Wall clock time and date at job start Sun Mar 29 2020 21:52:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53006 * 109.46626 * 2 1 4 4 H 1.08992 * 109.47046 * 304.99570 * 3 2 1 5 5 C 1.50699 * 109.46610 * 184.99834 * 3 2 1 6 6 H 1.08004 * 119.99731 * 239.99688 * 5 3 2 7 7 C 1.37871 * 120.00667 * 60.00191 * 5 3 2 8 8 N 1.31516 * 119.99699 * 359.97438 * 7 5 3 9 9 Si 1.86794 * 120.00537 * 179.97438 * 7 5 3 10 10 H 1.48496 * 109.47293 * 59.99662 * 9 7 5 11 11 H 1.48503 * 109.47416 * 179.97438 * 9 7 5 12 12 H 1.48506 * 109.47160 * 299.99720 * 9 7 5 13 13 N 1.46897 * 109.47346 * 65.00011 * 3 2 1 14 14 C 1.46901 * 110.99940 * 275.00087 * 13 3 2 15 15 H 1.08999 * 112.85190 * 23.79954 * 14 13 3 16 16 C 1.53788 * 113.61416 * 252.49757 * 14 13 3 17 17 C 1.53779 * 87.08005 * 220.01720 * 16 14 13 18 18 H 1.09004 * 113.61390 * 270.87960 * 17 16 14 19 19 O 1.42900 * 113.69028 * 139.99360 * 17 16 14 20 20 C 1.53779 * 87.08322 * 25.43238 * 17 16 14 21 21 C 1.53009 * 113.61171 * 220.02354 * 20 17 16 22 22 C 1.52990 * 113.69524 * 89.12676 * 20 17 16 23 23 H 1.09002 * 109.46719 * 180.02562 * 1 2 3 24 24 H 1.08993 * 109.47839 * 299.99931 * 1 2 3 25 25 H 1.09000 * 109.47160 * 60.00369 * 1 2 3 26 26 H 1.08993 * 109.47839 * 240.00069 * 2 1 3 27 27 H 1.09000 * 109.47160 * 119.99631 * 2 1 3 28 28 H 0.96999 * 120.00336 * 180.02562 * 8 7 5 29 29 H 1.00906 * 110.99841 * 38.94767 * 13 3 2 30 30 H 1.08998 * 113.60877 * 334.56800 * 16 14 13 31 31 H 1.08994 * 113.61522 * 105.46587 * 16 14 13 32 32 H 0.96696 * 114.00436 * 82.45900 * 19 17 16 33 33 H 1.09000 * 109.46732 * 157.49592 * 21 20 17 34 34 H 1.09000 * 109.46593 * 277.49319 * 21 20 17 35 35 H 1.08990 * 109.47183 * 37.49374 * 21 20 17 36 36 H 1.09005 * 109.46992 * 322.47026 * 22 20 17 37 37 H 1.09007 * 109.47033 * 82.46419 * 22 20 17 38 38 H 1.09001 * 109.47697 * 202.46574 * 22 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6053 1.9815 -0.8418 5 6 3.5418 1.4444 -0.1238 6 1 4.1470 1.8891 0.6524 7 6 4.1433 0.8786 -1.2278 8 7 3.4063 0.3368 -2.1728 9 14 6.0049 0.8815 -1.3816 10 1 6.5975 0.1476 -0.2346 11 1 6.3979 0.2169 -2.6501 12 1 6.4994 2.2818 -1.3819 13 7 1.6512 2.0994 1.2552 14 6 0.2911 2.6467 1.1637 15 1 -0.3174 2.1451 0.4112 16 6 0.2496 4.1811 1.0694 17 6 -0.9653 4.1276 2.0107 18 1 -1.9178 4.0322 1.4893 19 8 -0.9738 5.1620 2.9966 20 6 -0.4082 2.7901 2.5258 21 6 -1.4857 1.7329 2.7758 22 6 0.5614 2.9392 3.6998 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3634 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 1.8934 -0.5138 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 3.8294 -0.0617 -2.9494 29 1 1.7341 1.4653 2.0358 30 1 1.1202 4.6691 1.5074 31 1 0.0130 4.5510 0.0718 32 1 -1.3230 6.0057 2.6786 33 1 -1.0355 0.7408 2.7440 34 1 -1.9352 1.8969 3.7552 35 1 -2.2539 1.8081 2.0063 36 1 1.1746 3.8286 3.5539 37 1 -0.0031 3.0354 4.6273 38 1 1.2036 2.0602 3.7548 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000163364900.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:52:29 Heat of formation + Delta-G solvation = -35.631191 kcal Electronic energy + Delta-G solvation = -16986.572303 eV Core-core repulsion = 14443.458012 eV Total energy + Delta-G solvation = -2543.114291 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.91491 -36.13316 -34.56406 -31.94976 -30.54000 -29.55570 -27.09823 -26.66383 -23.40195 -22.33867 -21.63269 -19.75311 -17.90183 -17.27698 -16.14114 -14.94021 -14.87068 -14.74364 -14.34977 -13.52790 -13.07355 -12.98869 -12.54194 -12.46374 -12.01425 -11.84709 -11.70647 -11.29177 -11.21606 -11.16304 -10.81425 -10.68587 -10.48070 -10.42257 -10.05550 -9.91260 -9.73200 -9.59608 -9.26424 -8.87650 -8.30242 -7.11700 -5.95124 -3.98189 3.36294 3.40039 3.43765 4.36250 4.48035 4.79502 4.88349 5.11471 5.31061 5.35024 5.50293 5.62343 5.71437 5.88177 5.92181 6.04758 6.12573 6.15478 6.22155 6.28623 6.34495 6.37435 6.43012 6.59777 6.78198 6.84170 6.89382 6.99978 7.27499 7.48290 7.79844 7.83332 7.93674 8.35303 8.61352 8.69200 9.09508 9.66861 11.11235 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.035899 B = 0.007489 C = 0.006863 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 779.779579 B = 3738.012856 C = 4078.874432 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.150 4.150 3 C 0.217 3.783 4 H 0.033 0.967 5 C -0.494 4.494 6 H 0.061 0.939 7 C 0.055 3.945 8 N -0.897 5.897 9 Si 0.896 3.104 10 H -0.279 1.279 11 H -0.289 1.289 12 H -0.278 1.278 13 N -0.665 5.665 14 C 0.067 3.933 15 H 0.078 0.922 16 C -0.154 4.154 17 C 0.079 3.921 18 H 0.073 0.927 19 O -0.557 6.557 20 C -0.081 4.081 21 C -0.139 4.139 22 C -0.106 4.106 23 H 0.031 0.969 24 H 0.049 0.951 25 H 0.043 0.957 26 H 0.098 0.902 27 H 0.032 0.968 28 H 0.259 0.741 29 H 0.327 0.673 30 H 0.093 0.907 31 H 0.058 0.942 32 H 0.370 0.630 33 H 0.060 0.940 34 H 0.053 0.947 35 H 0.052 0.948 36 H 0.064 0.936 37 H 0.046 0.954 38 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.415 4.311 7.058 12.532 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.190 4.190 3 C 0.110 3.890 4 H 0.050 0.950 5 C -0.533 4.533 6 H 0.079 0.921 7 C -0.145 4.145 8 N -0.537 5.537 9 Si 0.724 3.276 10 H -0.204 1.204 11 H -0.215 1.215 12 H -0.204 1.204 13 N -0.295 5.295 14 C -0.044 4.044 15 H 0.096 0.904 16 C -0.193 4.193 17 C 0.020 3.980 18 H 0.090 0.910 19 O -0.362 6.362 20 C -0.081 4.081 21 C -0.196 4.196 22 C -0.164 4.164 23 H 0.050 0.950 24 H 0.068 0.932 25 H 0.062 0.938 26 H 0.116 0.884 27 H 0.051 0.949 28 H 0.069 0.931 29 H 0.146 0.854 30 H 0.112 0.888 31 H 0.076 0.924 32 H 0.216 0.784 33 H 0.079 0.921 34 H 0.072 0.928 35 H 0.071 0.929 36 H 0.083 0.917 37 H 0.065 0.935 38 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -8.814 4.324 7.082 12.106 hybrid contribution 0.152 -0.490 -0.667 0.842 sum -8.662 3.834 6.415 11.440 Atomic orbital electron populations 1.22187 0.99760 0.99410 1.00382 1.22286 0.91558 1.02389 1.02757 1.19207 0.95230 0.88302 0.86307 0.94950 1.21150 0.91209 1.35882 1.05023 0.92059 1.24942 0.98116 0.95614 0.95850 1.69864 1.34806 1.39374 1.09685 0.86595 0.85772 0.78146 0.77041 1.20426 1.21524 1.20361 1.60911 1.19719 1.41492 1.07405 1.23023 0.91611 0.94994 0.94813 0.90420 1.23727 0.98498 0.98395 0.98695 1.23450 0.96610 0.88253 0.89666 0.90968 1.86523 1.87347 1.22623 1.39665 1.22287 0.95937 0.92997 0.96904 1.21818 0.97895 0.98788 1.01123 1.21222 0.97756 1.02266 0.95139 0.94973 0.93216 0.93835 0.88386 0.94933 0.93087 0.85443 0.88808 0.92361 0.78413 0.92118 0.92793 0.92895 0.91666 0.93452 0.92513 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.10 8.48 37.16 0.32 -2.78 16 2 C -0.15 -3.50 5.24 -26.73 -0.14 -3.64 16 3 C 0.22 5.36 2.17 -68.86 -0.15 5.21 16 4 H 0.03 0.89 7.84 -51.93 -0.41 0.48 16 5 C -0.49 -13.62 8.84 -34.44 -0.30 -13.93 16 6 H 0.06 1.71 7.81 -52.48 -0.41 1.30 16 7 C 0.06 1.53 5.29 -17.82 -0.09 1.43 16 8 N -0.90 -25.58 11.29 55.43 0.63 -24.95 16 9 Si 0.90 21.61 29.54 -169.99 -5.02 16.59 16 10 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 11 H -0.29 -6.93 7.11 56.52 0.40 -6.52 16 12 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 13 N -0.66 -13.86 5.75 -100.10 -0.58 -14.44 16 14 C 0.07 1.18 2.17 -66.90 -0.14 1.03 16 15 H 0.08 1.43 5.08 -51.93 -0.26 1.16 16 16 C -0.15 -2.53 7.37 -25.92 -0.19 -2.72 16 17 C 0.08 1.11 4.62 -25.92 -0.12 0.99 16 18 H 0.07 0.90 7.96 -51.93 -0.41 0.49 16 19 O -0.56 -7.35 12.77 -35.23 -0.45 -7.80 16 20 C -0.08 -1.21 1.26 -153.70 -0.19 -1.40 16 21 C -0.14 -1.85 8.39 37.16 0.31 -1.53 16 22 C -0.11 -1.62 7.85 37.15 0.29 -1.33 16 23 H 0.03 0.57 8.14 -51.93 -0.42 0.14 16 24 H 0.05 0.86 3.56 -51.93 -0.18 0.68 16 25 H 0.04 0.85 7.90 -51.93 -0.41 0.44 16 26 H 0.10 2.60 5.95 -51.93 -0.31 2.29 16 27 H 0.03 0.74 8.04 -51.93 -0.42 0.32 16 28 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 29 H 0.33 6.60 6.61 -39.29 -0.26 6.34 16 30 H 0.09 1.68 7.66 -51.93 -0.40 1.28 16 31 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 32 H 0.37 3.23 9.12 45.56 0.42 3.64 16 33 H 0.06 0.83 7.09 -51.93 -0.37 0.46 16 34 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.05 0.65 7.94 -51.93 -0.41 0.24 16 36 H 0.06 1.07 7.20 -51.93 -0.37 0.70 16 37 H 0.05 0.67 8.14 -51.92 -0.42 0.24 16 38 H 0.06 0.87 6.71 -51.93 -0.35 0.52 16 LS Contribution 289.70 15.07 4.37 4.37 Total: -1.00 -28.87 289.70 -6.86 -35.73 By element: Atomic # 1 Polarization: 14.55 SS G_CDS: -5.39 Total: 9.17 kcal Atomic # 6 Polarization: -18.25 SS G_CDS: -0.42 Total: -18.67 kcal Atomic # 7 Polarization: -39.44 SS G_CDS: 0.05 Total: -39.39 kcal Atomic # 8 Polarization: -7.35 SS G_CDS: -0.45 Total: -7.80 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.59 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -28.87 -6.86 -35.73 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000163364900.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.103 kcal (2) G-P(sol) polarization free energy of solvation -28.874 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.771 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.860 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.735 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.631 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds