Wall clock time and date at job start Sun Mar 29 2020 21:48:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52996 * 109.47160 * 2 1 4 4 H 1.08996 * 109.47734 * 57.21313 * 3 2 1 5 5 C 1.50705 * 109.47055 * 177.21356 * 3 2 1 6 6 H 1.08001 * 119.99741 * 119.99621 * 5 3 2 7 7 C 1.37878 * 119.99956 * 299.72436 * 5 3 2 8 8 N 1.31512 * 119.99955 * 180.02562 * 7 5 3 9 9 Si 1.86798 * 119.99833 * 359.97438 * 7 5 3 10 10 H 1.48500 * 109.47310 * 90.00480 * 9 7 5 11 11 H 1.48500 * 109.46945 * 210.00315 * 9 7 5 12 12 H 1.48494 * 109.47405 * 329.99995 * 9 7 5 13 13 N 1.46897 * 109.46768 * 297.21135 * 3 2 1 14 14 C 1.44020 * 110.99907 * 174.34108 * 13 3 2 15 15 C 1.54617 * 112.48363 * 217.17367 * 14 13 3 16 16 C 1.54575 * 110.90660 * 319.61375 * 15 14 13 17 17 O 1.39912 * 113.22142 * 319.28056 * 16 15 14 18 18 C 1.44521 * 112.80552 * 94.89809 * 17 16 15 19 19 H 1.08999 * 109.10932 * 40.92134 * 18 17 16 20 20 C 1.52998 * 109.11342 * 159.98055 * 18 17 16 21 21 C 1.46261 * 111.31152 * 280.45302 * 18 17 16 22 22 H 1.08994 * 109.46968 * 185.08099 * 1 2 3 23 23 H 1.09001 * 109.46941 * 305.08157 * 1 2 3 24 24 H 1.08999 * 109.46784 * 65.07999 * 1 2 3 25 25 H 1.09000 * 109.47142 * 239.99371 * 2 1 3 26 26 H 1.09009 * 109.46590 * 119.99644 * 2 1 3 27 27 H 0.97000 * 120.00327 * 179.97438 * 8 7 5 28 28 H 1.09002 * 108.87985 * 337.95052 * 14 13 3 29 29 H 1.09002 * 108.87565 * 96.40396 * 14 13 3 30 30 H 1.08999 * 109.19317 * 199.24396 * 15 14 13 31 31 H 1.08997 * 109.14812 * 79.95602 * 15 14 13 32 32 H 1.09005 * 108.72791 * 198.32062 * 16 15 14 33 33 H 1.08996 * 108.73820 * 80.25043 * 16 15 14 34 34 H 1.08993 * 109.47160 * 181.81581 * 20 18 17 35 35 H 1.09001 * 109.47085 * 301.81537 * 20 18 17 36 36 H 1.09002 * 109.46765 * 61.80809 * 20 18 17 37 37 H 1.09003 * 108.91446 * 298.76079 * 21 18 17 38 38 H 1.08991 * 108.91693 * 180.21666 * 21 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6366 1.9706 0.8639 5 6 3.5455 1.4430 0.0691 6 1 4.1222 1.8976 -0.7229 7 6 4.1864 0.8681 1.1460 8 7 5.5001 0.8690 1.2065 9 14 3.1886 0.0891 2.5197 10 1 2.9551 -1.3444 2.2104 11 1 3.9335 0.2045 3.7992 12 1 1.8842 0.7881 2.6417 13 7 1.6061 2.1151 -1.2317 14 6 1.9553 3.5122 -1.2072 15 6 0.8733 4.4035 -1.8594 16 6 0.3044 3.7378 -3.1332 17 8 1.2840 3.1169 -3.9157 18 6 1.4162 1.7059 -3.6321 19 1 0.4243 1.2748 -3.4964 20 6 2.1016 1.0192 -4.8151 21 6 2.2067 1.4785 -2.4228 22 1 -0.3633 -1.0236 0.0910 23 1 -0.3633 0.5907 0.8410 24 1 -0.3633 0.4330 -0.9320 25 1 1.8934 -0.5139 -0.8899 26 1 1.8933 -0.5138 0.8901 27 1 5.9511 0.4648 1.9643 28 1 2.0917 3.8236 -0.1716 29 1 2.8952 3.6502 -1.7418 30 1 1.3128 5.3653 -2.1236 31 1 0.0643 4.5632 -1.1467 32 1 -0.1927 4.4995 -3.7340 33 1 -0.4333 2.9915 -2.8386 34 1 2.1753 -0.0508 -4.6213 35 1 1.5170 1.1851 -5.7200 36 1 3.1008 1.4344 -4.9470 37 1 3.2073 1.8839 -2.5733 38 1 2.2848 0.4055 -2.2482 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000217571123.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:48:45 Heat of formation + Delta-G solvation = -39.191714 kcal Electronic energy + Delta-G solvation = -17427.001932 eV Core-core repulsion = 14883.733245 eV Total energy + Delta-G solvation = -2543.268687 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.38505 -36.63024 -33.32641 -32.94923 -31.87828 -29.52168 -27.17023 -26.02159 -24.18613 -22.53454 -20.96507 -20.24392 -19.15518 -16.88480 -16.40702 -15.57698 -14.95016 -14.84150 -14.36899 -13.75763 -13.33913 -12.78550 -12.72759 -12.41837 -12.21150 -12.13465 -11.83884 -11.70040 -11.45654 -11.18507 -11.02202 -10.77608 -10.40270 -10.23361 -10.04888 -9.84988 -9.64563 -9.54283 -9.20896 -9.05739 -8.59381 -7.27640 -6.14036 -4.15148 3.22856 3.34302 3.36028 4.18284 4.34677 4.75577 5.16689 5.37663 5.43187 5.55828 5.63335 5.73707 5.79853 5.90295 5.93415 5.97401 6.04931 6.10767 6.18938 6.29779 6.36504 6.37366 6.48783 6.57136 6.64395 6.70887 6.76364 6.81355 6.89913 7.06756 7.22493 7.53596 7.72769 8.09034 8.16791 8.43231 8.88925 9.49197 10.98855 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.030170 B = 0.009469 C = 0.009366 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 927.838409 B = 2956.156675 C = 2988.888220 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.123 4.123 3 C 0.182 3.818 4 H 0.039 0.961 5 C -0.545 4.545 6 H 0.075 0.925 7 C 0.074 3.926 8 N -0.897 5.897 9 Si 0.886 3.114 10 H -0.278 1.278 11 H -0.298 1.298 12 H -0.264 1.264 13 N -0.520 5.520 14 C 0.067 3.933 15 C -0.141 4.141 16 C 0.075 3.925 17 O -0.378 6.378 18 C 0.093 3.907 19 H 0.058 0.942 20 C -0.146 4.146 21 C 0.030 3.970 22 H 0.033 0.967 23 H 0.043 0.957 24 H 0.058 0.942 25 H 0.059 0.941 26 H 0.047 0.953 27 H 0.264 0.736 28 H 0.062 0.938 29 H 0.038 0.962 30 H 0.057 0.943 31 H 0.063 0.937 32 H 0.063 0.937 33 H 0.050 0.950 34 H 0.068 0.932 35 H 0.057 0.943 36 H 0.061 0.939 37 H 0.046 0.954 38 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.076 1.302 -6.859 12.258 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.161 4.161 3 C 0.075 3.925 4 H 0.057 0.943 5 C -0.584 4.584 6 H 0.093 0.907 7 C -0.129 4.129 8 N -0.534 5.534 9 Si 0.717 3.283 10 H -0.205 1.205 11 H -0.226 1.226 12 H -0.189 1.189 13 N -0.243 5.243 14 C -0.062 4.062 15 C -0.180 4.180 16 C -0.003 4.003 17 O -0.297 6.297 18 C 0.035 3.965 19 H 0.076 0.924 20 C -0.204 4.204 21 C -0.098 4.098 22 H 0.052 0.948 23 H 0.062 0.938 24 H 0.077 0.923 25 H 0.078 0.922 26 H 0.065 0.935 27 H 0.073 0.927 28 H 0.081 0.919 29 H 0.056 0.944 30 H 0.076 0.924 31 H 0.081 0.919 32 H 0.081 0.919 33 H 0.068 0.932 34 H 0.087 0.913 35 H 0.076 0.924 36 H 0.081 0.919 37 H 0.065 0.935 38 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -10.325 1.304 -6.904 12.489 hybrid contribution 0.486 -0.516 1.226 1.416 sum -9.840 0.788 -5.678 11.388 Atomic orbital electron populations 1.21704 0.97320 0.99181 1.01621 1.21973 0.94084 0.99389 1.00621 1.19849 0.94352 0.90381 0.87914 0.94296 1.21668 0.90256 1.38526 1.07915 0.90651 1.24995 0.94693 0.95376 0.97827 1.69914 1.07695 1.44821 1.31009 0.86864 0.80358 0.79869 0.81239 1.20518 1.22558 1.18915 1.61803 1.57564 1.01977 1.02940 1.21616 0.95558 0.89015 1.00038 1.22731 0.99559 0.98486 0.97188 1.22017 0.90226 0.96332 0.91677 1.87676 1.59505 1.22155 1.60322 1.21273 0.99152 0.81320 0.94728 0.92418 1.21800 1.01283 0.99979 0.97319 1.21550 0.96939 1.01105 0.90247 0.94826 0.93808 0.92325 0.92203 0.93473 0.92652 0.91942 0.94402 0.92419 0.91868 0.91904 0.93180 0.91282 0.92358 0.91942 0.93542 0.90023 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.50 9.71 37.16 0.36 -2.14 16 2 C -0.12 -2.60 4.80 -26.73 -0.13 -2.73 16 3 C 0.18 4.18 1.16 -68.87 -0.08 4.10 16 4 H 0.04 0.95 6.92 -51.93 -0.36 0.59 16 5 C -0.55 -14.76 7.95 -34.44 -0.27 -15.03 16 6 H 0.08 2.25 6.72 -52.49 -0.35 1.90 16 7 C 0.07 2.09 5.45 -17.82 -0.10 1.99 16 8 N -0.90 -27.06 13.96 55.43 0.77 -26.28 16 9 Si 0.89 21.66 24.41 -169.99 -4.15 17.52 16 10 H -0.28 -6.64 6.84 56.52 0.39 -6.25 16 11 H -0.30 -7.35 7.11 56.52 0.40 -6.95 16 12 H -0.26 -6.20 6.53 56.52 0.37 -5.83 16 13 N -0.52 -10.46 3.69 -232.55 -0.86 -11.32 16 14 C 0.07 1.33 4.54 -4.51 -0.02 1.31 16 15 C -0.14 -2.23 6.52 -25.05 -0.16 -2.39 16 16 C 0.08 1.14 6.20 37.99 0.24 1.38 16 17 O -0.38 -6.44 10.03 -32.69 -0.33 -6.77 16 18 C 0.09 1.50 2.92 -29.94 -0.09 1.41 16 19 H 0.06 0.89 7.46 -51.93 -0.39 0.51 16 20 C -0.15 -2.00 9.48 37.16 0.35 -1.65 16 21 C 0.03 0.57 3.31 -6.53 -0.02 0.55 16 22 H 0.03 0.53 8.14 -51.93 -0.42 0.10 16 23 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 24 H 0.06 0.99 7.84 -51.93 -0.41 0.58 16 25 H 0.06 1.24 6.02 -51.93 -0.31 0.93 16 26 H 0.05 1.07 3.27 -51.92 -0.17 0.90 16 27 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 28 H 0.06 1.30 7.42 -51.93 -0.39 0.91 16 29 H 0.04 0.81 7.03 -51.93 -0.37 0.45 16 30 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 31 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 32 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 33 H 0.05 0.75 7.25 -51.93 -0.38 0.37 16 34 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 35 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 37 H 0.05 1.01 6.40 -51.93 -0.33 0.68 16 38 H 0.08 1.60 5.62 -51.93 -0.29 1.31 16 LS Contribution 279.99 15.07 4.22 4.22 Total: -1.00 -29.06 279.99 -6.57 -35.63 By element: Atomic # 1 Polarization: 6.52 SS G_CDS: -6.30 Total: 0.22 kcal Atomic # 6 Polarization: -13.29 SS G_CDS: 0.08 Total: -13.21 kcal Atomic # 7 Polarization: -37.52 SS G_CDS: -0.08 Total: -37.60 kcal Atomic # 8 Polarization: -6.44 SS G_CDS: -0.33 Total: -6.77 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -4.15 Total: 17.52 kcal Total LS contribution 4.22 Total: 4.22 kcal Total: -29.06 -6.57 -35.63 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000217571123.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.566 kcal (2) G-P(sol) polarization free energy of solvation -29.056 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.622 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.570 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.626 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.192 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds