Wall clock time and date at job start Sun Mar 29 2020 21:52:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.47052 * 2 1 4 4 H 1.09002 * 109.46810 * 305.62333 * 3 2 1 5 5 C 1.50699 * 109.47087 * 185.61907 * 3 2 1 6 6 H 1.07997 * 120.00222 * 240.00113 * 5 3 2 7 7 C 1.37874 * 119.99971 * 60.00365 * 5 3 2 8 8 N 1.31518 * 120.00240 * 359.97438 * 7 5 3 9 9 Si 1.86804 * 120.00109 * 179.97438 * 7 5 3 10 10 H 1.48503 * 109.46927 * 90.00076 * 9 7 5 11 11 H 1.48505 * 109.47088 * 209.99950 * 9 7 5 12 12 H 1.48500 * 109.46924 * 329.99907 * 9 7 5 13 13 N 1.46900 * 109.46893 * 65.62172 * 3 2 1 14 14 C 1.46900 * 110.99855 * 204.00460 * 13 3 2 15 15 H 1.08996 * 112.84724 * 335.74831 * 14 13 3 16 16 C 1.53783 * 113.61710 * 107.05743 * 14 13 3 17 17 C 1.53778 * 87.08080 * 139.98153 * 16 14 13 18 18 H 1.09010 * 113.68882 * 220.01063 * 17 16 14 19 19 O 1.42893 * 113.61927 * 89.11788 * 17 16 14 20 20 C 1.53780 * 113.61302 * 204.55641 * 14 13 3 21 21 C 1.52998 * 113.61399 * 334.56373 * 20 14 13 22 22 C 1.52998 * 113.61601 * 105.38458 * 20 14 13 23 23 H 1.08992 * 109.47255 * 294.27042 * 1 2 3 24 24 H 1.09002 * 109.46982 * 54.27635 * 1 2 3 25 25 H 1.09003 * 109.46737 * 174.27263 * 1 2 3 26 26 H 1.09000 * 109.47190 * 240.00232 * 2 1 3 27 27 H 1.09000 * 109.47345 * 120.00161 * 2 1 3 28 28 H 0.96992 * 120.00377 * 179.97438 * 8 7 5 29 29 H 1.00904 * 111.00074 * 327.95798 * 13 3 2 30 30 H 1.08993 * 113.61157 * 254.53138 * 16 14 13 31 31 H 1.09001 * 113.61231 * 25.43094 * 16 14 13 32 32 H 0.96699 * 113.99959 * 82.49825 * 19 17 16 33 33 H 1.09004 * 109.47370 * 60.00257 * 21 20 14 34 34 H 1.09005 * 109.47356 * 180.02562 * 21 20 14 35 35 H 1.09005 * 109.47477 * 299.99771 * 21 20 14 36 36 H 1.09004 * 109.47314 * 59.99998 * 22 20 14 37 37 H 1.09006 * 109.47206 * 179.97438 * 22 20 14 38 38 H 1.08998 * 109.47344 * 299.99659 * 22 20 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5967 1.9846 -0.8354 5 6 3.5405 1.4448 -0.1391 6 1 4.1537 1.8866 0.6324 7 6 4.1306 0.8830 -1.2514 8 7 3.3840 0.3446 -2.1907 9 14 5.9906 0.8864 -1.4242 10 1 6.5468 -0.3473 -0.8127 11 1 6.3540 0.9328 -2.8634 12 1 6.5497 2.0765 -0.7339 13 7 1.6642 2.0947 1.2615 14 6 1.6067 3.5540 1.1030 15 1 2.2254 3.9152 0.2816 16 6 0.1755 4.1166 1.0922 17 6 0.7117 5.2829 1.9388 18 1 0.0327 5.5971 2.7317 19 8 1.2008 6.3774 1.1611 20 6 1.8158 4.3251 2.4169 21 6 1.4352 3.5250 3.6643 22 6 3.1930 4.9818 2.5297 23 1 -0.3633 0.4224 0.9368 24 1 -0.3633 0.6000 -0.8343 25 1 -0.3633 -1.0226 -0.1026 26 1 1.8934 -0.5138 -0.8900 27 1 1.8934 -0.5138 0.8900 28 1 3.7990 -0.0503 -2.9733 29 1 0.7880 1.7338 1.6082 30 1 -0.1680 4.4172 0.1025 31 1 -0.5441 3.4895 1.6187 32 1 0.5110 6.9833 0.8575 33 1 2.0437 2.6222 3.7166 34 1 1.6086 4.1325 4.5526 35 1 0.3815 3.2505 3.6125 36 1 3.3257 5.6904 1.7121 37 1 3.2680 5.5077 3.4815 38 1 3.9664 4.2157 2.4756 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000163365078.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:52:31 Heat of formation + Delta-G solvation = -60.470232 kcal Electronic energy + Delta-G solvation = -16945.032208 eV Core-core repulsion = 14400.840815 eV Total energy + Delta-G solvation = -2544.191393 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.11386 -37.60724 -35.93238 -33.96306 -32.14876 -30.81400 -28.40570 -28.08528 -25.14580 -23.78676 -23.37462 -21.44959 -19.27391 -18.36385 -17.93963 -16.84827 -16.20452 -16.04318 -15.62590 -15.18310 -14.72739 -14.47685 -14.19304 -13.61709 -13.34195 -13.22899 -13.09889 -12.98155 -12.86726 -12.76779 -12.53449 -12.47758 -12.00969 -11.88146 -11.81512 -11.51056 -11.40229 -10.97460 -10.75097 -10.44525 -10.37655 -8.83256 -8.05940 -6.17560 1.38715 1.39097 1.49843 2.43152 3.18052 3.19942 3.61174 3.72893 3.83423 4.03286 4.33800 4.46778 4.51562 4.58548 4.60392 4.68167 4.73783 4.84742 4.92016 4.98027 5.09022 5.10974 5.17532 5.22097 5.28434 5.38654 5.41538 5.59014 5.62585 5.71098 5.78590 5.94241 6.40188 6.57564 6.97720 6.98975 7.10646 7.51619 8.96613 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.024137 B = 0.009196 C = 0.007716 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1159.771879 B = 3044.231159 C = 3628.031055 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.121 4.121 3 C 0.228 3.772 4 H -0.039 1.039 5 C -0.506 4.506 6 H 0.045 0.955 7 C 0.009 3.991 8 N -0.920 5.920 9 Si 0.951 3.049 10 H -0.274 1.274 11 H -0.283 1.283 12 H -0.275 1.275 13 N -0.669 5.669 14 C 0.083 3.917 15 H 0.051 0.949 16 C -0.193 4.193 17 C 0.100 3.900 18 H 0.096 0.904 19 O -0.566 6.566 20 C -0.072 4.072 21 C -0.111 4.111 22 C -0.123 4.123 23 H 0.060 0.940 24 H 0.034 0.966 25 H 0.056 0.944 26 H 0.065 0.935 27 H 0.037 0.963 28 H 0.259 0.741 29 H 0.330 0.670 30 H 0.058 0.942 31 H 0.102 0.898 32 H 0.394 0.606 33 H 0.057 0.943 34 H 0.067 0.933 35 H 0.065 0.935 36 H 0.046 0.954 37 H 0.066 0.934 38 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.024 7.753 9.208 14.467 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.160 4.160 3 C 0.119 3.881 4 H -0.021 1.021 5 C -0.545 4.545 6 H 0.063 0.937 7 C -0.189 4.189 8 N -0.561 5.561 9 Si 0.777 3.223 10 H -0.200 1.200 11 H -0.209 1.209 12 H -0.200 1.200 13 N -0.299 5.299 14 C -0.029 4.029 15 H 0.069 0.931 16 C -0.233 4.233 17 C 0.040 3.960 18 H 0.113 0.887 19 O -0.374 6.374 20 C -0.073 4.073 21 C -0.168 4.168 22 C -0.181 4.181 23 H 0.079 0.921 24 H 0.053 0.947 25 H 0.075 0.925 26 H 0.083 0.917 27 H 0.056 0.944 28 H 0.068 0.932 29 H 0.149 0.851 30 H 0.076 0.924 31 H 0.120 0.880 32 H 0.244 0.756 33 H 0.076 0.924 34 H 0.086 0.914 35 H 0.084 0.916 36 H 0.066 0.934 37 H 0.085 0.915 38 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -6.786 7.353 9.388 13.721 hybrid contribution -0.090 0.147 -1.426 1.436 sum -6.876 7.500 7.962 12.920 Atomic orbital electron populations 1.21731 0.96164 1.01043 1.00508 1.21582 0.94324 0.98949 1.01099 1.18882 0.93656 0.90559 0.84956 1.02124 1.21468 0.93073 1.36048 1.03942 0.93690 1.25654 1.02053 0.95541 0.95674 1.69998 1.36039 1.40148 1.09870 0.85662 0.81204 0.78405 0.76982 1.19997 1.20899 1.20025 1.60455 1.35719 1.03164 1.30545 1.22847 0.95246 0.88078 0.96690 0.93114 1.24315 0.97831 1.00227 1.00887 1.22662 0.95324 0.85322 0.92663 0.88672 1.86455 1.38957 1.39055 1.72907 1.22193 0.94900 0.94351 0.95874 1.21368 1.01641 0.99469 0.94322 1.21465 0.95866 0.99318 1.01428 0.92112 0.94716 0.92471 0.91659 0.94443 0.93168 0.85091 0.92359 0.87955 0.75644 0.92419 0.91375 0.91609 0.93447 0.91504 0.94750 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.13 9.64 71.98 0.69 -4.44 16 2 C -0.12 -5.78 5.37 30.60 0.16 -5.62 16 3 C 0.23 11.71 1.88 44.17 0.08 11.80 16 4 H -0.04 -2.25 7.87 -2.39 -0.02 -2.27 16 5 C -0.51 -29.25 8.61 25.60 0.22 -29.03 16 6 H 0.04 2.67 7.81 -2.91 -0.02 2.65 16 7 C 0.01 0.49 5.29 84.65 0.45 0.94 16 8 N -0.92 -54.40 11.29 21.45 0.24 -54.16 16 9 Si 0.95 45.88 29.54 68.60 2.03 47.91 16 10 H -0.27 -12.83 7.11 99.48 0.71 -12.12 16 11 H -0.28 -13.33 7.11 99.48 0.71 -12.62 16 12 H -0.28 -13.18 7.11 99.48 0.71 -12.48 16 13 N -0.67 -28.13 5.34 -470.61 -2.51 -30.64 16 14 C 0.08 3.20 3.28 45.44 0.15 3.35 16 15 H 0.05 2.45 7.75 -2.39 -0.02 2.43 16 16 C -0.19 -5.68 7.18 31.12 0.22 -5.46 16 17 C 0.10 2.57 4.69 31.12 0.15 2.72 16 18 H 0.10 1.85 8.10 -2.38 -0.02 1.83 16 19 O -0.57 -15.06 12.13 -148.98 -1.81 -16.86 16 20 C -0.07 -2.24 1.35 -51.66 -0.07 -2.31 16 21 C -0.11 -2.89 8.42 71.98 0.61 -2.29 16 22 C -0.12 -4.10 9.04 71.98 0.65 -3.45 16 23 H 0.06 1.94 6.65 -2.39 -0.02 1.93 16 24 H 0.03 1.33 8.14 -2.39 -0.02 1.31 16 25 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 26 H 0.06 3.57 5.94 -2.39 -0.01 3.56 16 27 H 0.04 1.77 8.14 -2.39 -0.02 1.75 16 28 H 0.26 14.62 8.31 -92.71 -0.77 13.85 16 29 H 0.33 12.14 5.98 -89.69 -0.54 11.60 16 30 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 31 H 0.10 2.59 7.34 -2.39 -0.02 2.57 16 32 H 0.39 6.40 9.12 -74.06 -0.68 5.73 16 33 H 0.06 1.76 7.77 -2.39 -0.02 1.74 16 34 H 0.07 1.47 8.14 -2.38 -0.02 1.45 16 35 H 0.06 1.47 7.34 -2.38 -0.02 1.45 16 36 H 0.05 1.68 6.97 -2.39 -0.02 1.66 16 37 H 0.07 1.84 8.14 -2.38 -0.02 1.82 16 38 H 0.03 1.27 8.14 -2.39 -0.02 1.26 16 Total: -1.00 -65.89 298.31 1.09 -64.80 By element: Atomic # 1 Polarization: 22.91 SS G_CDS: -0.18 Total: 22.74 kcal Atomic # 6 Polarization: -37.10 SS G_CDS: 3.32 Total: -33.79 kcal Atomic # 7 Polarization: -82.53 SS G_CDS: -2.27 Total: -84.80 kcal Atomic # 8 Polarization: -15.06 SS G_CDS: -1.81 Total: -16.86 kcal Atomic # 14 Polarization: 45.88 SS G_CDS: 2.03 Total: 47.91 kcal Total: -65.89 1.09 -64.80 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000163365078.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.334 kcal (2) G-P(sol) polarization free energy of solvation -65.892 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.557 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.087 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.805 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.470 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds