08998 * 109.47359 * 240.00785 * 2 1 3 25 25 H 1.08997 * 109.47387 * 119.99726 * 2 1 3 26 26 H 0.97005 * 119.99218 * 179.97438 * 8 7 5 27 27 H 1.08995 * 109.46667 * 294.17680 * 14 13 3 28 28 H 1.09000 * 109.46418 * 54.15169 * 14 13 3 29 29 H 1.08995 * 109.50433 * 179.11794 * 15 14 13 30 30 H 1.08997 * 109.49982 * 299.23955 * 15 14 13 31 31 H 1.09006 * 109.52563 * 62.25231 * 16 15 14 32 32 H 1.08997 * 109.52416 * 182.37920 * 16 15 14 33 33 H 1.08997 * 109.47264 * 60.00257 * 18 17 16 34 34 H 1.08999 * 109.47196 * 180.02562 * 18 17 16 35 35 H 1.09003 * 109.47191 * 300.00072 * 18 17 16 36 36 H 0.96697 * 113.99940 * 300.00046 * 19 17 16 37 37 H 1.09005 * 109.46100 * 305.85637 * 20 13 3 38 38 H 1.08995 * 109.46142 * 65.82270 * 20 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6269 1.9740 0.8575 5 6 3.5444 1.4435 0.0854 6 1 4.1297 1.8952 -0.7018 7 6 4.1738 0.8677 1.1688 8 7 3.4610 0.3182 2.1276 9 14 6.0387 0.8696 1.2750 10 1 6.6020 1.5465 0.0793 11 1 6.4641 1.5940 2.4996 12 1 6.5327 -0.5297 1.3309 13 7 1.6194 2.1106 -1.2389 14 6 2.1804 1.4366 -2.4167 15 6 1.6072 2.0669 -3.6881 16 6 1.9565 3.5574 -3.7151 17 6 1.4024 4.2264 -2.4541 18 6 1.7986 5.7042 -2.4438 19 8 -0.0220 4.1135 -2.4407 20 6 1.9816 3.5336 -1.2186 21 1 -0.3633 -1.0237 0.0907 22 1 -0.3634 0.5903 0.8411 23 1 -0.3634 0.4331 -0.9320 24 1 1.8933 -0.5137 -0.8900 25 1 1.8933 -0.5138 0.8900 26 1 3.9038 -0.0872 2.8896 27 1 3.2650 1.5449 -2.4149 28 1 1.9212 0.3783 -2.3874 29 1 2.0357 1.5768 -4.5623 30 1 0.5239 1.9467 -3.6972 31 1 3.0395 3.6774 -3.7452 32 1 1.5142 4.0193 -4.5978 33 1 1.3888 6.1964 -3.3258 34 1 1.4044 6.1798 -1.5458 35 1 2.8853 5.7891 -2.4523 36 1 -0.4566 4.5288 -3.1981 37 1 1.5780 3.9983 -0.3189 38 1 3.0671 3.6321 -1.2223 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000123830675.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:47:08 Heat of formation + Delta-G solvation = -80.954866 kcal Electronic energy + Delta-G solvation = -17315.013215 eV Core-core repulsion = 14769.933542 eV Total energy + Delta-G solvation = -2545.079673 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.57364 -37.85476 -35.19890 -33.66544 -32.36091 -32.09296 -28.53211 -27.44431 -25.65342 -23.85154 -23.01695 -20.89673 -20.59279 -18.29458 -17.26477 -17.07769 -16.26638 -16.08188 -15.31571 -15.13395 -14.86337 -14.54789 -14.20573 -13.73395 -13.48962 -13.18861 -13.12019 -12.82155 -12.77758 -12.75355 -12.65002 -12.32449 -12.04315 -11.91907 -11.62362 -11.57913 -11.46995 -11.03902 -10.71779 -10.55207 -10.41229 -8.83006 -8.01271 -6.26667 1.34401 1.36923 1.46703 2.38660 3.13957 3.35966 3.53518 3.91897 3.99265 4.17175 4.33923 4.49795 4.56953 4.70067 4.72754 4.75735 4.88437 4.92605 4.94750 4.97850 5.02320 5.07406 5.17325 5.24227 5.31977 5.39434 5.42834 5.51097 5.53783 5.64131 5.79950 6.07402 6.22246 6.41818 6.74901 6.96590 7.16978 7.44466 8.91861 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.026745 B = 0.009771 C = 0.008400 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1046.675296 B = 2864.930443 C = 3332.434767 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.105 4.105 3 C 0.218 3.782 4 H -0.005 1.005 5 C -0.550 4.550 6 H 0.049 0.951 7 C 0.020 3.980 8 N -0.911 5.911 9 Si 0.948 3.052 10 H -0.271 1.271 11 H -0.281 1.281 12 H -0.279 1.279 13 N -0.521 5.521 14 C 0.061 3.939 15 C -0.106 4.106 16 C -0.137 4.137 17 C 0.136 3.864 18 C -0.169 4.169 19 O -0.559 6.559 20 C 0.079 3.921 21 H 0.046 0.954 22 H 0.029 0.971 23 H 0.054 0.946 24 H 0.034 0.966 25 H 0.062 0.938 26 H 0.261 0.739 27 H 0.011 0.989 28 H 0.059 0.941 29 H 0.076 0.924 30 H 0.068 0.932 31 H 0.061 0.939 32 H 0.093 0.907 33 H 0.085 0.915 34 H 0.054 0.946 35 H 0.063 0.937 36 H 0.381 0.619 37 H 0.043 0.957 38 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.377 6.677 -11.760 13.938 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.143 4.143 3 C 0.111 3.889 4 H 0.013 0.987 5 C -0.589 4.589 6 H 0.067 0.933 7 C -0.180 4.180 8 N -0.551 5.551 9 Si 0.774 3.226 10 H -0.196 1.196 11 H -0.207 1.207 12 H -0.205 1.205 13 N -0.244 5.244 14 C -0.068 4.068 15 C -0.143 4.143 16 C -0.174 4.174 17 C 0.095 3.905 18 C -0.227 4.227 19 O -0.365 6.365 20 C -0.050 4.050 21 H 0.065 0.935 22 H 0.048 0.952 23 H 0.073 0.927 24 H 0.052 0.948 25 H 0.080 0.920 26 H 0.071 0.929 27 H 0.029 0.971 28 H 0.077 0.923 29 H 0.094 0.906 30 H 0.087 0.913 31 H 0.080 0.920 32 H 0.111 0.889 33 H 0.104 0.896 34 H 0.073 0.927 35 H 0.082 0.918 36 H 0.229 0.771 37 H 0.061 0.939 38 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges -3.751 6.233 -11.059 13.237 hybrid contribution 1.982 0.129 0.362 2.019 sum -1.768 6.362 -10.697 12.571 Atomic orbital electron populations 1.21532 0.96372 0.99470 1.00616 1.21450 0.94394 0.98149 1.00355 1.19061 0.91622 0.91443 0.86811 0.98659 1.21992 0.93945 1.37222 1.05761 0.93300 1.25648 1.02035 0.94931 0.95393 1.70023 1.36338 1.38592 1.10115 0.85669 0.81294 0.77781 0.77859 1.19583 1.20711 1.20503 1.62275 1.58142 1.01234 1.02786 1.21964 0.95671 0.98205 0.90935 1.21500 1.01495 0.95426 0.95912 1.22211 1.01150 0.96178 0.97907 1.21190 0.81311 0.93936 0.94017 1.22388 1.02302 0.94903 1.03137 1.86698 1.18248 1.81353 1.50243 1.21819 0.96451 0.89888 0.96868 0.93515 0.95177 0.92723 0.94767 0.91985 0.92935 0.97076 0.92304 0.90552 0.91298 0.91981 0.88899 0.89580 0.92663 0.91792 0.77110 0.93880 0.95387 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.24 9.72 71.98 0.70 -4.54 16 2 C -0.11 -5.23 5.02 30.60 0.15 -5.08 16 3 C 0.22 11.41 1.76 44.17 0.08 11.48 16 4 H 0.00 -0.27 8.07 -2.39 -0.02 -0.29 16 5 C -0.55 -30.48 7.19 25.60 0.18 -30.30 16 6 H 0.05 2.72 5.84 -2.91 -0.02 2.70 16 7 C 0.02 1.10 5.30 84.66 0.45 1.55 16 8 N -0.91 -53.12 11.30 21.45 0.24 -52.88 16 9 Si 0.95 44.13 29.54 68.60 2.03 46.16 16 10 H -0.27 -12.34 7.11 99.48 0.71 -11.63 16 11 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 12 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 13 N -0.52 -23.07 4.00 -875.50 -3.50 -26.58 16 14 C 0.06 2.41 4.80 86.33 0.41 2.82 16 15 C -0.11 -3.14 5.94 30.65 0.18 -2.95 16 16 C -0.14 -3.53 4.99 30.67 0.15 -3.37 16 17 C 0.14 4.05 1.00 -10.74 -0.01 4.04 16 18 C -0.17 -3.97 8.82 71.98 0.64 -3.34 16 19 O -0.56 -16.61 12.31 -148.98 -1.83 -18.45 16 20 C 0.08 3.21 4.10 86.32 0.35 3.56 16 21 H 0.05 1.75 8.14 -2.39 -0.02 1.74 16 22 H 0.03 1.31 8.14 -2.39 -0.02 1.29 16 23 H 0.05 2.24 7.85 -2.38 -0.02 2.23 16 24 H 0.03 1.66 6.13 -2.39 -0.01 1.64 16 25 H 0.06 3.46 5.99 -2.39 -0.01 3.44 16 26 H 0.26 14.46 8.31 -92.70 -0.77 13.69 16 27 H 0.01 0.48 6.61 -2.39 -0.02 0.47 16 28 H 0.06 2.43 5.97 -2.39 -0.01 2.42 16 29 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 30 H 0.07 2.08 7.80 -2.39 -0.02 2.06 16 31 H 0.06 1.64 8.14 -2.38 -0.02 1.63 16 32 H 0.09 1.75 8.14 -2.39 -0.02 1.74 16 33 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 34 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 35 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 36 H 0.38 7.27 9.05 -74.06 -0.67 6.60 16 37 H 0.04 1.91 8.07 -2.38 -0.02 1.89 16 38 H 0.03 1.23 6.99 -2.39 -0.02 1.21 16 Total: -1.00 -63.68 288.92 0.58 -63.10 By element: Atomic # 1 Polarization: 14.41 SS G_CDS: 0.36 Total: 14.77 kcal Atomic # 6 Polarization: -29.42 SS G_CDS: 3.29 Total: -26.13 kcal Atomic # 7 Polarization: -76.20 SS G_CDS: -3.26 Total: -79.46 kcal Atomic # 8 Polarization: -16.61 SS G_CDS: -1.83 Total: -18.45 kcal Atomic # 14 Polarization: 44.13 SS G_CDS: 2.03 Total: 46.16 kcal Total: -63.68 0.58 -63.10 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000123830675.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.850 kcal (2) G-P(sol) polarization free energy of solvation -63.682 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.532 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.577 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.105 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.955 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds