Wall clock time and date at job start Sun Mar 29 2020 21:39:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42895 * 114.00452 * 2 1 4 4 C 1.52999 * 109.47199 * 179.97438 * 3 2 1 5 5 C 1.52995 * 109.47151 * 64.76631 * 4 3 2 6 6 C 1.53000 * 109.47108 * 304.76820 * 4 3 2 7 7 N 1.46900 * 109.47400 * 184.76648 * 4 3 2 8 8 C 1.46896 * 111.00506 * 184.91469 * 7 4 3 9 9 C 1.53001 * 109.47457 * 185.46446 * 8 7 4 10 10 C 1.50699 * 115.54753 * 305.30432 * 9 8 7 11 11 H 1.08000 * 120.00125 * 275.48338 * 10 9 8 12 12 C 1.37879 * 120.00010 * 95.20273 * 10 9 8 13 13 N 1.31512 * 120.00161 * 175.53896 * 12 10 9 14 14 Si 1.86804 * 120.00054 * 355.54469 * 12 10 9 15 15 H 1.48502 * 109.47117 * 94.99232 * 14 12 10 16 16 H 1.48499 * 109.46965 * 214.99713 * 14 12 10 17 17 H 1.48502 * 109.46556 * 334.99689 * 14 12 10 18 18 C 1.52998 * 117.49873 * 90.97195 * 9 8 7 19 19 C 1.52996 * 117.49790 * 159.63555 * 9 8 7 20 20 H 1.09001 * 109.47005 * 300.00435 * 1 2 3 21 21 H 1.09006 * 109.46550 * 59.99971 * 1 2 3 22 22 H 1.08996 * 109.47723 * 179.97438 * 1 2 3 23 23 H 1.09001 * 109.47183 * 60.00000 * 3 2 1 24 24 H 1.08997 * 109.47513 * 299.99877 * 3 2 1 25 25 H 1.09004 * 109.47311 * 179.97438 * 5 4 3 26 26 H 1.08997 * 109.47596 * 300.00245 * 5 4 3 27 27 H 1.09007 * 109.47096 * 60.00177 * 5 4 3 28 28 H 1.09001 * 109.47193 * 299.99740 * 6 4 3 29 29 H 1.08993 * 109.47545 * 60.00249 * 6 4 3 30 30 H 1.09004 * 109.46824 * 179.97438 * 6 4 3 31 31 H 1.00907 * 111.00083 * 308.87356 * 7 4 3 32 32 H 1.09001 * 109.46850 * 65.46358 * 8 7 4 33 33 H 1.09001 * 109.46912 * 305.46342 * 8 7 4 34 34 H 0.97002 * 120.00305 * 180.02562 * 13 12 10 35 35 H 1.08994 * 117.50054 * 215.00265 * 18 9 8 36 36 H 1.08996 * 117.49805 * 0.02945 * 18 9 8 37 37 H 1.08992 * 117.50211 * 359.97438 * 19 9 8 38 38 H 1.09002 * 117.49676 * 144.97364 * 19 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1845 0.0006 5 6 3.9958 0.5309 -1.3039 6 6 3.9784 0.3243 1.1859 7 7 4.1327 2.5216 0.1157 8 6 5.5959 2.4563 0.0027 9 6 6.1899 3.8422 0.2624 10 6 5.6468 4.9538 -0.5981 11 1 6.0612 5.1283 -1.5800 12 6 4.6169 5.7444 -0.1341 13 7 4.2017 6.7687 -0.8468 14 14 3.8112 5.3607 1.5071 15 1 4.4457 6.1773 2.5729 16 1 2.3629 5.6805 1.4343 17 1 3.9849 3.9191 1.8185 18 6 6.5748 4.1872 1.7024 19 6 7.6648 3.9149 0.6626 20 1 -0.3633 0.5139 0.8900 21 1 -0.3633 0.5139 -0.8901 22 1 -0.3634 -1.0276 -0.0005 23 1 1.6887 1.8463 0.8900 24 1 1.6888 1.8463 -0.8899 25 1 5.0825 0.4452 -1.3036 26 1 3.5528 -0.4613 -1.3893 27 1 3.6803 1.1437 -2.1484 28 1 3.6505 0.7900 2.1154 29 1 3.5354 -0.6678 1.1006 30 1 5.0650 0.2379 1.1861 31 1 3.7447 3.1513 -0.5707 32 1 5.8684 2.1263 -0.9998 33 1 5.9858 1.7506 0.7362 34 1 3.4774 7.3251 -0.5202 35 1 6.4353 5.2182 2.0274 36 1 6.4053 3.4268 2.4646 37 1 8.2118 2.9755 0.7414 38 1 8.2424 4.7666 0.3033 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000125389343.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:39:33 Heat of formation + Delta-G solvation = -15.602915 kcal Electronic energy + Delta-G solvation = -16944.724381 eV Core-core repulsion = 14402.478581 eV Total energy + Delta-G solvation = -2542.245800 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -38.76035 -37.25469 -35.66593 -31.98818 -30.43741 -27.33396 -26.94434 -26.04168 -25.46320 -23.85500 -21.50639 -19.01080 -18.65790 -16.41485 -16.31393 -15.71648 -15.45787 -14.65059 -14.20734 -14.09485 -13.72504 -13.23958 -12.97706 -12.52605 -12.31474 -12.11524 -11.74511 -11.57032 -11.33333 -11.25249 -10.97501 -10.74741 -10.37233 -10.24609 -10.19340 -9.80791 -9.54112 -9.42064 -8.92367 -8.57287 -8.36861 -7.32951 -6.01198 -4.07446 3.47817 3.58844 3.78199 3.92660 4.66317 4.83788 5.08317 5.15286 5.25654 5.32424 5.36558 5.37032 5.53455 5.62547 5.75486 5.83352 5.90429 6.02161 6.11432 6.15242 6.20233 6.30241 6.32398 6.42913 6.49926 6.58868 6.64165 6.69554 6.83718 7.12676 7.21893 7.25934 7.83278 7.90859 8.18903 8.56851 8.98722 9.62913 11.08453 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.026463 B = 0.009784 C = 0.008406 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1057.837154 B = 2861.240337 C = 3330.249280 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.388 6.388 3 C 0.072 3.928 4 C 0.108 3.892 5 C -0.175 4.175 6 C -0.128 4.128 7 N -0.663 5.663 8 C 0.102 3.898 9 C 0.009 3.991 10 C -0.495 4.495 11 H 0.071 0.929 12 C 0.080 3.920 13 N -0.903 5.903 14 Si 0.859 3.141 15 H -0.298 1.298 16 H -0.306 1.306 17 H -0.193 1.193 18 C -0.194 4.194 19 C -0.187 4.187 20 H 0.039 0.961 21 H 0.038 0.962 22 H 0.082 0.918 23 H 0.057 0.943 24 H 0.047 0.953 25 H 0.058 0.942 26 H 0.058 0.942 27 H 0.052 0.948 28 H 0.056 0.944 29 H 0.058 0.942 30 H 0.052 0.948 31 H 0.353 0.647 32 H 0.027 0.973 33 H 0.052 0.948 34 H 0.262 0.738 35 H 0.082 0.918 36 H 0.073 0.927 37 H 0.069 0.931 38 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.060 -12.725 2.745 13.636 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.306 6.306 3 C -0.005 4.005 4 C 0.017 3.983 5 C -0.234 4.234 6 C -0.186 4.186 7 N -0.298 5.298 8 C -0.027 4.027 9 C 0.008 3.992 10 C -0.532 4.532 11 H 0.089 0.911 12 C -0.123 4.123 13 N -0.540 5.540 14 Si 0.687 3.313 15 H -0.226 1.226 16 H -0.234 1.234 17 H -0.115 1.115 18 C -0.232 4.232 19 C -0.225 4.225 20 H 0.058 0.942 21 H 0.057 0.943 22 H 0.100 0.900 23 H 0.075 0.925 24 H 0.066 0.934 25 H 0.077 0.923 26 H 0.077 0.923 27 H 0.071 0.929 28 H 0.075 0.925 29 H 0.077 0.923 30 H 0.071 0.929 31 H 0.174 0.826 32 H 0.045 0.955 33 H 0.070 0.930 34 H 0.072 0.928 35 H 0.100 0.900 36 H 0.091 0.909 37 H 0.087 0.913 38 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -4.089 -12.771 3.409 13.836 hybrid contribution -0.623 0.329 -0.169 0.725 sum -4.712 -12.442 3.240 13.693 Atomic orbital electron populations 1.22693 0.81580 1.02195 0.99943 1.87809 1.19098 1.28276 1.95444 1.22508 0.93496 0.83889 1.00649 1.20840 0.91662 0.91024 0.94773 1.22485 1.01610 1.01289 0.98004 1.21736 1.00672 0.98714 0.97481 1.60849 1.05999 1.06418 1.56496 1.21523 0.86771 0.96574 0.97859 1.19382 0.92384 0.94204 0.93272 1.20248 1.18144 1.12260 1.02563 0.91070 1.25024 0.95995 0.93696 0.97540 1.69942 1.28210 1.16669 1.39184 0.87233 0.76695 0.83793 0.83565 1.22560 1.23439 1.11463 1.22863 1.05853 1.00771 0.93664 1.22874 0.93110 1.00768 1.05751 0.94245 0.94288 0.89988 0.92505 0.93424 0.92279 0.92253 0.92928 0.92460 0.92321 0.92863 0.82596 0.95488 0.93012 0.92848 0.89993 0.90888 0.91298 0.89777 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.36 11.01 101.05 1.11 1.47 16 2 O -0.39 -5.56 9.36 -35.23 -0.33 -5.89 16 3 C 0.07 1.11 5.02 37.16 0.19 1.30 16 4 C 0.11 1.77 0.82 -131.60 -0.11 1.66 16 5 C -0.17 -2.67 7.97 37.16 0.30 -2.37 16 6 C -0.13 -1.96 8.19 37.16 0.30 -1.65 16 7 N -0.66 -12.89 3.11 -99.97 -0.31 -13.20 16 8 C 0.10 2.01 4.72 -3.83 -0.02 1.99 16 9 C 0.01 0.20 1.37 -155.66 -0.21 -0.01 16 10 C -0.49 -13.52 8.70 -34.44 -0.30 -13.82 16 11 H 0.07 2.15 8.06 -52.49 -0.42 1.73 16 12 C 0.08 2.26 5.21 -17.82 -0.09 2.16 16 13 N -0.90 -27.37 13.96 55.43 0.77 -26.60 16 14 Si 0.86 21.35 23.15 -169.99 -3.94 17.42 16 15 H -0.30 -7.65 7.08 56.52 0.40 -7.25 16 16 H -0.31 -7.82 7.11 56.52 0.40 -7.42 16 17 H -0.19 -4.45 5.02 56.52 0.28 -4.17 16 18 C -0.19 -4.22 7.25 -26.69 -0.19 -4.41 16 19 C -0.19 -3.85 9.96 -26.69 -0.27 -4.12 16 20 H 0.04 0.41 8.14 -51.93 -0.42 -0.02 16 21 H 0.04 0.40 8.14 -51.93 -0.42 -0.02 16 22 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 23 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 24 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 25 H 0.06 0.90 6.46 -51.93 -0.34 0.56 16 26 H 0.06 0.85 7.82 -51.93 -0.41 0.44 16 27 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 28 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 29 H 0.06 0.83 7.56 -51.93 -0.39 0.44 16 30 H 0.05 0.79 6.41 -51.93 -0.33 0.46 16 31 H 0.35 7.53 7.12 -39.29 -0.28 7.25 16 32 H 0.03 0.53 6.56 -51.93 -0.34 0.19 16 33 H 0.05 0.95 6.14 -51.93 -0.32 0.63 16 34 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 35 H 0.08 1.92 6.55 -51.93 -0.34 1.58 16 36 H 0.07 1.45 8.14 -51.93 -0.42 1.03 16 37 H 0.07 1.24 8.14 -51.93 -0.42 0.81 16 38 H 0.08 1.78 8.14 -51.93 -0.42 1.35 16 LS Contribution 291.38 15.07 4.39 4.39 Total: -1.00 -29.51 291.38 -5.35 -34.87 By element: Atomic # 1 Polarization: 13.47 SS G_CDS: -6.65 Total: 6.82 kcal Atomic # 6 Polarization: -18.51 SS G_CDS: 0.71 Total: -17.80 kcal Atomic # 7 Polarization: -40.26 SS G_CDS: 0.46 Total: -39.80 kcal Atomic # 8 Polarization: -5.56 SS G_CDS: -0.33 Total: -5.89 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -3.94 Total: 17.42 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -29.51 -5.35 -34.87 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000125389343.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.263 kcal (2) G-P(sol) polarization free energy of solvation -29.513 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.250 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.353 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.866 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.603 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds