Wall clock time and date at job start Sun Mar 29 2020 21:47:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52991 * 109.47465 * 2 1 4 4 H 1.09007 * 109.47121 * 57.55460 * 3 2 1 5 5 C 1.50702 * 109.47773 * 177.55058 * 3 2 1 6 6 H 1.08001 * 119.99890 * 119.99554 * 5 3 2 7 7 C 1.37872 * 119.99992 * 300.00746 * 5 3 2 8 8 N 1.31515 * 120.00394 * 179.97438 * 7 5 3 9 9 Si 1.86805 * 119.99920 * 359.97438 * 7 5 3 10 10 H 1.48495 * 109.47394 * 90.00243 * 9 7 5 11 11 H 1.48502 * 109.47081 * 210.00666 * 9 7 5 12 12 H 1.48499 * 109.47123 * 329.99898 * 9 7 5 13 13 N 1.46901 * 109.47382 * 297.55263 * 3 2 1 14 14 C 1.46839 * 111.00338 * 170.95003 * 13 3 2 15 15 C 1.53041 * 109.52769 * 185.84099 * 14 13 3 16 16 C 1.53124 * 109.27424 * 300.82535 * 15 14 13 17 17 C 1.53117 * 109.16284 * 57.65302 * 16 15 14 18 18 H 1.08998 * 109.50591 * 62.32292 * 17 16 15 19 19 C 1.52998 * 109.50206 * 182.40347 * 17 16 15 20 20 O 1.42899 * 109.47174 * 294.99698 * 19 17 16 21 21 C 1.46844 * 110.99809 * 295.16549 * 13 3 2 22 22 H 1.08997 * 109.46726 * 305.43266 * 1 2 3 23 23 H 1.08990 * 109.47190 * 65.43496 * 1 2 3 24 24 H 1.09000 * 109.47282 * 185.43982 * 1 2 3 25 25 H 1.08999 * 109.46863 * 239.99843 * 2 1 3 26 26 H 1.09001 * 109.47126 * 120.00372 * 2 1 3 27 27 H 0.97001 * 120.00138 * 179.97438 * 8 7 5 28 28 H 1.09000 * 109.46667 * 305.85677 * 14 13 3 29 29 H 1.09000 * 109.46378 * 65.82730 * 14 13 3 30 30 H 1.09003 * 109.49985 * 60.76127 * 15 14 13 31 31 H 1.08995 * 109.50427 * 180.84077 * 15 14 13 32 32 H 1.08999 * 109.51590 * 177.55412 * 16 15 14 33 33 H 1.08995 * 109.51962 * 297.68198 * 16 15 14 34 34 H 1.09001 * 109.46964 * 55.00119 * 19 17 16 35 35 H 1.09006 * 109.46678 * 174.99872 * 19 17 16 36 36 H 0.96699 * 113.99606 * 180.02562 * 20 19 17 37 37 H 1.08996 * 109.46389 * 294.16731 * 21 13 3 38 38 H 1.08997 * 109.46471 * 54.14157 * 21 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6414 1.9688 0.8673 5 6 3.5458 1.4429 0.0607 6 1 4.1181 1.8991 -0.7335 7 6 4.1928 0.8608 1.1300 8 7 5.5069 0.8607 1.1828 9 14 3.2029 0.0721 2.5039 10 1 2.9680 -1.3593 2.1860 11 1 3.9548 0.1789 3.7800 12 1 1.8989 0.7699 2.6380 13 7 1.5993 2.1177 -1.2279 14 6 1.8835 3.5571 -1.1680 15 6 1.2830 4.2486 -2.3941 16 6 1.8881 3.6422 -3.6633 17 6 1.6198 2.1348 -3.6774 18 1 0.5448 1.9566 -3.7050 19 6 2.2728 1.5113 -4.9125 20 8 1.6433 2.0179 -6.0911 21 6 2.2106 1.5046 -2.4140 22 1 -0.3633 0.5958 0.8373 23 1 -0.3633 0.4272 -0.9346 24 1 -0.3634 -1.0230 0.0974 25 1 1.8933 -0.5139 -0.8900 26 1 1.8933 -0.5139 0.8900 27 1 5.9621 0.4515 1.9354 28 1 1.4442 3.9767 -0.2629 29 1 2.9621 3.7141 -1.1544 30 1 0.2027 4.1037 -2.4008 31 1 1.5070 5.3146 -2.3568 32 1 1.4313 4.1016 -4.5399 33 1 2.9630 3.8220 -3.6761 34 1 3.3330 1.7639 -4.9296 35 1 2.1580 0.4279 -4.8763 36 1 2.0074 1.6644 -6.9143 37 1 3.2876 1.6712 -2.3947 38 1 2.0089 0.4335 -2.4140 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000218454401.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:47:45 Heat of formation + Delta-G solvation = -81.758147 kcal Electronic energy + Delta-G solvation = -17069.737945 eV Core-core repulsion = 14524.623439 eV Total energy + Delta-G solvation = -2545.114506 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.39845 -37.91605 -36.20539 -34.12840 -32.82297 -31.95358 -28.96557 -26.60526 -25.39044 -24.10613 -22.46999 -21.27077 -20.67742 -18.78384 -18.01149 -17.37453 -16.26961 -16.00496 -15.72924 -15.38470 -15.02051 -14.83253 -14.46999 -14.11344 -13.80260 -13.66143 -13.31991 -13.11994 -12.84920 -12.71041 -12.42196 -12.12757 -11.92677 -11.70601 -11.53522 -11.36873 -11.28058 -11.08303 -11.03256 -10.77177 -10.64620 -8.90511 -8.32437 -6.36406 1.28891 1.34585 1.44877 2.29746 3.02796 3.08261 3.62425 3.86039 3.99260 4.13517 4.35342 4.39130 4.42752 4.52215 4.57362 4.65980 4.68285 4.69215 4.79303 4.94670 4.98793 5.01665 5.11244 5.15157 5.17743 5.28791 5.30238 5.38138 5.47184 5.49445 5.58167 5.63740 6.16304 6.40349 6.52047 6.72308 6.94445 7.32002 8.83898 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.030792 B = 0.008476 C = 0.008218 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 909.122870 B = 3302.584864 C = 3406.342786 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.121 4.121 3 C 0.183 3.817 4 H 0.030 0.970 5 C -0.537 4.537 6 H 0.036 0.964 7 C 0.015 3.985 8 N -0.948 5.948 9 Si 0.947 3.053 10 H -0.266 1.266 11 H -0.302 1.302 12 H -0.246 1.246 13 N -0.515 5.515 14 C 0.059 3.941 15 C -0.106 4.106 16 C -0.104 4.104 17 C -0.079 4.079 18 H 0.080 0.920 19 C 0.087 3.913 20 O -0.583 6.583 21 C 0.074 3.926 22 H 0.045 0.955 23 H 0.067 0.933 24 H 0.056 0.944 25 H 0.056 0.944 26 H 0.034 0.966 27 H 0.264 0.736 28 H 0.064 0.936 29 H 0.006 0.994 30 H 0.075 0.925 31 H 0.076 0.924 32 H 0.076 0.924 33 H 0.042 0.958 34 H 0.041 0.959 35 H 0.054 0.946 36 H 0.396 0.604 37 H 0.010 0.990 38 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.103 1.156 -9.355 13.817 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.159 4.159 3 C 0.075 3.925 4 H 0.048 0.952 5 C -0.576 4.576 6 H 0.054 0.946 7 C -0.182 4.182 8 N -0.588 5.588 9 Si 0.775 3.225 10 H -0.193 1.193 11 H -0.230 1.230 12 H -0.170 1.170 13 N -0.238 5.238 14 C -0.070 4.070 15 C -0.144 4.144 16 C -0.142 4.142 17 C -0.097 4.097 18 H 0.099 0.901 19 C 0.008 3.992 20 O -0.391 6.391 21 C -0.054 4.054 22 H 0.064 0.936 23 H 0.086 0.914 24 H 0.075 0.925 25 H 0.074 0.926 26 H 0.052 0.948 27 H 0.073 0.927 28 H 0.082 0.918 29 H 0.024 0.976 30 H 0.093 0.907 31 H 0.095 0.905 32 H 0.094 0.906 33 H 0.061 0.939 34 H 0.059 0.941 35 H 0.073 0.927 36 H 0.245 0.755 37 H 0.028 0.972 38 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -10.828 1.385 -8.860 14.059 hybrid contribution 1.876 -0.657 0.644 2.090 sum -8.951 0.727 -8.216 12.172 Atomic orbital electron populations 1.21614 0.94177 1.00865 1.02277 1.21848 0.96845 0.97367 0.99860 1.19622 0.91247 0.92068 0.89582 0.95225 1.21889 0.92674 1.36517 1.06504 0.94607 1.25820 0.95527 0.96335 1.00550 1.70065 1.09464 1.46795 1.32509 0.85868 0.79364 0.79638 0.77669 1.19264 1.22977 1.17006 1.62304 1.56870 1.02460 1.02175 1.21965 0.97185 0.88951 0.98851 1.21558 1.00800 0.99007 0.92995 1.21487 0.99718 0.94872 0.98087 1.21111 1.00923 0.95666 0.92047 0.90148 1.22042 0.95187 0.97096 0.84826 1.86403 1.63964 1.71960 1.16799 1.21795 0.95431 0.98500 0.89690 0.93591 0.91403 0.92500 0.92552 0.94774 0.92700 0.91776 0.97574 0.90679 0.90530 0.90582 0.93928 0.94061 0.92747 0.75493 0.97196 0.91403 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.39 9.71 71.98 0.70 -3.69 16 2 C -0.12 -5.04 4.76 30.59 0.15 -4.89 16 3 C 0.18 8.44 1.33 44.17 0.06 8.50 16 4 H 0.03 1.43 7.06 -2.38 -0.02 1.41 16 5 C -0.54 -30.04 7.80 25.60 0.20 -29.84 16 6 H 0.04 2.25 6.09 -2.91 -0.02 2.23 16 7 C 0.02 0.89 5.45 84.65 0.46 1.35 16 8 N -0.95 -59.23 13.96 21.45 0.30 -58.93 16 9 Si 0.95 45.06 24.39 68.60 1.67 46.73 16 10 H -0.27 -12.09 6.85 99.48 0.68 -11.41 16 11 H -0.30 -14.41 7.11 99.48 0.71 -13.71 16 12 H -0.25 -10.90 6.53 99.48 0.65 -10.25 16 13 N -0.52 -20.64 4.06 -875.53 -3.55 -24.19 16 14 C 0.06 2.25 5.18 86.33 0.45 2.70 16 15 C -0.11 -3.15 6.09 30.65 0.19 -2.96 16 16 C -0.10 -3.09 5.15 30.68 0.16 -2.93 16 17 C -0.08 -2.41 2.59 -10.74 -0.03 -2.44 16 18 H 0.08 2.46 8.14 -2.39 -0.02 2.44 16 19 C 0.09 2.26 6.43 71.98 0.46 2.72 16 20 O -0.58 -13.47 13.25 -148.98 -1.97 -15.44 16 21 C 0.07 2.83 4.07 86.33 0.35 3.19 16 22 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 23 H 0.07 2.16 7.84 -2.39 -0.02 2.14 16 24 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 25 H 0.06 2.33 6.29 -2.39 -0.02 2.32 16 26 H 0.03 1.49 3.23 -2.39 -0.01 1.49 16 27 H 0.26 15.54 8.31 -92.71 -0.77 14.77 16 28 H 0.06 2.39 8.03 -2.39 -0.02 2.37 16 29 H 0.01 0.27 7.23 -2.39 -0.02 0.25 16 30 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 31 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 32 H 0.08 2.06 7.90 -2.39 -0.02 2.04 16 33 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16 34 H 0.04 1.10 8.14 -2.39 -0.02 1.08 16 35 H 0.05 1.31 8.14 -2.38 -0.02 1.29 16 36 H 0.40 5.20 9.12 -74.06 -0.68 4.52 16 37 H 0.01 0.44 6.42 -2.39 -0.02 0.43 16 38 H 0.07 2.57 6.13 -2.39 -0.01 2.55 16 Total: -1.00 -65.56 283.47 -0.13 -65.70 By element: Atomic # 1 Polarization: 14.15 SS G_CDS: 0.28 Total: 14.43 kcal Atomic # 6 Polarization: -31.44 SS G_CDS: 3.14 Total: -28.30 kcal Atomic # 7 Polarization: -79.87 SS G_CDS: -3.25 Total: -83.12 kcal Atomic # 8 Polarization: -13.47 SS G_CDS: -1.97 Total: -15.44 kcal Atomic # 14 Polarization: 45.06 SS G_CDS: 1.67 Total: 46.73 kcal Total: -65.56 -0.13 -65.70 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000218454401.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.060 kcal (2) G-P(sol) polarization free energy of solvation -65.564 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.624 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.134 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.698 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.758 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds