Wall clock time and date at job start Sun Mar 29 2020 21:39:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42895 * 114.00452 * 2 1 4 4 C 1.52999 * 109.47199 * 179.97438 * 3 2 1 5 5 C 1.52995 * 109.47151 * 64.76631 * 4 3 2 6 6 C 1.53000 * 109.47108 * 304.76820 * 4 3 2 7 7 N 1.46900 * 109.47400 * 184.76648 * 4 3 2 8 8 C 1.46896 * 111.00506 * 184.91469 * 7 4 3 9 9 C 1.53001 * 109.47457 * 185.46446 * 8 7 4 10 10 C 1.50699 * 115.54753 * 305.30432 * 9 8 7 11 11 H 1.08000 * 120.00125 * 275.48338 * 10 9 8 12 12 C 1.37879 * 120.00010 * 95.20273 * 10 9 8 13 13 N 1.31512 * 120.00161 * 175.53896 * 12 10 9 14 14 Si 1.86804 * 120.00054 * 355.54469 * 12 10 9 15 15 H 1.48502 * 109.47117 * 94.99232 * 14 12 10 16 16 H 1.48499 * 109.46965 * 214.99713 * 14 12 10 17 17 H 1.48502 * 109.46556 * 334.99689 * 14 12 10 18 18 C 1.52998 * 117.49873 * 90.97195 * 9 8 7 19 19 C 1.52996 * 117.49790 * 159.63555 * 9 8 7 20 20 H 1.09001 * 109.47005 * 300.00435 * 1 2 3 21 21 H 1.09006 * 109.46550 * 59.99971 * 1 2 3 22 22 H 1.08996 * 109.47723 * 179.97438 * 1 2 3 23 23 H 1.09001 * 109.47183 * 60.00000 * 3 2 1 24 24 H 1.08997 * 109.47513 * 299.99877 * 3 2 1 25 25 H 1.09004 * 109.47311 * 179.97438 * 5 4 3 26 26 H 1.08997 * 109.47596 * 300.00245 * 5 4 3 27 27 H 1.09007 * 109.47096 * 60.00177 * 5 4 3 28 28 H 1.09001 * 109.47193 * 299.99740 * 6 4 3 29 29 H 1.08993 * 109.47545 * 60.00249 * 6 4 3 30 30 H 1.09004 * 109.46824 * 179.97438 * 6 4 3 31 31 H 1.00907 * 111.00083 * 308.87356 * 7 4 3 32 32 H 1.09001 * 109.46850 * 65.46358 * 8 7 4 33 33 H 1.09001 * 109.46912 * 305.46342 * 8 7 4 34 34 H 0.97002 * 120.00305 * 180.02562 * 13 12 10 35 35 H 1.08994 * 117.50054 * 215.00265 * 18 9 8 36 36 H 1.08996 * 117.49805 * 0.02945 * 18 9 8 37 37 H 1.08992 * 117.50211 * 359.97438 * 19 9 8 38 38 H 1.09002 * 117.49676 * 144.97364 * 19 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1845 0.0006 5 6 3.9958 0.5309 -1.3039 6 6 3.9784 0.3243 1.1859 7 7 4.1327 2.5216 0.1157 8 6 5.5959 2.4563 0.0027 9 6 6.1899 3.8422 0.2624 10 6 5.6468 4.9538 -0.5981 11 1 6.0612 5.1283 -1.5800 12 6 4.6169 5.7444 -0.1341 13 7 4.2017 6.7687 -0.8468 14 14 3.8112 5.3607 1.5071 15 1 4.4457 6.1773 2.5729 16 1 2.3629 5.6805 1.4343 17 1 3.9849 3.9191 1.8185 18 6 6.5748 4.1872 1.7024 19 6 7.6648 3.9149 0.6626 20 1 -0.3633 0.5139 0.8900 21 1 -0.3633 0.5139 -0.8901 22 1 -0.3634 -1.0276 -0.0005 23 1 1.6887 1.8463 0.8900 24 1 1.6888 1.8463 -0.8899 25 1 5.0825 0.4452 -1.3036 26 1 3.5528 -0.4613 -1.3893 27 1 3.6803 1.1437 -2.1484 28 1 3.6505 0.7900 2.1154 29 1 3.5354 -0.6678 1.1006 30 1 5.0650 0.2379 1.1861 31 1 3.7447 3.1513 -0.5707 32 1 5.8684 2.1263 -0.9998 33 1 5.9858 1.7506 0.7362 34 1 3.4774 7.3251 -0.5202 35 1 6.4353 5.2182 2.0274 36 1 6.4053 3.4268 2.4646 37 1 8.2118 2.9755 0.7414 38 1 8.2424 4.7666 0.3033 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000125389343.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:39:32 Heat of formation + Delta-G solvation = -35.420773 kcal Electronic energy + Delta-G solvation = -16945.583748 eV Core-core repulsion = 14402.478581 eV Total energy + Delta-G solvation = -2543.105167 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.06824 -38.71305 -37.05049 -34.15601 -31.83449 -28.41329 -28.13637 -27.77727 -26.97002 -25.29198 -23.19600 -20.74096 -20.08208 -18.33375 -17.45254 -16.95304 -16.71092 -16.57458 -15.61911 -15.40463 -15.31513 -14.64783 -14.42147 -14.18952 -13.77620 -13.70530 -13.03992 -12.97815 -12.81297 -12.60246 -12.29945 -12.12912 -12.05724 -11.92036 -11.62777 -11.52649 -11.27897 -10.79046 -10.62710 -10.59729 -10.19344 -8.88566 -8.21696 -6.30395 1.47175 1.55488 1.92455 2.57165 2.65751 3.14945 3.28876 3.69438 3.94494 3.98286 4.23592 4.28021 4.45066 4.46913 4.51482 4.61361 4.62488 4.68467 4.74778 4.83214 4.86002 4.91690 4.94628 4.99948 5.06879 5.13273 5.17071 5.33209 5.44596 5.47068 5.55164 5.82905 6.19411 6.33785 6.42420 6.58588 6.80810 7.43109 8.91494 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.026463 B = 0.009784 C = 0.008406 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1057.837154 B = 2861.240337 C = 3330.249280 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.397 6.397 3 C 0.076 3.924 4 C 0.105 3.895 5 C -0.167 4.167 6 C -0.122 4.122 7 N -0.675 5.675 8 C 0.112 3.888 9 C -0.017 4.017 10 C -0.488 4.488 11 H 0.025 0.975 12 C 0.031 3.969 13 N -0.954 5.954 14 Si 0.920 3.080 15 H -0.308 1.308 16 H -0.318 1.318 17 H -0.160 1.160 18 C -0.191 4.191 19 C -0.171 4.171 20 H 0.045 0.955 21 H 0.042 0.958 22 H 0.105 0.895 23 H 0.050 0.950 24 H 0.041 0.959 25 H 0.060 0.940 26 H 0.070 0.930 27 H 0.041 0.959 28 H 0.052 0.948 29 H 0.069 0.931 30 H 0.058 0.942 31 H 0.338 0.662 32 H 0.025 0.975 33 H 0.077 0.923 34 H 0.261 0.739 35 H 0.059 0.941 36 H 0.102 0.898 37 H 0.107 0.893 38 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.987 -15.427 4.340 16.514 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.315 6.315 3 C -0.002 4.002 4 C 0.014 3.986 5 C -0.226 4.226 6 C -0.180 4.180 7 N -0.307 5.307 8 C -0.017 4.017 9 C -0.018 4.018 10 C -0.525 4.525 11 H 0.044 0.956 12 C -0.166 4.166 13 N -0.594 5.594 14 Si 0.747 3.253 15 H -0.236 1.236 16 H -0.246 1.246 17 H -0.080 1.080 18 C -0.228 4.228 19 C -0.209 4.209 20 H 0.063 0.937 21 H 0.061 0.939 22 H 0.123 0.877 23 H 0.069 0.931 24 H 0.059 0.941 25 H 0.079 0.921 26 H 0.089 0.911 27 H 0.060 0.940 28 H 0.071 0.929 29 H 0.088 0.912 30 H 0.077 0.923 31 H 0.157 0.843 32 H 0.043 0.957 33 H 0.096 0.904 34 H 0.069 0.931 35 H 0.078 0.922 36 H 0.120 0.880 37 H 0.125 0.875 38 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -3.998 -15.512 5.007 16.783 hybrid contribution -0.618 1.169 -0.764 1.527 sum -4.616 -14.342 4.244 15.653 Atomic orbital electron populations 1.22926 0.79821 1.03913 1.00435 1.87778 1.20985 1.27285 1.95496 1.22365 0.93190 0.84538 1.00072 1.20945 0.92108 0.89639 0.95925 1.22394 1.01688 1.01518 0.97013 1.21687 1.01043 0.98840 0.96396 1.60809 1.05884 1.08032 1.55990 1.21392 0.86946 0.94759 0.98555 1.19389 0.94470 0.94323 0.93596 1.20417 1.17358 1.13403 1.01331 0.95648 1.25764 0.96680 0.93431 1.00734 1.70082 1.29456 1.18494 1.41375 0.86371 0.74673 0.85085 0.79185 1.23649 1.24648 1.07979 1.22868 1.05988 1.00401 0.93524 1.22921 0.92025 1.02047 1.03901 0.93681 0.93897 0.87698 0.93138 0.94058 0.92088 0.91095 0.94030 0.92918 0.91195 0.92276 0.84338 0.95669 0.90435 0.93074 0.92205 0.88010 0.87504 0.91114 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.49 11.01 113.37 1.25 1.74 16 2 O -0.40 -10.38 9.36 -148.98 -1.39 -11.77 16 3 C 0.08 2.21 5.02 71.98 0.36 2.57 16 4 C 0.10 3.16 0.82 3.53 0.00 3.16 16 5 C -0.17 -4.73 7.97 71.98 0.57 -4.16 16 6 C -0.12 -3.27 8.19 71.98 0.59 -2.68 16 7 N -0.67 -24.84 3.11 -470.19 -1.46 -26.30 16 8 C 0.11 4.14 4.72 86.30 0.41 4.54 16 9 C -0.02 -0.73 1.37 -52.93 -0.07 -0.80 16 10 C -0.49 -27.13 8.70 25.60 0.22 -26.91 16 11 H 0.03 1.60 8.06 -2.91 -0.02 1.58 16 12 C 0.03 1.80 5.21 84.66 0.44 2.24 16 13 N -0.95 -59.98 13.96 21.45 0.30 -59.68 16 14 Si 0.92 44.61 23.15 68.60 1.59 46.19 16 15 H -0.31 -15.36 7.08 99.48 0.70 -14.65 16 16 H -0.32 -15.89 7.11 99.48 0.71 -15.18 16 17 H -0.16 -6.83 5.02 99.48 0.50 -6.33 16 18 C -0.19 -7.73 7.25 30.62 0.22 -7.51 16 19 C -0.17 -6.58 9.96 30.62 0.30 -6.28 16 20 H 0.04 0.83 8.14 -2.39 -0.02 0.81 16 21 H 0.04 0.80 8.14 -2.38 -0.02 0.78 16 22 H 0.10 1.55 8.14 -2.39 -0.02 1.53 16 23 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 24 H 0.04 1.24 8.14 -2.39 -0.02 1.22 16 25 H 0.06 1.69 6.46 -2.38 -0.02 1.67 16 26 H 0.07 1.83 7.82 -2.39 -0.02 1.82 16 27 H 0.04 1.24 8.14 -2.38 -0.02 1.23 16 28 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 29 H 0.07 1.72 7.56 -2.39 -0.02 1.70 16 30 H 0.06 1.50 6.41 -2.38 -0.02 1.48 16 31 H 0.34 14.22 7.12 -89.69 -0.64 13.58 16 32 H 0.03 0.94 6.56 -2.39 -0.02 0.92 16 33 H 0.08 2.49 6.14 -2.39 -0.01 2.47 16 34 H 0.26 15.62 8.31 -92.71 -0.77 14.85 16 35 H 0.06 2.70 6.55 -2.39 -0.02 2.68 16 36 H 0.10 3.56 8.14 -2.39 -0.02 3.54 16 37 H 0.11 3.33 8.14 -2.39 -0.02 3.31 16 38 H 0.07 2.89 8.14 -2.39 -0.02 2.87 16 Total: -1.00 -64.31 291.38 3.50 -60.81 By element: Atomic # 1 Polarization: 24.66 SS G_CDS: 0.17 Total: 24.83 kcal Atomic # 6 Polarization: -38.38 SS G_CDS: 4.30 Total: -34.08 kcal Atomic # 7 Polarization: -84.82 SS G_CDS: -1.16 Total: -85.98 kcal Atomic # 8 Polarization: -10.38 SS G_CDS: -1.39 Total: -11.77 kcal Atomic # 14 Polarization: 44.61 SS G_CDS: 1.59 Total: 46.19 kcal Total: -64.31 3.50 -60.81 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000125389343.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.386 kcal (2) G-P(sol) polarization free energy of solvation -64.311 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.925 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.504 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.807 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.421 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds