Wall clock time and date at job start Sun Mar 29 2020 21:48:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52997 * 109.47436 * 2 1 4 4 H 1.09002 * 109.47033 * 302.41289 * 3 2 1 5 5 C 1.50700 * 109.47319 * 182.41086 * 3 2 1 6 6 H 1.08005 * 119.99906 * 239.99553 * 5 3 2 7 7 C 1.37870 * 120.00002 * 59.99974 * 5 3 2 8 8 N 1.31517 * 120.00232 * 0.02562 * 7 5 3 9 9 Si 1.86802 * 120.00031 * 179.97438 * 7 5 3 10 10 H 1.48499 * 109.46837 * 90.00500 * 9 7 5 11 11 H 1.48503 * 109.47215 * 210.00038 * 9 7 5 12 12 H 1.48494 * 109.47299 * 330.00383 * 9 7 5 13 13 N 1.46899 * 109.46956 * 62.41156 * 3 2 1 14 14 C 1.46851 * 111.00114 * 189.69220 * 13 3 2 15 15 C 1.53034 * 109.52631 * 174.15927 * 14 13 3 16 16 C 1.53125 * 109.27745 * 59.17714 * 15 14 13 17 17 H 1.08997 * 109.52260 * 182.43823 * 16 15 14 18 18 O 1.42901 * 109.51906 * 62.32035 * 16 15 14 19 19 C 1.53117 * 109.16174 * 302.34552 * 16 15 14 20 20 H 1.08990 * 109.50566 * 297.67319 * 19 16 15 21 21 C 1.53003 * 109.50106 * 177.59159 * 19 16 15 22 22 C 1.46848 * 111.00318 * 65.48235 * 13 3 2 23 23 H 1.09001 * 109.47063 * 294.66350 * 1 2 3 24 24 H 1.09000 * 109.47104 * 54.66449 * 1 2 3 25 25 H 1.09002 * 109.47230 * 174.66236 * 1 2 3 26 26 H 1.09005 * 109.47152 * 239.99840 * 2 1 3 27 27 H 1.09000 * 109.46878 * 120.00230 * 2 1 3 28 28 H 0.96994 * 120.00080 * 180.02562 * 8 7 5 29 29 H 1.08999 * 109.46341 * 294.17892 * 14 13 3 30 30 H 1.08999 * 109.46232 * 54.14110 * 14 13 3 31 31 H 1.08998 * 109.50896 * 179.11929 * 15 14 13 32 32 H 1.09000 * 109.50477 * 299.24170 * 15 14 13 33 33 H 0.96688 * 114.00519 * 59.99412 * 18 16 15 34 34 H 1.09001 * 109.46712 * 60.00531 * 21 19 16 35 35 H 1.09002 * 109.46878 * 180.02562 * 21 19 16 36 36 H 1.08998 * 109.46928 * 300.00246 * 21 19 16 37 37 H 1.08999 * 109.45993 * 305.85700 * 22 13 3 38 38 H 1.08999 * 109.45856 * 65.82298 * 22 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6418 1.9686 -0.8676 5 6 3.5459 1.4428 -0.0598 6 1 4.1177 1.8993 0.7347 7 6 4.1935 0.8606 -1.1286 8 7 3.4972 0.3052 -2.0963 9 14 6.0600 0.8617 -1.2030 10 1 6.5825 -0.3601 -0.5402 11 1 6.4988 0.8813 -2.6216 12 1 6.5825 2.0646 -0.5066 13 7 1.5986 2.1179 1.2275 14 6 1.8690 3.5598 1.1612 15 6 1.2676 4.2499 2.3875 16 6 1.8840 3.6538 3.6562 17 1 1.4271 4.1121 4.5332 18 8 3.2911 3.9029 3.6657 19 6 1.6300 2.1440 3.6768 20 1 0.5570 1.9559 3.7101 21 6 2.2946 1.5311 4.9112 22 6 2.2210 1.5149 2.4130 23 1 -0.3633 0.4288 0.9339 24 1 -0.3633 0.5944 -0.8383 25 1 -0.3634 -1.0232 -0.0956 26 1 1.8933 -0.5139 -0.8900 27 1 1.8933 -0.5139 0.8900 28 1 3.9528 -0.1047 -2.8480 29 1 2.9459 3.7268 1.1421 30 1 1.4217 3.9719 0.2567 31 1 1.4819 5.3178 2.3459 32 1 0.1887 4.0949 2.3999 33 1 3.5246 4.8411 3.6492 34 1 1.8758 1.9821 5.8108 35 1 2.1139 0.4563 4.9251 36 1 3.3679 1.7183 4.8766 37 1 2.0294 0.4419 2.4177 38 1 3.2963 1.6916 2.3881 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000126943832.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:48:27 Heat of formation + Delta-G solvation = -83.162845 kcal Electronic energy + Delta-G solvation = -17326.774877 eV Core-core repulsion = 14781.599459 eV Total energy + Delta-G solvation = -2545.175418 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.52034 -37.72858 -35.22537 -33.85625 -33.28284 -31.37630 -28.41818 -27.21801 -25.49497 -24.07153 -22.51834 -21.05678 -20.51971 -18.41707 -17.60605 -16.99830 -16.30700 -15.94624 -15.55819 -15.19839 -14.88396 -14.65386 -14.18221 -13.57269 -13.39278 -13.35494 -13.24615 -12.92901 -12.75331 -12.61541 -12.49665 -12.26481 -12.03054 -11.65675 -11.63954 -11.52226 -11.49614 -11.00838 -10.80798 -10.50194 -10.42907 -8.85981 -8.02477 -6.24952 1.33845 1.35548 1.44960 2.39039 3.14241 3.37032 3.62629 3.91395 4.01558 4.20983 4.32703 4.56150 4.62431 4.70280 4.74715 4.78765 4.85507 4.94019 4.95281 4.99103 5.06915 5.12683 5.22679 5.33745 5.35693 5.39135 5.44698 5.52590 5.60467 5.67442 5.80641 6.08652 6.24059 6.42738 6.74315 6.97442 7.03034 7.45435 8.91573 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.024315 B = 0.010338 C = 0.008796 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1151.278804 B = 2707.823272 C = 3182.562028 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.105 4.105 3 C 0.219 3.781 4 H 0.001 0.999 5 C -0.547 4.547 6 H 0.044 0.956 7 C 0.021 3.979 8 N -0.911 5.911 9 Si 0.944 3.056 10 H -0.277 1.277 11 H -0.280 1.280 12 H -0.277 1.277 13 N -0.528 5.528 14 C 0.066 3.934 15 C -0.138 4.138 16 C 0.112 3.888 17 H 0.079 0.921 18 O -0.581 6.581 19 C -0.083 4.083 20 H 0.092 0.908 21 C -0.134 4.134 22 C 0.080 3.920 23 H 0.057 0.943 24 H 0.033 0.967 25 H 0.044 0.956 26 H 0.060 0.940 27 H 0.028 0.972 28 H 0.261 0.739 29 H 0.011 0.989 30 H 0.048 0.952 31 H 0.084 0.916 32 H 0.082 0.918 33 H 0.386 0.614 34 H 0.073 0.927 35 H 0.053 0.947 36 H 0.042 0.958 37 H 0.051 0.949 38 H 0.011 0.989 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.812 5.955 11.334 13.677 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.143 4.143 3 C 0.112 3.888 4 H 0.019 0.981 5 C -0.586 4.586 6 H 0.062 0.938 7 C -0.179 4.179 8 N -0.551 5.551 9 Si 0.770 3.230 10 H -0.203 1.203 11 H -0.206 1.206 12 H -0.202 1.202 13 N -0.252 5.252 14 C -0.063 4.063 15 C -0.176 4.176 16 C 0.054 3.946 17 H 0.097 0.903 18 O -0.388 6.388 19 C -0.102 4.102 20 H 0.110 0.890 21 C -0.191 4.191 22 C -0.048 4.048 23 H 0.076 0.924 24 H 0.052 0.948 25 H 0.064 0.936 26 H 0.079 0.921 27 H 0.046 0.954 28 H 0.070 0.930 29 H 0.030 0.970 30 H 0.067 0.933 31 H 0.103 0.897 32 H 0.101 0.899 33 H 0.234 0.766 34 H 0.092 0.908 35 H 0.072 0.928 36 H 0.061 0.939 37 H 0.069 0.931 38 H 0.029 0.971 Dipole moment (debyes) X Y Z Total from point charges -5.286 5.154 11.201 13.416 hybrid contribution 2.131 0.487 -0.834 2.340 sum -3.155 5.642 10.367 12.217 Atomic orbital electron populations 1.21539 0.95989 0.99608 1.00867 1.21423 0.94683 0.98122 1.00085 1.19041 0.91334 0.91487 0.86982 0.98061 1.21975 0.94196 1.36619 1.05851 0.93769 1.25587 1.01803 0.95076 0.95397 1.69996 1.36264 1.38470 1.10325 0.85786 0.81760 0.78263 0.77197 1.20293 1.20556 1.20164 1.62392 1.57238 1.02478 1.03074 1.21773 0.97425 0.89271 0.97796 1.22273 1.01419 0.99588 0.94317 1.21874 0.81105 0.95316 0.96341 0.90345 1.86552 1.23766 1.31215 1.97294 1.21293 1.00724 0.93807 0.94365 0.89022 1.21637 1.00383 1.00371 0.96742 1.21776 0.95648 0.97568 0.89856 0.92362 0.94750 0.93649 0.92119 0.95374 0.92953 0.97027 0.93323 0.89713 0.89927 0.76572 0.90809 0.92775 0.93851 0.93083 0.97105 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.98 9.71 71.98 0.70 -4.28 16 2 C -0.10 -5.15 5.09 30.59 0.16 -4.99 16 3 C 0.22 11.30 1.73 44.17 0.08 11.38 16 4 H 0.00 0.08 7.99 -2.39 -0.02 0.07 16 5 C -0.55 -30.91 7.23 25.60 0.18 -30.73 16 6 H 0.04 2.59 5.84 -2.91 -0.02 2.57 16 7 C 0.02 1.19 5.30 84.65 0.45 1.64 16 8 N -0.91 -53.26 11.30 21.45 0.24 -53.02 16 9 Si 0.94 45.28 29.54 68.60 2.03 47.30 16 10 H -0.28 -13.04 7.11 99.48 0.71 -12.34 16 11 H -0.28 -13.05 7.11 99.48 0.71 -12.34 16 12 H -0.28 -13.20 7.11 99.48 0.71 -12.50 16 13 N -0.53 -22.74 4.05 -875.51 -3.54 -26.28 16 14 C 0.07 2.59 5.05 86.32 0.44 3.02 16 15 C -0.14 -3.81 5.79 30.65 0.18 -3.64 16 16 C 0.11 2.98 3.26 30.67 0.10 3.08 16 17 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 18 O -0.58 -17.05 11.43 -148.98 -1.70 -18.75 16 19 C -0.08 -2.53 2.72 -10.74 -0.03 -2.56 16 20 H 0.09 2.57 8.14 -2.39 -0.02 2.55 16 21 C -0.13 -3.58 9.03 71.98 0.65 -2.93 16 22 C 0.08 3.26 3.93 86.33 0.34 3.59 16 23 H 0.06 2.21 7.83 -2.39 -0.02 2.19 16 24 H 0.03 1.40 8.14 -2.39 -0.02 1.38 16 25 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 26 H 0.06 3.36 6.01 -2.38 -0.01 3.34 16 27 H 0.03 1.37 6.31 -2.39 -0.02 1.35 16 28 H 0.26 14.54 8.31 -92.71 -0.77 13.77 16 29 H 0.01 0.51 6.89 -2.39 -0.02 0.50 16 30 H 0.05 1.96 8.02 -2.39 -0.02 1.94 16 31 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 32 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 33 H 0.39 7.87 9.08 -74.07 -0.67 7.19 16 34 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 35 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 36 H 0.04 1.31 7.63 -2.39 -0.02 1.29 16 37 H 0.05 2.18 6.15 -2.39 -0.01 2.17 16 38 H 0.01 0.51 6.01 -2.39 -0.01 0.50 16 Total: -1.00 -64.01 287.70 0.62 -63.39 By element: Atomic # 1 Polarization: 13.41 SS G_CDS: 0.36 Total: 13.76 kcal Atomic # 6 Polarization: -29.65 SS G_CDS: 3.24 Total: -26.41 kcal Atomic # 7 Polarization: -76.00 SS G_CDS: -3.30 Total: -79.30 kcal Atomic # 8 Polarization: -17.05 SS G_CDS: -1.70 Total: -18.75 kcal Atomic # 14 Polarization: 45.28 SS G_CDS: 2.03 Total: 47.30 kcal Total: -64.01 0.62 -63.39 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000126943832.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.768 kcal (2) G-P(sol) polarization free energy of solvation -64.011 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.779 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.616 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.395 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.163 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds