Wall clock time and date at job start Sun Mar 29 2020 21:52:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.47052 * 2 1 4 4 H 1.09002 * 109.46810 * 305.62333 * 3 2 1 5 5 C 1.50699 * 109.47087 * 185.61907 * 3 2 1 6 6 H 1.07997 * 120.00222 * 240.00113 * 5 3 2 7 7 C 1.37874 * 119.99971 * 60.00365 * 5 3 2 8 8 N 1.31518 * 120.00240 * 359.97438 * 7 5 3 9 9 Si 1.86804 * 120.00109 * 179.97438 * 7 5 3 10 10 H 1.48503 * 109.46927 * 90.00076 * 9 7 5 11 11 H 1.48505 * 109.47088 * 209.99950 * 9 7 5 12 12 H 1.48500 * 109.46924 * 329.99907 * 9 7 5 13 13 N 1.46900 * 109.46893 * 65.62172 * 3 2 1 14 14 C 1.46900 * 110.99855 * 204.00460 * 13 3 2 15 15 H 1.08996 * 112.84724 * 335.74831 * 14 13 3 16 16 C 1.53783 * 113.61710 * 107.05743 * 14 13 3 17 17 C 1.53778 * 87.08080 * 139.98153 * 16 14 13 18 18 H 1.09010 * 113.68882 * 220.01063 * 17 16 14 19 19 O 1.42893 * 113.61927 * 89.11788 * 17 16 14 20 20 C 1.53780 * 113.61302 * 204.55641 * 14 13 3 21 21 C 1.52998 * 113.61399 * 334.56373 * 20 14 13 22 22 C 1.52998 * 113.61601 * 105.38458 * 20 14 13 23 23 H 1.08992 * 109.47255 * 294.27042 * 1 2 3 24 24 H 1.09002 * 109.46982 * 54.27635 * 1 2 3 25 25 H 1.09003 * 109.46737 * 174.27263 * 1 2 3 26 26 H 1.09000 * 109.47190 * 240.00232 * 2 1 3 27 27 H 1.09000 * 109.47345 * 120.00161 * 2 1 3 28 28 H 0.96992 * 120.00377 * 179.97438 * 8 7 5 29 29 H 1.00904 * 111.00074 * 327.95798 * 13 3 2 30 30 H 1.08993 * 113.61157 * 254.53138 * 16 14 13 31 31 H 1.09001 * 113.61231 * 25.43094 * 16 14 13 32 32 H 0.96699 * 113.99959 * 82.49825 * 19 17 16 33 33 H 1.09004 * 109.47370 * 60.00257 * 21 20 14 34 34 H 1.09005 * 109.47356 * 180.02562 * 21 20 14 35 35 H 1.09005 * 109.47477 * 299.99771 * 21 20 14 36 36 H 1.09004 * 109.47314 * 59.99998 * 22 20 14 37 37 H 1.09006 * 109.47206 * 179.97438 * 22 20 14 38 38 H 1.08998 * 109.47344 * 299.99659 * 22 20 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5967 1.9846 -0.8354 5 6 3.5405 1.4448 -0.1391 6 1 4.1537 1.8866 0.6324 7 6 4.1306 0.8830 -1.2514 8 7 3.3840 0.3446 -2.1907 9 14 5.9906 0.8864 -1.4242 10 1 6.5468 -0.3473 -0.8127 11 1 6.3540 0.9328 -2.8634 12 1 6.5497 2.0765 -0.7339 13 7 1.6642 2.0947 1.2615 14 6 1.6067 3.5540 1.1030 15 1 2.2254 3.9152 0.2816 16 6 0.1755 4.1166 1.0922 17 6 0.7117 5.2829 1.9388 18 1 0.0327 5.5971 2.7317 19 8 1.2008 6.3774 1.1611 20 6 1.8158 4.3251 2.4169 21 6 1.4352 3.5250 3.6643 22 6 3.1930 4.9818 2.5297 23 1 -0.3633 0.4224 0.9368 24 1 -0.3633 0.6000 -0.8343 25 1 -0.3633 -1.0226 -0.1026 26 1 1.8934 -0.5138 -0.8900 27 1 1.8934 -0.5138 0.8900 28 1 3.7990 -0.0503 -2.9733 29 1 0.7880 1.7338 1.6082 30 1 -0.1680 4.4172 0.1025 31 1 -0.5441 3.4895 1.6187 32 1 0.5110 6.9833 0.8575 33 1 2.0437 2.6222 3.7166 34 1 1.6086 4.1325 4.5526 35 1 0.3815 3.2505 3.6125 36 1 3.3257 5.6904 1.7121 37 1 3.2680 5.5077 3.4815 38 1 3.9664 4.2157 2.4756 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000163365078.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:52:31 Heat of formation + Delta-G solvation = -39.694194 kcal Electronic energy + Delta-G solvation = -16944.131291 eV Core-core repulsion = 14400.840815 eV Total energy + Delta-G solvation = -2543.290476 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.79467 -35.92898 -34.56787 -31.91830 -30.59032 -29.38958 -26.93440 -26.34270 -23.41381 -22.33147 -21.94926 -19.52924 -17.98557 -16.81905 -16.12258 -14.99858 -14.84295 -14.54700 -14.01922 -13.56167 -13.29799 -12.78395 -12.61710 -12.05006 -11.86138 -11.84400 -11.75136 -11.65448 -11.13411 -11.10403 -10.84859 -10.56987 -10.50863 -10.35157 -9.91747 -9.88697 -9.61967 -9.51232 -9.04073 -8.96142 -8.29052 -7.09782 -5.91044 -3.94611 3.36411 3.42567 3.47432 4.27266 4.50045 4.92208 5.05491 5.14813 5.29786 5.38061 5.67657 5.76472 5.85979 5.94788 6.06442 6.12463 6.17898 6.19482 6.25422 6.37378 6.42918 6.47655 6.64273 6.71950 6.84765 6.89661 7.01434 7.13896 7.24402 7.58692 7.83190 7.84565 7.99644 8.39640 8.45936 8.84763 9.14092 9.70288 11.14263 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.024137 B = 0.009196 C = 0.007716 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1159.771879 B = 3044.231159 C = 3628.031055 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.126 4.126 3 C 0.219 3.781 4 H 0.000 1.000 5 C -0.489 4.489 6 H 0.061 0.939 7 C 0.054 3.946 8 N -0.898 5.898 9 Si 0.893 3.107 10 H -0.282 1.282 11 H -0.289 1.289 12 H -0.275 1.275 13 N -0.673 5.673 14 C 0.103 3.897 15 H 0.100 0.900 16 C -0.204 4.204 17 C 0.083 3.917 18 H 0.058 0.942 19 O -0.546 6.546 20 C -0.070 4.070 21 C -0.116 4.116 22 C -0.126 4.126 23 H 0.034 0.966 24 H 0.041 0.959 25 H 0.036 0.964 26 H 0.099 0.901 27 H 0.040 0.960 28 H 0.258 0.742 29 H 0.317 0.683 30 H 0.064 0.936 31 H 0.081 0.919 32 H 0.372 0.628 33 H 0.078 0.922 34 H 0.043 0.957 35 H 0.047 0.953 36 H 0.062 0.938 37 H 0.040 0.960 38 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.750 7.069 7.477 12.306 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.164 4.164 3 C 0.112 3.888 4 H 0.018 0.982 5 C -0.528 4.528 6 H 0.079 0.921 7 C -0.146 4.146 8 N -0.538 5.538 9 Si 0.721 3.279 10 H -0.209 1.209 11 H -0.215 1.215 12 H -0.200 1.200 13 N -0.302 5.302 14 C -0.009 4.009 15 H 0.118 0.882 16 C -0.244 4.244 17 C 0.023 3.977 18 H 0.076 0.924 19 O -0.350 6.350 20 C -0.071 4.071 21 C -0.173 4.173 22 C -0.183 4.183 23 H 0.053 0.947 24 H 0.060 0.940 25 H 0.055 0.945 26 H 0.117 0.883 27 H 0.059 0.941 28 H 0.068 0.932 29 H 0.136 0.864 30 H 0.083 0.917 31 H 0.099 0.901 32 H 0.218 0.782 33 H 0.097 0.903 34 H 0.063 0.937 35 H 0.066 0.934 36 H 0.081 0.919 37 H 0.059 0.941 38 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -5.490 6.649 7.650 11.527 hybrid contribution -0.504 0.310 -0.863 1.047 sum -5.995 6.959 6.787 11.420 Atomic orbital electron populations 1.21872 0.99722 0.99590 0.99439 1.21765 0.91124 1.00530 1.02996 1.19163 0.95359 0.89827 0.84486 0.98214 1.21225 0.91331 1.36085 1.04113 0.92080 1.24953 0.97958 0.95782 0.95904 1.69872 1.34574 1.39751 1.09603 0.86577 0.86035 0.78365 0.76893 1.20854 1.21513 1.19957 1.60541 1.34808 1.02020 1.32826 1.22855 0.92914 0.89111 0.96032 0.88183 1.24374 1.00100 0.99550 1.00384 1.22787 0.96499 0.85870 0.92497 0.92436 1.86496 1.37189 1.38653 1.72654 1.22119 0.94311 0.94036 0.96663 1.21407 1.01000 1.00340 0.94597 1.21508 0.95964 1.00182 1.00681 0.94722 0.93951 0.94492 0.88322 0.94121 0.93198 0.86436 0.91704 0.90100 0.78208 0.90288 0.93747 0.93436 0.91946 0.94051 0.92182 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.88 9.64 37.16 0.36 -2.53 16 2 C -0.13 -2.97 5.37 -26.73 -0.14 -3.11 16 3 C 0.22 5.44 1.88 -68.86 -0.13 5.31 16 4 H 0.00 0.01 7.87 -51.93 -0.41 -0.40 16 5 C -0.49 -13.57 8.61 -34.44 -0.30 -13.87 16 6 H 0.06 1.74 7.81 -52.49 -0.41 1.33 16 7 C 0.05 1.51 5.29 -17.82 -0.09 1.42 16 8 N -0.90 -25.79 11.29 55.43 0.63 -25.17 16 9 Si 0.89 21.86 29.54 -169.99 -5.02 16.84 16 10 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 11 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 12 H -0.27 -6.70 7.11 56.52 0.40 -6.30 16 13 N -0.67 -14.04 5.34 -100.10 -0.53 -14.58 16 14 C 0.10 1.97 3.28 -66.90 -0.22 1.75 16 15 H 0.10 2.28 7.75 -51.93 -0.40 1.87 16 16 C -0.20 -3.20 7.18 -25.92 -0.19 -3.39 16 17 C 0.08 1.20 4.69 -25.92 -0.12 1.07 16 18 H 0.06 0.72 8.10 -51.92 -0.42 0.30 16 19 O -0.55 -7.78 12.13 -35.23 -0.43 -8.21 16 20 C -0.07 -1.14 1.35 -153.70 -0.21 -1.35 16 21 C -0.12 -1.69 8.42 37.16 0.31 -1.37 16 22 C -0.13 -2.12 9.04 37.16 0.34 -1.78 16 23 H 0.03 0.60 6.65 -51.93 -0.35 0.25 16 24 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 25 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 26 H 0.10 2.63 5.94 -51.93 -0.31 2.32 16 27 H 0.04 0.96 8.14 -51.93 -0.42 0.53 16 28 H 0.26 7.12 8.31 -40.82 -0.34 6.79 16 29 H 0.32 6.05 5.98 -39.29 -0.24 5.82 16 30 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 31 H 0.08 1.17 7.34 -51.93 -0.38 0.79 16 32 H 0.37 3.50 9.12 45.56 0.42 3.92 16 33 H 0.08 1.27 7.77 -51.93 -0.40 0.87 16 34 H 0.04 0.57 8.14 -51.93 -0.42 0.14 16 35 H 0.05 0.63 7.34 -51.93 -0.38 0.25 16 36 H 0.06 1.10 6.97 -51.93 -0.36 0.73 16 37 H 0.04 0.61 8.14 -51.93 -0.42 0.18 16 38 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 LS Contribution 298.31 15.07 4.50 4.50 Total: -1.00 -29.27 298.31 -6.99 -36.26 By element: Atomic # 1 Polarization: 13.94 SS G_CDS: -5.74 Total: 8.20 kcal Atomic # 6 Polarization: -17.45 SS G_CDS: -0.39 Total: -17.84 kcal Atomic # 7 Polarization: -39.83 SS G_CDS: 0.09 Total: -39.74 kcal Atomic # 8 Polarization: -7.78 SS G_CDS: -0.43 Total: -8.21 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.84 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -29.27 -6.99 -36.26 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000163365078.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.438 kcal (2) G-P(sol) polarization free energy of solvation -29.267 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.705 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.989 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.256 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.694 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds