Wall clock time and date at job start Sun Mar 29 2020 21:50:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.47441 * 2 1 4 4 H 1.09001 * 109.47365 * 304.38090 * 3 2 1 5 5 C 1.50696 * 109.47434 * 184.37316 * 3 2 1 6 6 H 1.07998 * 120.00049 * 240.00645 * 5 3 2 7 7 C 1.37880 * 119.99575 * 60.27664 * 5 3 2 8 8 N 1.31510 * 120.00293 * 359.72476 * 7 5 3 9 9 Si 1.86798 * 119.99797 * 179.72817 * 7 5 3 10 10 H 1.48497 * 109.47309 * 359.97438 * 9 7 5 11 11 H 1.48499 * 109.47264 * 120.00131 * 9 7 5 12 12 H 1.48502 * 109.46954 * 240.00148 * 9 7 5 13 13 N 1.46911 * 109.46677 * 64.37346 * 3 2 1 14 14 C 1.46901 * 110.99609 * 205.79576 * 13 3 2 15 15 C 1.52999 * 109.46861 * 174.89867 * 14 13 3 16 16 C 1.52998 * 109.47382 * 180.02562 * 15 14 13 17 17 H 1.09001 * 110.43015 * 303.90757 * 16 15 14 18 18 C 1.54813 * 110.48977 * 181.22007 * 16 15 14 19 19 C 1.54995 * 102.09041 * 220.43763 * 18 16 15 20 20 O 1.44387 * 103.48978 * 37.02455 * 19 18 16 21 21 C 1.43744 * 106.97378 * 319.93681 * 20 19 18 22 22 H 1.08998 * 109.47759 * 174.08239 * 1 2 3 23 23 H 1.09002 * 109.47439 * 294.09277 * 1 2 3 24 24 H 1.09008 * 109.46858 * 54.08433 * 1 2 3 25 25 H 1.08995 * 109.46889 * 240.00153 * 2 1 3 26 26 H 1.08996 * 109.46816 * 120.00481 * 2 1 3 27 27 H 0.96997 * 120.00237 * 179.97438 * 8 7 5 28 28 H 1.00899 * 110.99561 * 81.85000 * 13 3 2 29 29 H 1.09001 * 109.47401 * 294.89785 * 14 13 3 30 30 H 1.08998 * 109.47186 * 54.89705 * 14 13 3 31 31 H 1.09001 * 109.47046 * 300.00135 * 15 14 13 32 32 H 1.08998 * 109.47353 * 59.99940 * 15 14 13 33 33 H 1.08999 * 110.90591 * 338.64059 * 18 16 15 34 34 H 1.09003 * 110.90102 * 102.24447 * 18 16 15 35 35 H 1.08999 * 110.62107 * 278.52157 * 19 18 16 36 36 H 1.08999 * 110.61501 * 155.52160 * 19 18 16 37 37 H 1.08998 * 109.87619 * 267.08832 * 21 20 19 38 38 H 1.09002 * 109.87823 * 145.93522 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6141 1.9785 -0.8481 5 6 3.5432 1.4438 -0.1083 6 1 4.1404 1.8911 0.6724 7 6 4.1556 0.8789 -1.2069 8 7 3.4283 0.3342 -2.1576 9 14 6.0184 0.8874 -1.3449 10 1 6.6001 1.5561 -0.1534 11 1 6.5155 -0.5099 -1.4209 12 1 6.4207 1.6232 -2.5705 13 7 1.6385 2.1038 1.2489 14 6 1.5432 3.5584 1.0672 15 6 1.0020 4.1978 2.3474 16 6 0.9021 5.7128 2.1580 17 1 1.8694 6.1249 1.8707 18 6 0.3850 6.3877 3.4518 19 6 -0.5849 7.4600 2.8932 20 8 -1.1986 6.8031 1.7634 21 6 -0.1654 6.0550 1.1008 22 1 -0.3634 -1.0221 -0.1059 23 1 -0.3634 0.4195 0.9381 24 1 -0.3633 0.6029 -0.8324 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5139 0.8899 27 1 3.8591 -0.0629 -2.9306 28 1 2.2722 1.8739 1.9996 29 1 2.5316 3.9628 0.8488 30 1 0.8698 3.7777 0.2386 31 1 0.0136 3.7934 2.5657 32 1 1.6754 3.9785 3.1759 33 1 -0.1462 5.6714 4.0786 34 1 1.2033 6.8522 4.0019 35 1 -0.0351 8.3443 2.5710 36 1 -1.3356 7.7237 3.6382 37 1 0.2778 6.6574 0.3079 38 1 -0.5814 5.1378 0.6837 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000220889010.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:50:42 Heat of formation + Delta-G solvation = -88.184925 kcal Electronic energy + Delta-G solvation = -16138.698833 eV Core-core repulsion = 13593.305641 eV Total energy + Delta-G solvation = -2545.393192 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.44131 -38.13821 -35.57864 -33.89929 -32.67742 -30.77767 -28.88623 -27.22536 -24.82657 -23.98117 -22.45872 -21.55405 -20.93357 -18.76060 -17.56664 -17.07986 -16.71353 -16.03745 -15.80358 -15.52374 -14.94499 -14.75996 -14.37059 -13.75383 -13.61805 -13.29425 -13.14623 -13.06508 -12.76444 -12.65600 -12.46152 -12.22994 -12.12789 -11.91584 -11.60167 -11.53654 -11.45793 -11.15965 -10.95823 -10.59613 -10.47992 -9.04760 -8.06219 -6.29031 1.36641 1.39269 1.49197 2.39272 3.05781 3.13262 3.51026 3.64906 3.97196 4.10416 4.29183 4.33334 4.37106 4.50314 4.60868 4.74103 4.75624 4.81472 4.88089 4.91585 4.93456 4.96804 5.03973 5.15185 5.19397 5.29796 5.41215 5.41500 5.51811 5.63486 5.77002 5.96362 6.10178 6.19813 6.38675 6.82538 7.02168 7.42818 8.90551 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.030599 B = 0.005882 C = 0.005312 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 914.841113 B = 4758.814110 C = 5269.526738 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.103 4.103 3 C 0.220 3.780 4 H -0.004 1.004 5 C -0.559 4.559 6 H 0.050 0.950 7 C 0.019 3.981 8 N -0.912 5.912 9 Si 0.952 3.048 10 H -0.270 1.270 11 H -0.279 1.279 12 H -0.282 1.282 13 N -0.683 5.683 14 C 0.068 3.932 15 C -0.091 4.091 16 C -0.119 4.119 17 H 0.085 0.915 18 C -0.143 4.143 19 C 0.040 3.960 20 O -0.405 6.405 21 C 0.047 3.953 22 H 0.044 0.956 23 H 0.057 0.943 24 H 0.028 0.972 25 H 0.060 0.940 26 H 0.029 0.971 27 H 0.262 0.738 28 H 0.330 0.670 29 H 0.010 0.990 30 H 0.049 0.951 31 H 0.066 0.934 32 H 0.069 0.931 33 H 0.079 0.921 34 H 0.098 0.902 35 H 0.069 0.931 36 H 0.107 0.893 37 H 0.059 0.941 38 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.606 10.607 9.833 15.180 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.142 4.142 3 C 0.111 3.889 4 H 0.014 0.986 5 C -0.598 4.598 6 H 0.069 0.931 7 C -0.181 4.181 8 N -0.551 5.551 9 Si 0.778 3.222 10 H -0.194 1.194 11 H -0.205 1.205 12 H -0.208 1.208 13 N -0.311 5.311 14 C -0.062 4.062 15 C -0.129 4.129 16 C -0.138 4.138 17 H 0.104 0.896 18 C -0.181 4.181 19 C -0.036 4.036 20 O -0.325 6.325 21 C -0.030 4.030 22 H 0.063 0.937 23 H 0.076 0.924 24 H 0.048 0.952 25 H 0.078 0.922 26 H 0.048 0.952 27 H 0.071 0.929 28 H 0.146 0.854 29 H 0.029 0.971 30 H 0.067 0.933 31 H 0.084 0.916 32 H 0.088 0.912 33 H 0.098 0.902 34 H 0.117 0.883 35 H 0.088 0.912 36 H 0.125 0.875 37 H 0.077 0.923 38 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -5.499 10.423 9.484 15.127 hybrid contribution 2.255 -0.019 -0.686 2.357 sum -3.244 10.404 8.798 14.006 Atomic orbital electron populations 1.21549 0.96446 0.99515 1.00592 1.21362 0.94359 0.98389 1.00042 1.18946 0.91616 0.91540 0.86795 0.98579 1.22194 0.93988 1.37952 1.05674 0.93147 1.25690 1.02263 0.94743 0.95431 1.70017 1.36466 1.38784 1.09837 0.85606 0.80902 0.77803 0.77893 1.19404 1.20488 1.20791 1.60831 1.54657 1.07557 1.08104 1.21842 0.97821 0.88737 0.97811 1.21467 1.01603 0.93004 0.96784 1.22527 0.99354 0.96098 0.95821 0.89634 1.23190 0.99962 0.98206 0.96726 1.23769 0.96683 0.95243 0.87936 1.88834 1.34025 1.65703 1.43950 1.23317 0.88656 0.95761 0.95236 0.93675 0.92413 0.95235 0.92185 0.95180 0.92875 0.85404 0.97137 0.93257 0.91568 0.91195 0.90197 0.88335 0.91248 0.87505 0.92268 0.90672 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.09 9.72 71.98 0.70 -4.39 16 2 C -0.10 -5.01 5.45 30.59 0.17 -4.84 16 3 C 0.22 11.08 1.98 44.17 0.09 11.17 16 4 H 0.00 -0.21 7.71 -2.39 -0.02 -0.23 16 5 C -0.56 -30.36 8.46 25.60 0.22 -30.14 16 6 H 0.05 2.70 7.73 -2.91 -0.02 2.68 16 7 C 0.02 1.03 5.30 84.66 0.45 1.47 16 8 N -0.91 -52.43 11.30 21.45 0.24 -52.18 16 9 Si 0.95 43.30 29.54 68.60 2.03 45.32 16 10 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 11 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 12 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 13 N -0.68 -28.37 5.76 -495.43 -2.85 -31.22 16 14 C 0.07 2.47 5.33 86.30 0.46 2.93 16 15 C -0.09 -2.50 4.74 30.59 0.15 -2.35 16 16 C -0.12 -2.78 3.08 -9.80 -0.03 -2.81 16 17 H 0.09 1.94 8.14 -2.39 -0.02 1.92 16 18 C -0.14 -2.60 6.71 31.90 0.21 -2.38 16 19 C 0.04 0.74 7.72 72.66 0.56 1.30 16 20 O -0.41 -10.87 11.52 -148.98 -1.72 -12.59 16 21 C 0.05 1.23 6.93 72.35 0.50 1.73 16 22 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 23 H 0.06 2.23 7.90 -2.39 -0.02 2.21 16 24 H 0.03 1.23 8.14 -2.38 -0.02 1.21 16 25 H 0.06 3.29 5.98 -2.39 -0.01 3.27 16 26 H 0.03 1.42 8.14 -2.39 -0.02 1.40 16 27 H 0.26 14.30 8.31 -92.71 -0.77 13.52 16 28 H 0.33 13.36 8.45 -89.69 -0.76 12.60 16 29 H 0.01 0.41 8.11 -2.39 -0.02 0.39 16 30 H 0.05 1.89 6.65 -2.39 -0.02 1.87 16 31 H 0.07 1.88 8.14 -2.39 -0.02 1.87 16 32 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 33 H 0.08 1.45 7.87 -2.39 -0.02 1.43 16 34 H 0.10 1.38 8.14 -2.39 -0.02 1.36 16 35 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 36 H 0.11 1.58 8.14 -2.39 -0.02 1.56 16 37 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 38 H 0.08 2.18 6.70 -2.39 -0.02 2.16 16 Total: -1.00 -60.10 301.69 1.42 -58.68 By element: Atomic # 1 Polarization: 20.06 SS G_CDS: 0.25 Total: 20.31 kcal Atomic # 6 Polarization: -31.78 SS G_CDS: 3.47 Total: -28.31 kcal Atomic # 7 Polarization: -80.80 SS G_CDS: -2.61 Total: -83.41 kcal Atomic # 8 Polarization: -10.87 SS G_CDS: -1.72 Total: -12.59 kcal Atomic # 14 Polarization: 43.30 SS G_CDS: 2.03 Total: 45.32 kcal Total: -60.10 1.42 -58.68 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000220889010.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.507 kcal (2) G-P(sol) polarization free energy of solvation -60.102 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.609 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.424 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.678 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.185 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds