Wall clock time and date at job start Sun Mar 29 2020 21:47:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52991 * 109.47465 * 2 1 4 4 H 1.09007 * 109.47121 * 57.55460 * 3 2 1 5 5 C 1.50702 * 109.47773 * 177.55058 * 3 2 1 6 6 H 1.08001 * 119.99890 * 119.99554 * 5 3 2 7 7 C 1.37872 * 119.99992 * 300.00746 * 5 3 2 8 8 N 1.31515 * 120.00394 * 179.97438 * 7 5 3 9 9 Si 1.86805 * 119.99920 * 359.97438 * 7 5 3 10 10 H 1.48495 * 109.47394 * 90.00243 * 9 7 5 11 11 H 1.48502 * 109.47081 * 210.00666 * 9 7 5 12 12 H 1.48499 * 109.47123 * 329.99898 * 9 7 5 13 13 N 1.46901 * 109.47382 * 297.55263 * 3 2 1 14 14 C 1.46839 * 111.00338 * 170.95003 * 13 3 2 15 15 C 1.53041 * 109.52769 * 185.84099 * 14 13 3 16 16 C 1.53124 * 109.27424 * 300.82535 * 15 14 13 17 17 C 1.53117 * 109.16284 * 57.65302 * 16 15 14 18 18 H 1.08998 * 109.50591 * 62.32292 * 17 16 15 19 19 C 1.52998 * 109.50206 * 182.40347 * 17 16 15 20 20 O 1.42899 * 109.47174 * 294.99698 * 19 17 16 21 21 C 1.46844 * 110.99809 * 295.16549 * 13 3 2 22 22 H 1.08997 * 109.46726 * 305.43266 * 1 2 3 23 23 H 1.08990 * 109.47190 * 65.43496 * 1 2 3 24 24 H 1.09000 * 109.47282 * 185.43982 * 1 2 3 25 25 H 1.08999 * 109.46863 * 239.99843 * 2 1 3 26 26 H 1.09001 * 109.47126 * 120.00372 * 2 1 3 27 27 H 0.97001 * 120.00138 * 179.97438 * 8 7 5 28 28 H 1.09000 * 109.46667 * 305.85677 * 14 13 3 29 29 H 1.09000 * 109.46378 * 65.82730 * 14 13 3 30 30 H 1.09003 * 109.49985 * 60.76127 * 15 14 13 31 31 H 1.08995 * 109.50427 * 180.84077 * 15 14 13 32 32 H 1.08999 * 109.51590 * 177.55412 * 16 15 14 33 33 H 1.08995 * 109.51962 * 297.68198 * 16 15 14 34 34 H 1.09001 * 109.46964 * 55.00119 * 19 17 16 35 35 H 1.09006 * 109.46678 * 174.99872 * 19 17 16 36 36 H 0.96699 * 113.99606 * 180.02562 * 20 19 17 37 37 H 1.08996 * 109.46389 * 294.16731 * 21 13 3 38 38 H 1.08997 * 109.46471 * 54.14157 * 21 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6414 1.9688 0.8673 5 6 3.5458 1.4429 0.0607 6 1 4.1181 1.8991 -0.7335 7 6 4.1928 0.8608 1.1300 8 7 5.5069 0.8607 1.1828 9 14 3.2029 0.0721 2.5039 10 1 2.9680 -1.3593 2.1860 11 1 3.9548 0.1789 3.7800 12 1 1.8989 0.7699 2.6380 13 7 1.5993 2.1177 -1.2279 14 6 1.8835 3.5571 -1.1680 15 6 1.2830 4.2486 -2.3941 16 6 1.8881 3.6422 -3.6633 17 6 1.6198 2.1348 -3.6774 18 1 0.5448 1.9566 -3.7050 19 6 2.2728 1.5113 -4.9125 20 8 1.6433 2.0179 -6.0911 21 6 2.2106 1.5046 -2.4140 22 1 -0.3633 0.5958 0.8373 23 1 -0.3633 0.4272 -0.9346 24 1 -0.3634 -1.0230 0.0974 25 1 1.8933 -0.5139 -0.8900 26 1 1.8933 -0.5139 0.8900 27 1 5.9621 0.4515 1.9354 28 1 1.4442 3.9767 -0.2629 29 1 2.9621 3.7141 -1.1544 30 1 0.2027 4.1037 -2.4008 31 1 1.5070 5.3146 -2.3568 32 1 1.4313 4.1016 -4.5399 33 1 2.9630 3.8220 -3.6761 34 1 3.3330 1.7639 -4.9296 35 1 2.1580 0.4279 -4.8763 36 1 2.0074 1.6644 -6.9143 37 1 3.2876 1.6712 -2.3947 38 1 2.0089 0.4335 -2.4140 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000218454401.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:47:46 Heat of formation + Delta-G solvation = -59.110749 kcal Electronic energy + Delta-G solvation = -17068.755880 eV Core-core repulsion = 14524.623439 eV Total energy + Delta-G solvation = -2544.132441 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -38.88183 -36.67978 -34.68457 -32.04139 -31.39538 -30.49932 -27.07685 -25.31483 -23.65662 -22.48099 -21.07405 -19.62657 -19.06603 -17.27739 -16.45370 -15.62630 -14.86333 -14.47361 -14.11130 -13.98862 -13.35902 -13.26278 -12.72353 -12.65400 -12.39047 -12.06950 -11.66868 -11.59305 -11.31198 -11.04178 -10.73334 -10.47308 -10.41646 -10.21039 -9.94793 -9.80647 -9.72528 -9.53973 -9.39979 -9.18670 -8.57214 -7.13045 -6.12818 -4.13345 3.25033 3.36269 3.38454 4.32149 4.36690 4.98729 5.15764 5.19586 5.29940 5.44304 5.62256 5.76290 5.92951 5.95418 5.98377 6.03762 6.14011 6.17925 6.23799 6.32962 6.44086 6.50135 6.52925 6.68368 6.72189 6.77571 6.83207 6.92884 6.97363 7.12036 7.25419 7.57044 7.72040 8.12643 8.19217 8.45039 8.89457 9.51021 10.99948 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.030792 B = 0.008476 C = 0.008218 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 909.122870 B = 3302.584864 C = 3406.342786 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.121 4.121 3 C 0.181 3.819 4 H 0.038 0.962 5 C -0.544 4.544 6 H 0.076 0.924 7 C 0.073 3.927 8 N -0.899 5.899 9 Si 0.887 3.113 10 H -0.279 1.279 11 H -0.299 1.299 12 H -0.264 1.264 13 N -0.524 5.524 14 C 0.061 3.939 15 C -0.116 4.116 16 C -0.107 4.107 17 C -0.084 4.084 18 H 0.077 0.923 19 C 0.080 3.920 20 O -0.575 6.575 21 C 0.068 3.932 22 H 0.042 0.958 23 H 0.060 0.940 24 H 0.032 0.968 25 H 0.058 0.942 26 H 0.045 0.955 27 H 0.263 0.737 28 H 0.062 0.938 29 H 0.040 0.960 30 H 0.062 0.938 31 H 0.056 0.944 32 H 0.059 0.941 33 H 0.054 0.946 34 H 0.044 0.956 35 H 0.044 0.956 36 H 0.373 0.627 37 H 0.045 0.955 38 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.520 1.470 -8.681 11.579 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.159 4.159 3 C 0.073 3.927 4 H 0.056 0.944 5 C -0.582 4.582 6 H 0.094 0.906 7 C -0.129 4.129 8 N -0.536 5.536 9 Si 0.718 3.282 10 H -0.206 1.206 11 H -0.226 1.226 12 H -0.189 1.189 13 N -0.248 5.248 14 C -0.068 4.068 15 C -0.154 4.154 16 C -0.145 4.145 17 C -0.103 4.103 18 H 0.095 0.905 19 C 0.002 3.998 20 O -0.379 6.379 21 C -0.060 4.060 22 H 0.061 0.939 23 H 0.079 0.921 24 H 0.051 0.949 25 H 0.077 0.923 26 H 0.064 0.936 27 H 0.073 0.927 28 H 0.081 0.919 29 H 0.058 0.942 30 H 0.081 0.919 31 H 0.075 0.925 32 H 0.078 0.922 33 H 0.073 0.927 34 H 0.063 0.937 35 H 0.063 0.937 36 H 0.219 0.781 37 H 0.063 0.937 38 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -8.225 1.696 -8.147 11.701 hybrid contribution 1.011 -0.819 0.538 1.408 sum -7.214 0.876 -7.609 10.522 Atomic orbital electron populations 1.21705 0.97293 0.99104 1.01768 1.21922 0.94118 0.99334 1.00506 1.19717 0.94181 0.90390 0.88389 0.94395 1.21637 0.90410 1.38145 1.08049 0.90584 1.24986 0.94686 0.95414 0.97832 1.69916 1.07531 1.44846 1.31355 0.86850 0.80308 0.79902 0.81164 1.20568 1.22628 1.18883 1.62239 1.57660 1.01997 1.02869 1.21888 0.98987 0.89182 0.96696 1.21610 1.00499 0.98301 0.94940 1.21503 1.00319 0.95066 0.97565 1.21209 1.00984 0.95476 0.92668 0.90501 1.22236 0.95673 0.96765 0.85082 1.86475 1.63760 1.71607 1.16083 1.21845 0.97427 0.98234 0.88529 0.93854 0.92091 0.94931 0.92327 0.93643 0.92687 0.91935 0.94155 0.91936 0.92520 0.92202 0.92725 0.93744 0.93749 0.78140 0.93654 0.91315 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.59 9.71 37.16 0.36 -2.22 16 2 C -0.12 -2.61 4.76 -26.74 -0.13 -2.74 16 3 C 0.18 4.19 1.33 -68.87 -0.09 4.10 16 4 H 0.04 0.93 7.06 -51.92 -0.37 0.56 16 5 C -0.54 -14.72 7.80 -34.44 -0.27 -14.99 16 6 H 0.08 2.25 6.09 -52.49 -0.32 1.93 16 7 C 0.07 2.08 5.45 -17.82 -0.10 1.98 16 8 N -0.90 -27.09 13.96 55.43 0.77 -26.31 16 9 Si 0.89 21.83 24.39 -169.99 -4.15 17.68 16 10 H -0.28 -6.71 6.85 56.52 0.39 -6.32 16 11 H -0.30 -7.40 7.11 56.52 0.40 -7.00 16 12 H -0.26 -6.25 6.53 56.52 0.37 -5.88 16 13 N -0.52 -10.61 4.06 -228.08 -0.92 -11.54 16 14 C 0.06 1.17 5.18 -3.84 -0.02 1.15 16 15 C -0.12 -1.83 6.09 -26.65 -0.16 -1.99 16 16 C -0.11 -1.67 5.15 -26.61 -0.14 -1.81 16 17 C -0.08 -1.36 2.59 -90.54 -0.23 -1.59 16 18 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 19 C 0.08 1.12 6.43 37.16 0.24 1.36 16 20 O -0.57 -7.44 13.25 -35.23 -0.47 -7.91 16 21 C 0.07 1.30 4.07 -3.83 -0.02 1.28 16 22 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 23 H 0.06 1.07 7.84 -51.93 -0.41 0.67 16 24 H 0.03 0.53 8.14 -51.93 -0.42 0.10 16 25 H 0.06 1.25 6.29 -51.93 -0.33 0.92 16 26 H 0.05 1.04 3.23 -51.93 -0.17 0.88 16 27 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 28 H 0.06 1.18 8.03 -51.93 -0.42 0.76 16 29 H 0.04 0.86 7.23 -51.93 -0.38 0.49 16 30 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 31 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 32 H 0.06 0.90 7.90 -51.93 -0.41 0.49 16 33 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 34 H 0.04 0.61 8.14 -51.93 -0.42 0.18 16 35 H 0.04 0.58 8.14 -51.93 -0.42 0.15 16 36 H 0.37 3.00 9.12 45.56 0.42 3.41 16 37 H 0.05 0.98 6.42 -51.93 -0.33 0.64 16 38 H 0.07 1.31 6.13 -51.93 -0.32 1.00 16 LS Contribution 283.47 15.07 4.27 4.27 Total: -1.00 -29.92 283.47 -6.64 -36.55 By element: Atomic # 1 Polarization: 8.33 SS G_CDS: -5.59 Total: 2.74 kcal Atomic # 6 Polarization: -14.94 SS G_CDS: -0.55 Total: -15.49 kcal Atomic # 7 Polarization: -37.70 SS G_CDS: -0.15 Total: -37.85 kcal Atomic # 8 Polarization: -7.44 SS G_CDS: -0.47 Total: -7.91 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -4.15 Total: 17.68 kcal Total LS contribution 4.27 Total: 4.27 kcal Total: -29.92 -6.64 -36.55 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000218454401.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.556 kcal (2) G-P(sol) polarization free energy of solvation -29.917 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.473 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.638 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.554 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.111 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds