Wall clock time and date at job start Sun Mar 29 2020 21:48:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52997 * 109.47436 * 2 1 4 4 H 1.09002 * 109.47033 * 302.41289 * 3 2 1 5 5 C 1.50700 * 109.47319 * 182.41086 * 3 2 1 6 6 H 1.08005 * 119.99906 * 239.99553 * 5 3 2 7 7 C 1.37870 * 120.00002 * 59.99974 * 5 3 2 8 8 N 1.31517 * 120.00232 * 0.02562 * 7 5 3 9 9 Si 1.86802 * 120.00031 * 179.97438 * 7 5 3 10 10 H 1.48499 * 109.46837 * 90.00500 * 9 7 5 11 11 H 1.48503 * 109.47215 * 210.00038 * 9 7 5 12 12 H 1.48494 * 109.47299 * 330.00383 * 9 7 5 13 13 N 1.46899 * 109.46956 * 62.41156 * 3 2 1 14 14 C 1.46851 * 111.00114 * 189.69220 * 13 3 2 15 15 C 1.53034 * 109.52631 * 174.15927 * 14 13 3 16 16 C 1.53125 * 109.27745 * 59.17714 * 15 14 13 17 17 H 1.08997 * 109.52260 * 182.43823 * 16 15 14 18 18 O 1.42901 * 109.51906 * 62.32035 * 16 15 14 19 19 C 1.53117 * 109.16174 * 302.34552 * 16 15 14 20 20 H 1.08990 * 109.50566 * 297.67319 * 19 16 15 21 21 C 1.53003 * 109.50106 * 177.59159 * 19 16 15 22 22 C 1.46848 * 111.00318 * 65.48235 * 13 3 2 23 23 H 1.09001 * 109.47063 * 294.66350 * 1 2 3 24 24 H 1.09000 * 109.47104 * 54.66449 * 1 2 3 25 25 H 1.09002 * 109.47230 * 174.66236 * 1 2 3 26 26 H 1.09005 * 109.47152 * 239.99840 * 2 1 3 27 27 H 1.09000 * 109.46878 * 120.00230 * 2 1 3 28 28 H 0.96994 * 120.00080 * 180.02562 * 8 7 5 29 29 H 1.08999 * 109.46341 * 294.17892 * 14 13 3 30 30 H 1.08999 * 109.46232 * 54.14110 * 14 13 3 31 31 H 1.08998 * 109.50896 * 179.11929 * 15 14 13 32 32 H 1.09000 * 109.50477 * 299.24170 * 15 14 13 33 33 H 0.96688 * 114.00519 * 59.99412 * 18 16 15 34 34 H 1.09001 * 109.46712 * 60.00531 * 21 19 16 35 35 H 1.09002 * 109.46878 * 180.02562 * 21 19 16 36 36 H 1.08998 * 109.46928 * 300.00246 * 21 19 16 37 37 H 1.08999 * 109.45993 * 305.85700 * 22 13 3 38 38 H 1.08999 * 109.45856 * 65.82298 * 22 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6418 1.9686 -0.8676 5 6 3.5459 1.4428 -0.0598 6 1 4.1177 1.8993 0.7347 7 6 4.1935 0.8606 -1.1286 8 7 3.4972 0.3052 -2.0963 9 14 6.0600 0.8617 -1.2030 10 1 6.5825 -0.3601 -0.5402 11 1 6.4988 0.8813 -2.6216 12 1 6.5825 2.0646 -0.5066 13 7 1.5986 2.1179 1.2275 14 6 1.8690 3.5598 1.1612 15 6 1.2676 4.2499 2.3875 16 6 1.8840 3.6538 3.6562 17 1 1.4271 4.1121 4.5332 18 8 3.2911 3.9029 3.6657 19 6 1.6300 2.1440 3.6768 20 1 0.5570 1.9559 3.7101 21 6 2.2946 1.5311 4.9112 22 6 2.2210 1.5149 2.4130 23 1 -0.3633 0.4288 0.9339 24 1 -0.3633 0.5944 -0.8383 25 1 -0.3634 -1.0232 -0.0956 26 1 1.8933 -0.5139 -0.8900 27 1 1.8933 -0.5139 0.8900 28 1 3.9528 -0.1047 -2.8480 29 1 2.9459 3.7268 1.1421 30 1 1.4217 3.9719 0.2567 31 1 1.4819 5.3178 2.3459 32 1 0.1887 4.0949 2.3999 33 1 3.5246 4.8411 3.6492 34 1 1.8758 1.9821 5.8108 35 1 2.1139 0.4563 4.9251 36 1 3.3679 1.7183 4.8766 37 1 2.0294 0.4419 2.4177 38 1 3.2963 1.6916 2.3881 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000126943832.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:48:27 Heat of formation + Delta-G solvation = -62.975150 kcal Electronic energy + Delta-G solvation = -17325.899473 eV Core-core repulsion = 14781.599459 eV Total energy + Delta-G solvation = -2544.300014 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.06385 -36.14645 -33.62875 -32.23976 -31.48157 -29.84553 -26.48769 -25.81565 -23.69261 -22.44413 -21.05918 -19.40883 -18.86278 -16.63278 -16.11756 -15.23224 -14.59168 -14.49508 -14.04670 -13.55460 -13.25237 -13.00555 -12.64278 -12.15642 -11.96360 -11.63259 -11.47110 -11.22691 -11.05501 -11.02248 -10.78025 -10.63526 -10.43556 -10.20510 -9.91656 -9.80183 -9.59454 -9.37851 -9.15370 -8.94967 -8.30254 -6.99097 -5.92050 -4.04584 3.31039 3.37905 3.42166 4.45598 4.59519 5.07386 5.17885 5.27289 5.31956 5.41657 5.63561 5.92278 6.00066 6.06650 6.18226 6.23413 6.28072 6.39401 6.42284 6.51098 6.58999 6.66319 6.71430 6.81415 6.91596 7.11401 7.17547 7.24839 7.43836 7.68744 7.83979 7.97806 8.07237 8.25141 8.42727 8.56924 9.06730 9.62698 11.06988 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.024315 B = 0.010338 C = 0.008796 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1151.278804 B = 2707.823272 C = 3182.562028 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.110 4.110 3 C 0.214 3.786 4 H 0.036 0.964 5 C -0.539 4.539 6 H 0.059 0.941 7 C 0.067 3.933 8 N -0.888 5.888 9 Si 0.886 3.114 10 H -0.281 1.281 11 H -0.287 1.287 12 H -0.276 1.276 13 N -0.535 5.535 14 C 0.068 3.932 15 C -0.149 4.149 16 C 0.111 3.889 17 H 0.041 0.959 18 O -0.558 6.558 19 C -0.084 4.084 20 H 0.078 0.922 21 C -0.140 4.140 22 C 0.072 3.928 23 H 0.045 0.955 24 H 0.038 0.962 25 H 0.024 0.976 26 H 0.091 0.909 27 H 0.032 0.968 28 H 0.260 0.740 29 H 0.041 0.959 30 H 0.058 0.942 31 H 0.056 0.944 32 H 0.070 0.930 33 H 0.368 0.632 34 H 0.044 0.956 35 H 0.051 0.949 36 H 0.060 0.940 37 H 0.065 0.935 38 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.051 5.133 9.520 11.550 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.149 4.149 3 C 0.108 3.892 4 H 0.054 0.946 5 C -0.578 4.578 6 H 0.077 0.923 7 C -0.135 4.135 8 N -0.527 5.527 9 Si 0.714 3.286 10 H -0.208 1.208 11 H -0.213 1.213 12 H -0.201 1.201 13 N -0.259 5.259 14 C -0.061 4.061 15 C -0.187 4.187 16 C 0.052 3.948 17 H 0.059 0.941 18 O -0.362 6.362 19 C -0.103 4.103 20 H 0.096 0.904 21 C -0.197 4.197 22 C -0.056 4.056 23 H 0.064 0.936 24 H 0.057 0.943 25 H 0.043 0.957 26 H 0.109 0.891 27 H 0.051 0.949 28 H 0.070 0.930 29 H 0.059 0.941 30 H 0.077 0.923 31 H 0.074 0.926 32 H 0.089 0.911 33 H 0.214 0.786 34 H 0.063 0.937 35 H 0.070 0.930 36 H 0.079 0.921 37 H 0.084 0.916 38 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -4.525 4.314 9.376 11.269 hybrid contribution 1.883 0.722 -0.257 2.033 sum -2.642 5.036 9.118 10.746 Atomic orbital electron populations 1.21688 0.98919 0.98227 1.00482 1.21593 0.92117 0.99265 1.01900 1.19253 0.92670 0.90925 0.86340 0.94640 1.21802 0.92795 1.36918 1.06264 0.92311 1.24909 0.97839 0.95193 0.95566 1.69880 1.34872 1.37974 1.09964 0.86694 0.86464 0.78410 0.77030 1.20754 1.21320 1.20061 1.62403 1.57838 1.01567 1.04135 1.21713 0.98884 0.90056 0.95443 1.22318 1.01188 0.98507 0.96660 1.21819 0.81185 0.96439 0.95316 0.94070 1.86580 1.23168 1.29256 1.97244 1.21266 1.00194 0.92562 0.96244 0.90402 1.21692 1.01576 1.00009 0.96468 1.21845 0.97577 0.97959 0.88242 0.93570 0.94265 0.95718 0.89103 0.94901 0.93028 0.94087 0.92313 0.92560 0.91106 0.78647 0.93661 0.93001 0.92052 0.91644 0.93481 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.80 9.71 37.16 0.36 -2.44 16 2 C -0.11 -2.66 5.09 -26.73 -0.14 -2.79 16 3 C 0.21 5.36 1.73 -68.87 -0.12 5.24 16 4 H 0.04 0.99 7.99 -51.93 -0.42 0.57 16 5 C -0.54 -14.68 7.23 -34.44 -0.25 -14.93 16 6 H 0.06 1.65 5.84 -52.48 -0.31 1.34 16 7 C 0.07 1.85 5.30 -17.82 -0.09 1.76 16 8 N -0.89 -25.30 11.30 55.43 0.63 -24.67 16 9 Si 0.89 21.63 29.54 -169.99 -5.02 16.61 16 10 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 11 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 12 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 13 N -0.54 -11.43 4.05 -228.08 -0.92 -12.35 16 14 C 0.07 1.33 5.05 -3.83 -0.02 1.31 16 15 C -0.15 -2.26 5.79 -26.65 -0.15 -2.41 16 16 C 0.11 1.66 3.26 -26.61 -0.09 1.57 16 17 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 18 O -0.56 -8.72 11.43 -35.23 -0.40 -9.12 16 19 C -0.08 -1.37 2.72 -90.54 -0.25 -1.61 16 20 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 21 C -0.14 -2.04 9.03 37.16 0.34 -1.70 16 22 C 0.07 1.47 3.93 -3.83 -0.02 1.45 16 23 H 0.05 0.91 7.83 -51.93 -0.41 0.50 16 24 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 25 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 26 H 0.09 2.44 6.01 -51.93 -0.31 2.13 16 27 H 0.03 0.78 6.31 -51.93 -0.33 0.46 16 28 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 29 H 0.04 0.90 6.89 -51.93 -0.36 0.54 16 30 H 0.06 1.16 8.02 -51.93 -0.42 0.75 16 31 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 33 H 0.37 4.18 9.08 45.56 0.41 4.59 16 34 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.06 0.97 7.63 -51.93 -0.40 0.58 16 37 H 0.07 1.38 6.15 -51.93 -0.32 1.06 16 38 H 0.05 1.09 6.01 -51.93 -0.31 0.78 16 LS Contribution 287.70 15.07 4.34 4.34 Total: -1.00 -28.87 287.70 -7.48 -36.35 By element: Atomic # 1 Polarization: 9.10 SS G_CDS: -5.67 Total: 3.43 kcal Atomic # 6 Polarization: -14.15 SS G_CDS: -0.42 Total: -14.58 kcal Atomic # 7 Polarization: -36.73 SS G_CDS: -0.30 Total: -37.02 kcal Atomic # 8 Polarization: -8.72 SS G_CDS: -0.40 Total: -9.12 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.61 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -28.87 -7.48 -36.35 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000126943832.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.626 kcal (2) G-P(sol) polarization free energy of solvation -28.867 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.493 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.482 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.349 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.975 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds