Wall clock time and date at job start Sun Mar 29 2020 21:50:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.47441 * 2 1 4 4 H 1.09001 * 109.47365 * 304.38090 * 3 2 1 5 5 C 1.50696 * 109.47434 * 184.37316 * 3 2 1 6 6 H 1.07998 * 120.00049 * 240.00645 * 5 3 2 7 7 C 1.37880 * 119.99575 * 60.27664 * 5 3 2 8 8 N 1.31510 * 120.00293 * 359.72476 * 7 5 3 9 9 Si 1.86798 * 119.99797 * 179.72817 * 7 5 3 10 10 H 1.48497 * 109.47309 * 359.97438 * 9 7 5 11 11 H 1.48499 * 109.47264 * 120.00131 * 9 7 5 12 12 H 1.48502 * 109.46954 * 240.00148 * 9 7 5 13 13 N 1.46911 * 109.46677 * 64.37346 * 3 2 1 14 14 C 1.46901 * 110.99609 * 205.79576 * 13 3 2 15 15 C 1.52999 * 109.46861 * 174.89867 * 14 13 3 16 16 C 1.52998 * 109.47382 * 180.02562 * 15 14 13 17 17 H 1.09001 * 110.43015 * 303.90757 * 16 15 14 18 18 C 1.54813 * 110.48977 * 181.22007 * 16 15 14 19 19 C 1.54995 * 102.09041 * 220.43763 * 18 16 15 20 20 O 1.44387 * 103.48978 * 37.02455 * 19 18 16 21 21 C 1.43744 * 106.97378 * 319.93681 * 20 19 18 22 22 H 1.08998 * 109.47759 * 174.08239 * 1 2 3 23 23 H 1.09002 * 109.47439 * 294.09277 * 1 2 3 24 24 H 1.09008 * 109.46858 * 54.08433 * 1 2 3 25 25 H 1.08995 * 109.46889 * 240.00153 * 2 1 3 26 26 H 1.08996 * 109.46816 * 120.00481 * 2 1 3 27 27 H 0.96997 * 120.00237 * 179.97438 * 8 7 5 28 28 H 1.00899 * 110.99561 * 81.85000 * 13 3 2 29 29 H 1.09001 * 109.47401 * 294.89785 * 14 13 3 30 30 H 1.08998 * 109.47186 * 54.89705 * 14 13 3 31 31 H 1.09001 * 109.47046 * 300.00135 * 15 14 13 32 32 H 1.08998 * 109.47353 * 59.99940 * 15 14 13 33 33 H 1.08999 * 110.90591 * 338.64059 * 18 16 15 34 34 H 1.09003 * 110.90102 * 102.24447 * 18 16 15 35 35 H 1.08999 * 110.62107 * 278.52157 * 19 18 16 36 36 H 1.08999 * 110.61501 * 155.52160 * 19 18 16 37 37 H 1.08998 * 109.87619 * 267.08832 * 21 20 19 38 38 H 1.09002 * 109.87823 * 145.93522 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6141 1.9785 -0.8481 5 6 3.5432 1.4438 -0.1083 6 1 4.1404 1.8911 0.6724 7 6 4.1556 0.8789 -1.2069 8 7 3.4283 0.3342 -2.1576 9 14 6.0184 0.8874 -1.3449 10 1 6.6001 1.5561 -0.1534 11 1 6.5155 -0.5099 -1.4209 12 1 6.4207 1.6232 -2.5705 13 7 1.6385 2.1038 1.2489 14 6 1.5432 3.5584 1.0672 15 6 1.0020 4.1978 2.3474 16 6 0.9021 5.7128 2.1580 17 1 1.8694 6.1249 1.8707 18 6 0.3850 6.3877 3.4518 19 6 -0.5849 7.4600 2.8932 20 8 -1.1986 6.8031 1.7634 21 6 -0.1654 6.0550 1.1008 22 1 -0.3634 -1.0221 -0.1059 23 1 -0.3634 0.4195 0.9381 24 1 -0.3633 0.6029 -0.8324 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5139 0.8899 27 1 3.8591 -0.0629 -2.9306 28 1 2.2722 1.8739 1.9996 29 1 2.5316 3.9628 0.8488 30 1 0.8698 3.7777 0.2386 31 1 0.0136 3.7934 2.5657 32 1 1.6754 3.9785 3.1759 33 1 -0.1462 5.6714 4.0786 34 1 1.2033 6.8522 4.0019 35 1 -0.0351 8.3443 2.5710 36 1 -1.3356 7.7237 3.6382 37 1 0.2778 6.6574 0.3079 38 1 -0.5814 5.1378 0.6837 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000220889010.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:50:42 Heat of formation + Delta-G solvation = -70.408927 kcal Electronic energy + Delta-G solvation = -16137.928008 eV Core-core repulsion = 13593.305641 eV Total energy + Delta-G solvation = -2544.622367 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.44428 -36.39723 -34.12328 -32.10973 -31.08511 -29.65127 -27.33414 -25.55870 -23.30344 -22.56273 -21.26101 -20.09142 -19.34463 -16.83061 -16.45773 -16.01887 -14.93353 -14.76245 -14.38919 -13.85777 -13.53651 -13.21054 -12.80052 -12.61487 -12.16184 -11.76348 -11.62756 -11.36247 -11.24287 -11.16477 -10.89624 -10.69383 -10.63388 -10.59191 -10.32639 -10.02920 -9.61186 -9.57840 -9.40461 -9.03895 -8.39060 -7.23794 -6.00185 -4.13309 3.24668 3.33298 3.36131 3.97375 4.38355 4.56014 4.73790 4.92212 5.14474 5.24776 5.26335 5.50671 5.53291 5.59287 5.68979 5.86076 5.88028 6.00979 6.08075 6.17957 6.30753 6.41044 6.51974 6.61358 6.73091 6.73943 6.90553 7.15103 7.19129 7.45452 7.60404 7.77685 8.09754 8.15618 8.34166 8.67431 9.00181 9.54399 10.99915 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.030599 B = 0.005882 C = 0.005312 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 914.841113 B = 4758.814110 C = 5269.526738 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.106 4.106 3 C 0.214 3.786 4 H 0.031 0.969 5 C -0.544 4.544 6 H 0.053 0.947 7 C 0.067 3.933 8 N -0.885 5.885 9 Si 0.888 3.112 10 H -0.275 1.275 11 H -0.283 1.283 12 H -0.284 1.284 13 N -0.690 5.690 14 C 0.065 3.935 15 C -0.106 4.106 16 C -0.121 4.121 17 H 0.081 0.919 18 C -0.151 4.151 19 C 0.045 3.955 20 O -0.382 6.382 21 C 0.048 3.952 22 H 0.024 0.976 23 H 0.046 0.954 24 H 0.036 0.964 25 H 0.089 0.911 26 H 0.030 0.970 27 H 0.261 0.739 28 H 0.326 0.674 29 H 0.025 0.975 30 H 0.060 0.940 31 H 0.068 0.932 32 H 0.059 0.941 33 H 0.078 0.922 34 H 0.076 0.924 35 H 0.056 0.944 36 H 0.088 0.912 37 H 0.056 0.944 38 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.953 9.771 8.330 13.762 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.145 4.145 3 C 0.106 3.894 4 H 0.049 0.951 5 C -0.584 4.584 6 H 0.071 0.929 7 C -0.136 4.136 8 N -0.523 5.523 9 Si 0.716 3.284 10 H -0.200 1.200 11 H -0.209 1.209 12 H -0.210 1.210 13 N -0.319 5.319 14 C -0.065 4.065 15 C -0.144 4.144 16 C -0.140 4.140 17 H 0.099 0.901 18 C -0.188 4.188 19 C -0.031 4.031 20 O -0.301 6.301 21 C -0.028 4.028 22 H 0.043 0.957 23 H 0.065 0.935 24 H 0.055 0.945 25 H 0.108 0.892 26 H 0.049 0.951 27 H 0.071 0.929 28 H 0.142 0.858 29 H 0.044 0.956 30 H 0.078 0.922 31 H 0.087 0.913 32 H 0.078 0.922 33 H 0.097 0.903 34 H 0.095 0.905 35 H 0.075 0.925 36 H 0.106 0.894 37 H 0.074 0.926 38 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -5.840 9.575 7.962 13.754 hybrid contribution 2.394 0.212 -0.217 2.413 sum -3.446 9.787 7.745 12.948 Atomic orbital electron populations 1.21687 0.98982 0.98258 1.00368 1.21494 0.92100 0.99253 1.01615 1.19160 0.92697 0.91198 0.86337 0.95115 1.21903 0.92769 1.38067 1.05627 0.92891 1.24938 0.97947 0.95006 0.95671 1.69888 1.34784 1.38226 1.09413 0.86607 0.86112 0.77761 0.77903 1.19980 1.20920 1.21043 1.60894 1.55162 1.06077 1.09785 1.21806 0.98662 0.90214 0.95829 1.21624 1.01982 0.91883 0.98883 1.22559 0.99305 0.97515 0.94625 0.90094 1.23208 0.99374 0.98374 0.97881 1.23521 0.96009 0.95080 0.88535 1.88859 1.33227 1.65311 1.42726 1.23358 0.88484 0.96247 0.94728 0.95683 0.93507 0.94466 0.89247 0.95117 0.92929 0.85818 0.95636 0.92202 0.91283 0.92232 0.90305 0.90519 0.92531 0.89361 0.92588 0.89035 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.83 9.72 37.16 0.36 -2.47 16 2 C -0.11 -2.56 5.45 -26.73 -0.15 -2.71 16 3 C 0.21 5.30 1.98 -68.86 -0.14 5.16 16 4 H 0.03 0.85 7.71 -51.93 -0.40 0.45 16 5 C -0.54 -14.65 8.46 -34.44 -0.29 -14.94 16 6 H 0.05 1.42 7.73 -52.49 -0.41 1.02 16 7 C 0.07 1.83 5.30 -17.82 -0.09 1.73 16 8 N -0.88 -25.03 11.30 55.43 0.63 -24.40 16 9 Si 0.89 21.07 29.54 -169.99 -5.02 16.05 16 10 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 11 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 12 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 13 N -0.69 -14.37 5.76 -107.95 -0.62 -14.99 16 14 C 0.07 1.18 5.33 -3.82 -0.02 1.16 16 15 C -0.11 -1.53 4.74 -26.73 -0.13 -1.65 16 16 C -0.12 -1.51 3.08 -89.09 -0.27 -1.79 16 17 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 18 C -0.15 -1.58 6.71 -24.72 -0.17 -1.74 16 19 C 0.05 0.48 7.72 38.21 0.29 0.77 16 20 O -0.38 -5.36 11.52 -35.23 -0.41 -5.77 16 21 C 0.05 0.65 6.93 37.73 0.26 0.91 16 22 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 23 H 0.05 0.93 7.90 -51.93 -0.41 0.52 16 24 H 0.04 0.78 8.14 -51.92 -0.42 0.35 16 25 H 0.09 2.40 5.98 -51.93 -0.31 2.09 16 26 H 0.03 0.73 8.14 -51.93 -0.42 0.30 16 27 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 28 H 0.33 6.71 8.45 -39.29 -0.33 6.38 16 29 H 0.03 0.50 8.11 -51.93 -0.42 0.08 16 30 H 0.06 1.12 6.65 -51.93 -0.35 0.77 16 31 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 32 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 33 H 0.08 0.83 7.87 -51.93 -0.41 0.42 16 34 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 37 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.09 1.31 6.70 -51.93 -0.35 0.96 16 LS Contribution 301.69 15.07 4.55 4.55 Total: -1.00 -28.17 301.69 -7.96 -36.13 By element: Atomic # 1 Polarization: 10.74 SS G_CDS: -6.74 Total: 4.00 kcal Atomic # 6 Polarization: -15.22 SS G_CDS: -0.34 Total: -15.56 kcal Atomic # 7 Polarization: -39.40 SS G_CDS: 0.01 Total: -39.39 kcal Atomic # 8 Polarization: -5.36 SS G_CDS: -0.41 Total: -5.77 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -28.17 -7.96 -36.13 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000220889010.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.280 kcal (2) G-P(sol) polarization free energy of solvation -28.171 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.451 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.958 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.129 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.409 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds