Wall clock time and date at job start Sun Mar 29 2020 21:52:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53006 * 109.46626 * 2 1 4 4 H 1.08992 * 109.47046 * 304.99570 * 3 2 1 5 5 C 1.50699 * 109.46610 * 184.99834 * 3 2 1 6 6 H 1.08004 * 119.99731 * 239.99688 * 5 3 2 7 7 C 1.37871 * 120.00667 * 60.00191 * 5 3 2 8 8 N 1.31516 * 119.99699 * 359.97438 * 7 5 3 9 9 Si 1.86794 * 120.00537 * 179.97438 * 7 5 3 10 10 H 1.48496 * 109.47293 * 59.99662 * 9 7 5 11 11 H 1.48503 * 109.47416 * 179.97438 * 9 7 5 12 12 H 1.48506 * 109.47160 * 299.99720 * 9 7 5 13 13 N 1.46897 * 109.47346 * 65.00011 * 3 2 1 14 14 C 1.46901 * 110.99940 * 275.00087 * 13 3 2 15 15 H 1.08999 * 112.85190 * 23.79954 * 14 13 3 16 16 C 1.53788 * 113.61416 * 252.49757 * 14 13 3 17 17 C 1.53779 * 87.08005 * 220.01720 * 16 14 13 18 18 H 1.09004 * 113.61390 * 270.87960 * 17 16 14 19 19 O 1.42900 * 113.69028 * 139.99360 * 17 16 14 20 20 C 1.53779 * 87.08322 * 25.43238 * 17 16 14 21 21 C 1.53009 * 113.61171 * 220.02354 * 20 17 16 22 22 C 1.52990 * 113.69524 * 89.12676 * 20 17 16 23 23 H 1.09002 * 109.46719 * 180.02562 * 1 2 3 24 24 H 1.08993 * 109.47839 * 299.99931 * 1 2 3 25 25 H 1.09000 * 109.47160 * 60.00369 * 1 2 3 26 26 H 1.08993 * 109.47839 * 240.00069 * 2 1 3 27 27 H 1.09000 * 109.47160 * 119.99631 * 2 1 3 28 28 H 0.96999 * 120.00336 * 180.02562 * 8 7 5 29 29 H 1.00906 * 110.99841 * 38.94767 * 13 3 2 30 30 H 1.08998 * 113.60877 * 334.56800 * 16 14 13 31 31 H 1.08994 * 113.61522 * 105.46587 * 16 14 13 32 32 H 0.96696 * 114.00436 * 82.45900 * 19 17 16 33 33 H 1.09000 * 109.46732 * 157.49592 * 21 20 17 34 34 H 1.09000 * 109.46593 * 277.49319 * 21 20 17 35 35 H 1.08990 * 109.47183 * 37.49374 * 21 20 17 36 36 H 1.09005 * 109.46992 * 322.47026 * 22 20 17 37 37 H 1.09007 * 109.47033 * 82.46419 * 22 20 17 38 38 H 1.09001 * 109.47697 * 202.46574 * 22 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6053 1.9815 -0.8418 5 6 3.5418 1.4444 -0.1238 6 1 4.1470 1.8891 0.6524 7 6 4.1433 0.8786 -1.2278 8 7 3.4063 0.3368 -2.1728 9 14 6.0049 0.8815 -1.3816 10 1 6.5975 0.1476 -0.2346 11 1 6.3979 0.2169 -2.6501 12 1 6.4994 2.2818 -1.3819 13 7 1.6512 2.0994 1.2552 14 6 0.2911 2.6467 1.1637 15 1 -0.3174 2.1451 0.4112 16 6 0.2496 4.1811 1.0694 17 6 -0.9653 4.1276 2.0107 18 1 -1.9178 4.0322 1.4893 19 8 -0.9738 5.1620 2.9966 20 6 -0.4082 2.7901 2.5258 21 6 -1.4857 1.7329 2.7758 22 6 0.5614 2.9392 3.6998 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3634 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 1.8934 -0.5138 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 3.8294 -0.0617 -2.9494 29 1 1.7341 1.4653 2.0358 30 1 1.1202 4.6691 1.5074 31 1 0.0130 4.5510 0.0718 32 1 -1.3230 6.0057 2.6786 33 1 -1.0355 0.7408 2.7440 34 1 -1.9352 1.8969 3.7552 35 1 -2.2539 1.8081 2.0063 36 1 1.1746 3.8286 3.5539 37 1 -0.0031 3.0354 4.6273 38 1 1.2036 2.0602 3.7548 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000163364900.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:52:29 Heat of formation + Delta-G solvation = -56.228034 kcal Electronic energy + Delta-G solvation = -16987.465449 eV Core-core repulsion = 14443.458012 eV Total energy + Delta-G solvation = -2544.007437 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.19606 -37.71418 -35.89807 -33.94662 -31.95950 -30.99568 -28.58543 -28.25270 -25.17016 -23.64693 -23.04799 -21.62613 -19.31666 -18.44329 -18.01356 -16.78410 -16.37225 -15.96465 -15.85919 -15.10540 -14.78218 -14.25734 -14.02338 -13.77080 -13.48484 -13.19595 -13.09117 -12.99237 -12.80940 -12.59282 -12.51677 -12.40762 -12.09241 -11.95744 -11.78912 -11.54392 -11.19906 -11.10977 -10.77444 -10.44913 -10.41626 -8.80464 -8.06923 -6.17666 1.42373 1.43627 1.51375 2.44618 3.19997 3.31440 3.55179 3.61198 4.00157 4.03556 4.16550 4.36933 4.44066 4.56758 4.58227 4.63367 4.70674 4.83377 4.86100 5.00157 5.06121 5.08778 5.14578 5.16749 5.26681 5.30160 5.42640 5.56025 5.58557 5.65500 5.76655 5.92393 6.36314 6.74224 6.92061 6.99410 7.02158 7.52136 8.97271 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.035899 B = 0.007489 C = 0.006863 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 779.779579 B = 3738.012856 C = 4078.874432 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.143 4.143 3 C 0.226 3.774 4 H -0.002 1.002 5 C -0.516 4.516 6 H 0.051 0.949 7 C 0.010 3.990 8 N -0.920 5.920 9 Si 0.956 3.044 10 H -0.272 1.272 11 H -0.284 1.284 12 H -0.276 1.276 13 N -0.669 5.669 14 C 0.055 3.945 15 H 0.074 0.926 16 C -0.160 4.160 17 C 0.099 3.901 18 H 0.098 0.902 19 O -0.567 6.567 20 C -0.077 4.077 21 C -0.136 4.136 22 C -0.103 4.103 23 H 0.050 0.950 24 H 0.071 0.929 25 H 0.036 0.964 26 H 0.064 0.936 27 H 0.030 0.970 28 H 0.260 0.740 29 H 0.329 0.671 30 H 0.074 0.926 31 H 0.057 0.943 32 H 0.391 0.609 33 H 0.055 0.945 34 H 0.068 0.932 35 H 0.064 0.936 36 H 0.046 0.954 37 H 0.061 0.939 38 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.591 4.519 8.102 14.080 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.183 4.183 3 C 0.118 3.882 4 H 0.015 0.985 5 C -0.555 4.555 6 H 0.069 0.931 7 C -0.188 4.188 8 N -0.560 5.560 9 Si 0.782 3.218 10 H -0.198 1.198 11 H -0.210 1.210 12 H -0.202 1.202 13 N -0.299 5.299 14 C -0.056 4.056 15 H 0.092 0.908 16 C -0.199 4.199 17 C 0.039 3.961 18 H 0.115 0.885 19 O -0.374 6.374 20 C -0.078 4.078 21 C -0.194 4.194 22 C -0.160 4.160 23 H 0.069 0.931 24 H 0.089 0.911 25 H 0.056 0.944 26 H 0.083 0.917 27 H 0.049 0.951 28 H 0.069 0.931 29 H 0.149 0.851 30 H 0.092 0.908 31 H 0.076 0.924 32 H 0.240 0.760 33 H 0.074 0.926 34 H 0.087 0.913 35 H 0.083 0.917 36 H 0.065 0.935 37 H 0.080 0.920 38 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -10.006 4.555 8.138 13.678 hybrid contribution 0.517 -0.489 -0.976 1.208 sum -9.489 4.066 7.161 12.564 Atomic orbital electron populations 1.22062 0.96547 1.00868 1.01143 1.22094 0.94448 1.00865 1.00930 1.18902 0.93623 0.88924 0.86782 0.98451 1.21487 0.93008 1.36005 1.05003 0.93118 1.25668 1.02295 0.95286 0.95581 1.69997 1.36316 1.39750 1.09959 0.85646 0.80800 0.78118 0.77214 1.19775 1.20963 1.20170 1.60783 1.22413 1.40941 1.05775 1.23127 0.90063 0.95459 0.96919 0.90844 1.23722 0.99457 0.97215 0.99485 1.23262 0.96229 0.87839 0.88739 0.88481 1.86473 1.87644 1.23738 1.39544 1.22248 0.96106 0.94531 0.94922 1.21801 0.97430 0.97646 1.02473 1.21173 0.97736 1.01117 0.96002 0.93141 0.91053 0.94448 0.91735 0.95077 0.93129 0.85135 0.90782 0.92381 0.75968 0.92570 0.91256 0.91667 0.93456 0.91993 0.93078 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.61 8.48 71.98 0.61 -5.00 16 2 C -0.14 -6.76 5.24 30.60 0.16 -6.60 16 3 C 0.23 11.43 2.17 44.17 0.10 11.53 16 4 H 0.00 -0.14 7.84 -2.39 -0.02 -0.16 16 5 C -0.52 -29.15 8.84 25.60 0.23 -28.93 16 6 H 0.05 2.89 7.81 -2.91 -0.02 2.87 16 7 C 0.01 0.55 5.29 84.65 0.45 1.00 16 8 N -0.92 -53.48 11.29 21.45 0.24 -53.24 16 9 Si 0.96 44.77 29.54 68.60 2.03 46.79 16 10 H -0.27 -12.41 7.11 99.48 0.71 -11.71 16 11 H -0.28 -12.97 7.11 99.48 0.71 -12.27 16 12 H -0.28 -12.77 7.11 99.48 0.71 -12.07 16 13 N -0.67 -28.14 5.75 -470.60 -2.71 -30.85 16 14 C 0.05 1.89 2.17 45.44 0.10 1.99 16 15 H 0.07 2.62 5.08 -2.39 -0.01 2.61 16 16 C -0.16 -5.13 7.37 31.12 0.23 -4.90 16 17 C 0.10 2.49 4.62 31.12 0.14 2.63 16 18 H 0.10 2.03 7.96 -2.39 -0.02 2.01 16 19 O -0.57 -13.32 12.77 -148.98 -1.90 -15.22 16 20 C -0.08 -2.15 1.26 -51.66 -0.06 -2.22 16 21 C -0.14 -3.17 8.39 71.99 0.60 -2.57 16 22 C -0.10 -2.97 7.85 71.98 0.56 -2.41 16 23 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 24 H 0.07 2.36 3.56 -2.39 -0.01 2.35 16 25 H 0.04 1.43 7.90 -2.39 -0.02 1.41 16 26 H 0.06 3.49 5.95 -2.39 -0.01 3.48 16 27 H 0.03 1.43 8.04 -2.39 -0.02 1.41 16 28 H 0.26 14.44 8.31 -92.71 -0.77 13.67 16 29 H 0.33 13.32 6.61 -89.69 -0.59 12.73 16 30 H 0.07 2.66 7.66 -2.39 -0.02 2.65 16 31 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 32 H 0.39 5.61 9.12 -74.06 -0.68 4.93 16 33 H 0.06 1.36 7.09 -2.39 -0.02 1.34 16 34 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 35 H 0.06 1.36 7.94 -2.39 -0.02 1.34 16 36 H 0.05 1.52 7.20 -2.38 -0.02 1.50 16 37 H 0.06 1.60 8.14 -2.38 -0.02 1.58 16 38 H 0.05 1.51 6.71 -2.39 -0.02 1.49 16 Total: -1.00 -62.49 289.70 0.56 -61.93 By element: Atomic # 1 Polarization: 26.27 SS G_CDS: -0.22 Total: 26.06 kcal Atomic # 6 Polarization: -38.59 SS G_CDS: 3.12 Total: -35.47 kcal Atomic # 7 Polarization: -81.62 SS G_CDS: -2.47 Total: -84.09 kcal Atomic # 8 Polarization: -13.32 SS G_CDS: -1.90 Total: -15.22 kcal Atomic # 14 Polarization: 44.77 SS G_CDS: 2.03 Total: 46.79 kcal Total: -62.49 0.56 -61.93 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000163364900.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.705 kcal (2) G-P(sol) polarization free energy of solvation -62.491 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.558 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.933 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.228 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds