Wall clock time and date at job start Sun Mar 29 2020 21:48:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52996 * 109.47160 * 2 1 4 4 H 1.08996 * 109.47734 * 57.21313 * 3 2 1 5 5 C 1.50705 * 109.47055 * 177.21356 * 3 2 1 6 6 H 1.08001 * 119.99741 * 119.99621 * 5 3 2 7 7 C 1.37878 * 119.99956 * 299.72436 * 5 3 2 8 8 N 1.31512 * 119.99955 * 180.02562 * 7 5 3 9 9 Si 1.86798 * 119.99833 * 359.97438 * 7 5 3 10 10 H 1.48500 * 109.47310 * 90.00480 * 9 7 5 11 11 H 1.48500 * 109.46945 * 210.00315 * 9 7 5 12 12 H 1.48494 * 109.47405 * 329.99995 * 9 7 5 13 13 N 1.46897 * 109.46768 * 297.21135 * 3 2 1 14 14 C 1.44020 * 110.99907 * 174.34108 * 13 3 2 15 15 C 1.54617 * 112.48363 * 217.17367 * 14 13 3 16 16 C 1.54575 * 110.90660 * 319.61375 * 15 14 13 17 17 O 1.39912 * 113.22142 * 319.28056 * 16 15 14 18 18 C 1.44521 * 112.80552 * 94.89809 * 17 16 15 19 19 H 1.08999 * 109.10932 * 40.92134 * 18 17 16 20 20 C 1.52998 * 109.11342 * 159.98055 * 18 17 16 21 21 C 1.46261 * 111.31152 * 280.45302 * 18 17 16 22 22 H 1.08994 * 109.46968 * 185.08099 * 1 2 3 23 23 H 1.09001 * 109.46941 * 305.08157 * 1 2 3 24 24 H 1.08999 * 109.46784 * 65.07999 * 1 2 3 25 25 H 1.09000 * 109.47142 * 239.99371 * 2 1 3 26 26 H 1.09009 * 109.46590 * 119.99644 * 2 1 3 27 27 H 0.97000 * 120.00327 * 179.97438 * 8 7 5 28 28 H 1.09002 * 108.87985 * 337.95052 * 14 13 3 29 29 H 1.09002 * 108.87565 * 96.40396 * 14 13 3 30 30 H 1.08999 * 109.19317 * 199.24396 * 15 14 13 31 31 H 1.08997 * 109.14812 * 79.95602 * 15 14 13 32 32 H 1.09005 * 108.72791 * 198.32062 * 16 15 14 33 33 H 1.08996 * 108.73820 * 80.25043 * 16 15 14 34 34 H 1.08993 * 109.47160 * 181.81581 * 20 18 17 35 35 H 1.09001 * 109.47085 * 301.81537 * 20 18 17 36 36 H 1.09002 * 109.46765 * 61.80809 * 20 18 17 37 37 H 1.09003 * 108.91446 * 298.76079 * 21 18 17 38 38 H 1.08991 * 108.91693 * 180.21666 * 21 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6366 1.9706 0.8639 5 6 3.5455 1.4430 0.0691 6 1 4.1222 1.8976 -0.7229 7 6 4.1864 0.8681 1.1460 8 7 5.5001 0.8690 1.2065 9 14 3.1886 0.0891 2.5197 10 1 2.9551 -1.3444 2.2104 11 1 3.9335 0.2045 3.7992 12 1 1.8842 0.7881 2.6417 13 7 1.6061 2.1151 -1.2317 14 6 1.9553 3.5122 -1.2072 15 6 0.8733 4.4035 -1.8594 16 6 0.3044 3.7378 -3.1332 17 8 1.2840 3.1169 -3.9157 18 6 1.4162 1.7059 -3.6321 19 1 0.4243 1.2748 -3.4964 20 6 2.1016 1.0192 -4.8151 21 6 2.2067 1.4785 -2.4228 22 1 -0.3633 -1.0236 0.0910 23 1 -0.3633 0.5907 0.8410 24 1 -0.3633 0.4330 -0.9320 25 1 1.8934 -0.5139 -0.8899 26 1 1.8933 -0.5138 0.8901 27 1 5.9511 0.4648 1.9643 28 1 2.0917 3.8236 -0.1716 29 1 2.8952 3.6502 -1.7418 30 1 1.3128 5.3653 -2.1236 31 1 0.0643 4.5632 -1.1467 32 1 -0.1927 4.4995 -3.7340 33 1 -0.4333 2.9915 -2.8386 34 1 2.1753 -0.0508 -4.6213 35 1 1.5170 1.1851 -5.7200 36 1 3.1008 1.4344 -4.9470 37 1 3.2073 1.8839 -2.5733 38 1 2.2848 0.4055 -2.2482 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000217571123.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:48:45 Heat of formation + Delta-G solvation = -59.331797 kcal Electronic energy + Delta-G solvation = -17427.875271 eV Core-core repulsion = 14883.733245 eV Total energy + Delta-G solvation = -2544.142026 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.86274 -38.20694 -34.87935 -34.55570 -33.75179 -30.91821 -28.94629 -27.48245 -25.76894 -24.19368 -22.39985 -21.70483 -20.91711 -18.85028 -17.90105 -17.12052 -16.58946 -16.42913 -15.80922 -15.36939 -15.13050 -14.46116 -14.18775 -13.90933 -13.73680 -13.53937 -13.42879 -13.11785 -13.03742 -12.68976 -12.51283 -12.42944 -12.04991 -11.75739 -11.67979 -11.42858 -11.33887 -11.24847 -11.05588 -10.69980 -10.38271 -9.05542 -8.34411 -6.39632 1.27757 1.33510 1.43875 2.27991 2.95392 3.01072 3.16599 4.00994 4.12560 4.20937 4.25626 4.34715 4.40276 4.44046 4.53832 4.61422 4.70110 4.73386 4.81932 4.90295 4.97191 5.07488 5.10706 5.13301 5.19972 5.20601 5.22149 5.29359 5.33748 5.45245 5.49265 5.61176 6.14155 6.33325 6.44897 6.50902 6.68940 7.29064 8.82334 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.030170 B = 0.009469 C = 0.009366 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 927.838409 B = 2956.156675 C = 2988.888220 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.123 4.123 3 C 0.185 3.815 4 H 0.032 0.968 5 C -0.540 4.540 6 H 0.029 0.971 7 C 0.015 3.985 8 N -0.948 5.948 9 Si 0.950 3.050 10 H -0.264 1.264 11 H -0.302 1.302 12 H -0.245 1.245 13 N -0.504 5.504 14 C 0.067 3.933 15 C -0.133 4.133 16 C 0.070 3.930 17 O -0.392 6.392 18 C 0.094 3.906 19 H 0.078 0.922 20 C -0.142 4.142 21 C 0.039 3.961 22 H 0.058 0.942 23 H 0.045 0.955 24 H 0.068 0.932 25 H 0.059 0.941 26 H 0.035 0.965 27 H 0.265 0.735 28 H 0.043 0.957 29 H 0.004 0.996 30 H 0.067 0.933 31 H 0.082 0.918 32 H 0.093 0.907 33 H 0.058 0.942 34 H 0.082 0.918 35 H 0.080 0.920 36 H 0.046 0.954 37 H 0.006 0.994 38 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.339 0.727 -7.245 15.197 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.161 4.161 3 C 0.076 3.924 4 H 0.049 0.951 5 C -0.579 4.579 6 H 0.047 0.953 7 C -0.183 4.183 8 N -0.588 5.588 9 Si 0.777 3.223 10 H -0.190 1.190 11 H -0.230 1.230 12 H -0.169 1.169 13 N -0.227 5.227 14 C -0.063 4.063 15 C -0.171 4.171 16 C -0.007 4.007 17 O -0.311 6.311 18 C 0.037 3.963 19 H 0.096 0.904 20 C -0.200 4.200 21 C -0.089 4.089 22 H 0.077 0.923 23 H 0.064 0.936 24 H 0.087 0.913 25 H 0.077 0.923 26 H 0.054 0.946 27 H 0.074 0.926 28 H 0.061 0.939 29 H 0.023 0.977 30 H 0.086 0.914 31 H 0.101 0.899 32 H 0.111 0.889 33 H 0.076 0.924 34 H 0.100 0.900 35 H 0.099 0.901 36 H 0.066 0.934 37 H 0.024 0.976 38 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -13.615 0.740 -7.314 15.473 hybrid contribution 1.595 -0.250 1.285 2.063 sum -12.020 0.490 -6.029 13.456 Atomic orbital electron populations 1.21619 0.93958 1.01031 1.02289 1.21888 0.97018 0.97108 1.00046 1.19763 0.91214 0.92284 0.89102 0.95056 1.21900 0.92664 1.37056 1.06311 0.95275 1.25864 0.95590 0.96196 1.00617 1.70073 1.09769 1.46753 1.32192 0.85833 0.79351 0.79700 0.77466 1.18984 1.22967 1.16867 1.61961 1.56500 1.01967 1.02232 1.21671 0.96058 0.89612 0.98910 1.22691 0.98615 0.97834 0.97976 1.22208 0.89833 0.97217 0.91479 1.87684 1.60339 1.22516 1.60584 1.21297 0.99617 0.81604 0.93825 0.90443 1.21801 1.00549 1.00385 0.97250 1.21572 0.95649 1.00300 0.91403 0.92311 0.93588 0.91321 0.92279 0.94641 0.92634 0.93866 0.97734 0.91399 0.89939 0.88930 0.92390 0.89951 0.90117 0.93443 0.97557 0.90516 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.16 9.71 71.98 0.70 -3.46 16 2 C -0.12 -4.97 4.80 30.59 0.15 -4.82 16 3 C 0.18 8.44 1.16 44.17 0.05 8.49 16 4 H 0.03 1.50 6.92 -2.39 -0.02 1.48 16 5 C -0.54 -30.45 7.95 25.60 0.20 -30.25 16 6 H 0.03 1.87 6.72 -2.91 -0.02 1.85 16 7 C 0.02 0.88 5.45 84.66 0.46 1.34 16 8 N -0.95 -59.54 13.96 21.45 0.30 -59.24 16 9 Si 0.95 44.74 24.41 68.60 1.67 46.42 16 10 H -0.26 -11.77 6.84 99.48 0.68 -11.09 16 11 H -0.30 -14.31 7.11 99.48 0.71 -13.61 16 12 H -0.24 -10.68 6.53 99.48 0.65 -10.03 16 13 N -0.50 -20.15 3.69 -889.65 -3.28 -23.43 16 14 C 0.07 2.69 4.54 87.39 0.40 3.08 16 15 C -0.13 -3.94 6.52 31.68 0.21 -3.74 16 16 C 0.07 1.91 6.20 72.52 0.45 2.36 16 17 O -0.39 -12.64 10.03 -139.90 -1.40 -14.04 16 18 C 0.09 2.88 2.92 28.52 0.08 2.97 16 19 H 0.08 2.13 7.46 -2.39 -0.02 2.11 16 20 C -0.14 -3.67 9.48 71.98 0.68 -2.99 16 21 C 0.04 1.51 3.31 84.05 0.28 1.78 16 22 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 23 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 24 H 0.07 2.03 7.84 -2.39 -0.02 2.01 16 25 H 0.06 2.37 6.02 -2.39 -0.01 2.36 16 26 H 0.04 1.52 3.27 -2.38 -0.01 1.51 16 27 H 0.26 15.62 8.31 -92.71 -0.77 14.85 16 28 H 0.04 1.85 7.42 -2.39 -0.02 1.83 16 29 H 0.00 0.20 7.03 -2.39 -0.02 0.18 16 30 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 31 H 0.08 2.16 8.14 -2.39 -0.02 2.14 16 32 H 0.09 2.02 8.14 -2.38 -0.02 2.00 16 33 H 0.06 1.50 7.25 -2.39 -0.02 1.48 16 34 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 35 H 0.08 1.73 8.14 -2.39 -0.02 1.72 16 36 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 37 H 0.01 0.28 6.40 -2.39 -0.02 0.27 16 38 H 0.08 3.02 5.62 -2.39 -0.01 3.00 16 Total: -1.00 -65.30 279.99 1.88 -63.42 By element: Atomic # 1 Polarization: 11.16 SS G_CDS: 0.94 Total: 12.10 kcal Atomic # 6 Polarization: -28.88 SS G_CDS: 3.66 Total: -25.22 kcal Atomic # 7 Polarization: -79.68 SS G_CDS: -2.98 Total: -82.67 kcal Atomic # 8 Polarization: -12.64 SS G_CDS: -1.40 Total: -14.04 kcal Atomic # 14 Polarization: 44.74 SS G_CDS: 1.67 Total: 46.42 kcal Total: -65.30 1.88 -63.42 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000217571123.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.086 kcal (2) G-P(sol) polarization free energy of solvation -65.299 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.213 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.881 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.418 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.332 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds